Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Forward (+)

37369589 .. 37377420

Gene Structure 7832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGAGTTTTCAGTGTCCTCCCCATACTATTACTATCCCAATCCCAAACCCACCACAACCACCACCACCTTTGCTCTCAAACCCCCAAATTCCCAAGCTTCCTCCTCCCCTCTCTCCTCGTCTAACCAACTTCGTCGCCCCAAAACCATCACCACCACTCCTCCTCCTCCTCCTCCTCCTCAGCTCACCAAACCCATCTCAAAAATCCCCTCTAACCCCTTCAAGAACCTCACTAATCCCACCCATGTCCCCACTCCACCGATTACCACCACCGATTCTAACACCTCTCTTCTCACTAACAAGCTCTGGCTCACCAGCAAGCTCTCTCCTCCTCCTCCACCGCCACCAGACATAGAAGACGACGGCGGCGACGACGAAGAAGAAGCAGTCAAGTACAATGAACCCAAAAAGAAGAAATCGCAGCTGCCAAAAGTCGAGTTCCGGCAAGAGGGTAAGATTTTCGTGGGGAATTTACCCAACTGGCTCAAGAAAAACGAGGTCTCCGAGTTTTTCCGGCAATTCGGACCGATAACGAATGTGATTCTGATCAAGGGCCACGACAGCGCTGAGAGAAATGCTGGTTTCGGATTCGTTATATACGGCGGCCCCAATGCGACCAAGTCTGCCATGAAGGCGGTGGAGTTTGACGGCGTGGAGTTTCACGGGAGGGTTCTGACTGTTAAGTTGGACGATGGGGGCAGACTGAAGGACAAAGCTGAGCAGAGGACGCGGTGGATTGAGCAAGAATCCGGCGACGGTGTTGAGTACCGAGCTCGGTCTAAGTGGCACAAAGAGAGGCAGAGCTCTCGCAATGCCTTGCGCAAGGTTATGGAGACGGAGCCGGAGAACTGGCAGGCGGTGGTTCAGACTTTTGAGAGGATTAACAAGCCTTCTAGAGGAGAGTATGGTCTGATGGTCAAGTATTATGCTAGGCGAGGGGACATGCATCGTGCTCGTGAAACATTTGAGAGCATGAGAGCAAGAGGAATAGAGCCGACTTCACACGTATACACAAGCCTGATTCACGCTTATGCAGTTGGCAGAGACATGGAAGAAGCATTATCTTGTGTTAGAAAAATGAAGGATGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATTATTGTTGGGGGATTTGCAAAAGTTGGCAATGCCGAAGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTAAATGCAATCATTTATGGGAATATTGTTTATGCTCATTGTCAAGCATGTAATATGGATCGAGCTGAGGCATTGGTACGGGAAATGGAAGAAGCAGGTATAGATGCTCCTATCGACATATATCACACCATGATGGATGGTTACACAATGGTTGGCAATGAAGATAAATGTTTGATTGTGTTTGAGCGACTGAAGGAATGCGGCTTTACACCTTCTGTCATCAGTTATGGATGTCTGATCAATCTTTACATCAAGGTTGGAAAAGTTTCTAAAGCATTGGAAGTCAGCAAAATGATGGAAACAGCTAGCATAAAACATAACATGAAGACGTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGACTGGGCTAATGCATTTGCAGTTATAGAAGATTTGATGAAGGATGGTTTGAAGCCCGATGTAGTCCTGTATAATAACATTATAACAGCATTTTGTGGAATGGGTAACATGAATCGTGCTGTTCGCACCGTCAAAGAAATGCAGAGGGAGAGGCATAGACCTACATCACGTACGTTTATGCCGATAATACATGGTTTTGCAAGAGCTGGAGATATGAGAAGAGCCCTAGAGATTTTTGACATGATGAGGATGAGCGGATGCATTCCAACCGTCCATACTTTCAATGCTCTAGTTCTTGGTCTTGTGGAGAAGCGGCAGATGGAGAAGGCTGTTGAAATATTGGATGAGATGACACTTGCAGGCATTAGTCCAAATGAACACACATACACAACTGTCATGAATGGTTATGCATCTTTAGGTGATACTGGGAAAGCTTTCGAGTATTTTTCCAAATTGAGGAATGATGGCCTAGAGATTGATGTTTTCACATATGAGGCATTGCTGAAGGCATGTTGCAAAGCAGGCAAAATGCAGAGTGCTTTAGCTGTCACCAAGGAAATGAGTGCTCAAAAAATTCCAAGGAACACCTTCGTGTACAACATATTAGTTGATGGGTATGGTTTGTTCAAAATCTTGATGTCCTCTGATATACTTCAAACAATCACACTGTCATCTGTCCTTAACCTACTGTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

756

Amino Acids

84.99

Weight (kDa)

8.75

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	153 - 225	2e-10	RNA recognition motif
PPR_2	PF13041	304 - 345	2e-08	PPR repeat family
TPR_24	PF23276	310 - 423	8.2e-08	Fungal tetratrico peptide repeats
TPR_24	PF23276	310 - 376	4.9e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	315 - 388	2.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	336 - 381	1e-09	PPR repeat family
PPR	PF01535	336 - 365	4.7e-06	PPR repeat
PPR_3	PF13812	337 - 379	7.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	426 - 484	2e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	461 - 569	3.4e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	472 - 521	3.3e-10	PPR repeat family
PPR_3	PF13812	531 - 585	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	538 - 571	7e-08	PPR repeat
PPR_2	PF13041	542 - 591	4.4e-11	PPR repeat family
PPR_2	PF13041	577 - 624	3.3e-09	PPR repeat family
TPR_24	PF23276	579 - 674	2.2e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	581 - 621	4.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	612 - 660	9.3e-14	PPR repeat family
PPR_2	PF13041	651 - 696	2.4e-10	PPR repeat family
PPR_3	PF13812	673 - 730	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	678 - 711	7.7e-07	PPR repeat
PPR_2	PF13041	683 - 729	5.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1652
Acc16I	TGCGCA	1 cut(s)	821
Acc36I	ACCTGC	1 cut(s)	1289
AccBSI	CCGCTC	1 cut(s)	1824
AccI	GTMKAC	1 cut(s)	1008
AccII	CGCG	1 cut(s)	730
AciI	CCGC	9 cut(s)	341, 366, 603, 635, 730, 857, 1404, 1824, 1882
AclWI	GGATC	1 cut(s)	1269
AcsI	RAATTY	3 cut(s)	88, 469, 2142
AcuI	CTGAAG	3 cut(s)	725, 1415, 2093
AfaI	GTAC	6 cut(s)	395, 767, 1281, 1535, 1741, 2165
AfeI	AGCGCT	1 cut(s)	565
AfiI	CCNNNNNNNGG	3 cut(s)	448, 896, 2025
AflIII	ACRYGT	1 cut(s)	1003
AgsI	TTSAA	8 cut(s)	223, 1097, 1561, 1621, 1852, 1904, 2197, 2225
AleI	CACNNNNGTG	1 cut(s)	2159
Alw21I	GWGCWC	4 cut(s)	775, 806, 955, 2137
Alw26I	GTCTC	4 cut(s)	505, 827, 1038, 1186
AlwI	GGATC	1 cut(s)	1269
Aor51HI	AGCGCT	1 cut(s)	565
AoxI	GGCC	4 cut(s)	553, 604, 1182, 2035
ApeKI	GCWGC	3 cut(s)	421, 424, 1160
ApoI	RAATTY	3 cut(s)	88, 469, 2142
Asp700I	GAANNNNTTC	3 cut(s)	1468, 2003, 2156
AspLEI	GCGC	2 cut(s)	566, 822
AspS9I	GGNCC	3 cut(s)	524, 553, 605
AsuHPI	GGTGA	6 cut(s)	142, 178, 304, 1120, 2000, 2110
AsuNHI	GCTAGC	1 cut(s)	1508
AvaII	GGWCC	1 cut(s)	524
BanII	GRGCYC	3 cut(s)	775, 806, 1795
BauI	CACGAG	1 cut(s)	954
BbsI	GAAGAC	2 cut(s)	363, 1535
Bbv12I	GWGCWC	4 cut(s)	775, 806, 955, 2137
BbvCI	CCTCAGC	2 cut(s)	180, 1269
BbvI	GCAGC	3 cut(s)	411, 433, 1147
BceAI	ACGGC	3 cut(s)	379, 616, 664
BcgI	CGANNNNNNTGC	4 cut(s)	788, 822, 935, 969
BclI	TGATCA	3 cut(s)	546, 1440, 1545
BcoDI	GTCTC	4 cut(s)	505, 827, 1038, 1186
BfaI	CTAG	6 cut(s)	894, 930, 1509, 1796, 1859, 2039
BfmI	CTRYAG	1 cut(s)	1161
BfoI	RGCGCY	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	1289
BglI	GCCNNNNNGGC	1 cut(s)	632
BisI	GCNGC	7 cut(s)	367, 422, 425, 604, 1161, 1405, 1883
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	7 cut(s)	368, 423, 426, 605, 1162, 1406, 1884
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	3 cut(s)	524, 553, 605
BmiI	GGNNCC	2 cut(s)	607, 840
BmrI	ACTGGG	2 cut(s)	1582, 2004
BmsI	GCATC	4 cut(s)	955, 1297, 1817, 1988
BmtI	GCTAGC	1 cut(s)	1512
BmuI	ACTGGG	2 cut(s)	1582, 2004
BpiI	GAAGAC	2 cut(s)	363, 1535
BpmI	CTGGAG	1 cut(s)	1797
Bpu10I	CCTNAGC	2 cut(s)	180, 1269
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	470
BsaAI	YACGTR	2 cut(s)	1006, 1739
BsaBI	GATNNNNATC	1 cut(s)	545
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	2121, 2147
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 148, 172, 175, 178, 485, 515
Bsc4I	CCNNNNNNNGG	3 cut(s)	448, 896, 2025
Bse1I	ACTGG	5 cut(s)	485, 854, 1175, 1577, 1999
Bse3DI	GCAATG	4 cut(s)	817, 1156, 1366, 2066
Bse8I	GATNNNNATC	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	2121, 2147
BseGI	GGATG	7 cut(s)	1090, 1345, 1439, 1618, 1824, 1832, 1918
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	3 cut(s)	448, 896, 2025
BseMI	GCAATG	4 cut(s)	817, 1156, 1366, 2066
BseMII	CTCAG	4 cut(s)	194, 558, 708, 1260
BseNI	ACTGG	5 cut(s)	485, 854, 1175, 1577, 1999
BseXI	GCAGC	3 cut(s)	411, 433, 1147
Bsh1236I	CGCG	1 cut(s)	730
BshFI	GGCC	4 cut(s)	555, 606, 1184, 2037
BsiHKAI	GWGCWC	4 cut(s)	775, 806, 955, 2137
BsiSI	CCGG	4 cut(s)	442, 514, 750, 842
BsiWI	CGTACG	1 cut(s)	1739
BslFI	GGGAC	2 cut(s)	233, 953
BslI	CCNNNNNNNGG	3 cut(s)	448, 896, 2025
BsmAI	GTCTC	4 cut(s)	505, 827, 1038, 1186
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	2 cut(s)	233, 953
BsmI	GAATGC	2 cut(s)	1406, 1830
BsnI	GGCC	4 cut(s)	555, 606, 1184, 2037
Bso31I	GGTCTC	1 cut(s)	505
Bsp1286I	GDGCHC	5 cut(s)	775, 806, 955, 1795, 2137
Bsp1407I	TGTACA	1 cut(s)	2163
Bsp143I	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
Bsp1720I	GCTNAGC	1 cut(s)	717
BspACI	CCGC	9 cut(s)	341, 366, 603, 635, 730, 857, 1404, 1824, 1882
BspANI	GGCC	4 cut(s)	555, 606, 1184, 2037
BspCNI	CTCAG	4 cut(s)	193, 559, 709, 1261
BspFNI	CGCG	1 cut(s)	730
BspHI	TCATGA	1 cut(s)	1965
BspLI	GGNNCC	2 cut(s)	607, 840
BspMAI	CTGCAG	1 cut(s)	1165
BspMI	ACCTGC	1 cut(s)	1289
BspOI	GCTAGC	1 cut(s)	1512
BspPI	GGATC	1 cut(s)	1269
BspQI	GCTCTTC	1 cut(s)	1783
BspTNI	GGTCTC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	1824
BsrDI	GCAATG	4 cut(s)	817, 1156, 1366, 2066
BsrGI	TGTACA	1 cut(s)	2163
BsrI	ACTGG	5 cut(s)	485, 854, 1175, 1577, 1999
BssECI	CCNNGG	2 cut(s)	2121, 2147
BssMI	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
BssNAI	GTATAC	1 cut(s)	1009
BssSI	CACGAG	1 cut(s)	954
BssT1I	CCWWGG	2 cut(s)	2121, 2147
Bst1107I	GTATAC	1 cut(s)	1009
Bst2BI	CACGAG	1 cut(s)	954
Bst4CI	ACNGT	8 cut(s)	679, 758, 1118, 1699, 1840, 1963, 2238, 2259
Bst6I	CTCTTC	2 cut(s)	294, 1783
BstAUI	TGTACA	1 cut(s)	2163
BstBAI	YACGTR	2 cut(s)	1006, 1739
BstC8I	GCNNGC	5 cut(s)	320, 855, 1510, 1930, 2092
BstDEI	CTNAG	5 cut(s)	180, 567, 717, 780, 1269
BstENI	CCTNNNNNAGG	1 cut(s)	894
BstF5I	GGATG	7 cut(s)	1090, 1345, 1439, 1618, 1824, 1832, 1918
BstFNI	CGCG	1 cut(s)	730
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	2 cut(s)	566, 822
BstKTI	GATC	5 cut(s)	549, 1168, 1264, 1443, 1548
BstMAI	GTCTC	4 cut(s)	505, 827, 1038, 1186
BstMBI	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
BstMWI	GCNNNNNNNGC	5 cut(s)	561, 632, 727, 1160, 2091
BstNSI	RCATGY	3 cut(s)	946, 1254, 2082
BstSFI	CTRYAG	1 cut(s)	1161
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	3 cut(s)	411, 433, 1147
BstV2I	GAAGAC	2 cut(s)	363, 1535
BstZ17I	GTATAC	1 cut(s)	1009
BsuRI	GGCC	4 cut(s)	555, 606, 1184, 2037
BtsCI	GGATG	7 cut(s)	1090, 1345, 1439, 1618, 1824, 1832, 1918
BtsIMutI	CAGTG	3 cut(s)	18, 1168, 2234
BveI	ACCTGC	1 cut(s)	1289
Cac8I	GCNNGC	5 cut(s)	320, 855, 1510, 1930, 2092
CciI	TCATGA	1 cut(s)	1965
CfoI	GCGC	2 cut(s)	566, 822
Cfr13I	GGNCC	3 cut(s)	524, 553, 605
CpoI	CGGWCCG	1 cut(s)	524
CseI	GACGC	1 cut(s)	736
Csp6I	GTAC	6 cut(s)	394, 766, 1280, 1534, 1740, 2164
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CspI	CGGWCCG	1 cut(s)	524
CviQI	GTAC	6 cut(s)	394, 766, 1280, 1534, 1740, 2164
DdeI	CTNAG	5 cut(s)	180, 567, 717, 780, 1269
DpnI	GATC	5 cut(s)	548, 1167, 1263, 1442, 1547
DpnII	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
DraI	TTTAAA	1 cut(s)	1206
Eam1104I	CTCTTC	2 cut(s)	294, 1783
EarI	CTCTTC	2 cut(s)	294, 1783
Ecl136II	GAGCTC	2 cut(s)	773, 804
Eco130I	CCWWGG	2 cut(s)	2121, 2147
Eco24I	GRGCYC	3 cut(s)	775, 806, 1795
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	524
Eco47III	AGCGCT	1 cut(s)	565
Eco53kI	GAGCTC	2 cut(s)	773, 804
Eco57I	CTGAAG	3 cut(s)	725, 1415, 2093
EcoICRI	GAGCTC	2 cut(s)	773, 804
EcoNI	CCTNNNNNAGG	1 cut(s)	894
EcoT14I	CCWWGG	2 cut(s)	2121, 2147
EcoT22I	ATGCAT	4 cut(s)	948, 1585, 1832, 1981
EcoT38I	GRGCYC	3 cut(s)	775, 806, 1795
ErhI	CCWWGG	2 cut(s)	2121, 2147
Esp3I	CGTCTC	1 cut(s)	827
FaqI	GGGAC	2 cut(s)	233, 953
FauNDI	CATATG	1 cut(s)	2059
FbaI	TGATCA	3 cut(s)	546, 1440, 1545
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	7 cut(s)	367, 422, 425, 604, 1161, 1405, 1883
FokI	GGATG	7 cut(s)	1097, 1352, 1446, 1625, 1831, 1839, 1925
FriOI	GRGCYC	3 cut(s)	775, 806, 1795
Fsp4HI	GCNGC	7 cut(s)	367, 422, 425, 604, 1161, 1405, 1883
FspBI	CTAG	6 cut(s)	894, 930, 1509, 1796, 1859, 2039
FspI	TGCGCA	1 cut(s)	821
GlaI	GCGC	2 cut(s)	565, 821
GluI	GCNGC	7 cut(s)	367, 422, 425, 604, 1161, 1405, 1883
GsuI	CTGGAG	1 cut(s)	1797
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	4 cut(s)	555, 606, 1184, 2037
HapII	CCGG	4 cut(s)	442, 514, 750, 842
HgaI	GACGC	1 cut(s)	736
HhaI	GCGC	2 cut(s)	566, 822
Hin6I	GCGC	2 cut(s)	564, 820
HinP1I	GCGC	2 cut(s)	564, 820
HindIII	AAGCTT	2 cut(s)	96, 2001
HinfI	GANTC	7 cut(s)	275, 541, 588, 746, 1021, 1554, 1681
HpaII	CCGG	4 cut(s)	442, 514, 750, 842
HphI	GGTGA	6 cut(s)	142, 178, 304, 1120, 2000, 2110
Hpy166II	GTNNAC	2 cut(s)	1009, 2164
Hpy188I	TCNGA	9 cut(s)	505, 524, 546, 587, 675, 867, 912, 1440, 2215
Hpy188III	TCNNGA	7 cut(s)	223, 487, 894, 956, 1558, 1966, 2203
Hpy8I	GTNNAC	2 cut(s)	1009, 2164
Hpy99I	CGWCG	5 cut(s)	138, 365, 374, 377, 758
HpyCH4III	ACNGT	8 cut(s)	679, 758, 1118, 1699, 1840, 1963, 2238, 2259
HpyCH4IV	ACGT	4 cut(s)	1005, 1532, 1738, 1742
HpyF10VI	GCNNNNNNNGC	5 cut(s)	561, 632, 727, 1160, 2091
HpyF3I	CTNAG	5 cut(s)	180, 567, 717, 780, 1269
HpySE526I	ACGT	4 cut(s)	1005, 1532, 1738, 1742
HspAI	GCGC	2 cut(s)	564, 820
Ksp22I	TGATCA	3 cut(s)	546, 1440, 1545
Kzo9I	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
LguI	GCTCTTC	1 cut(s)	1783
LmnI	GCTCC	2 cut(s)	838, 1315
Lsp1109I	GCAGC	3 cut(s)	411, 433, 1147
LweI	GCATC	4 cut(s)	955, 1297, 1817, 1988
MaeI	CTAG	6 cut(s)	894, 930, 1509, 1796, 1859, 2039
MaeII	ACGT	4 cut(s)	1005, 1532, 1738, 1742
MaeIII	GTNAC	4 cut(s)	1108, 1343, 1673, 2116
MalI	GATC	5 cut(s)	548, 1167, 1263, 1442, 1547
MbiI	CCGCTC	1 cut(s)	1824
MboI	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
MhlI	GDGCHC	5 cut(s)	775, 806, 955, 1795, 2137
MluCI	AATT	5 cut(s)	88, 469, 518, 2021, 2142
MmeI	TCCRAC	3 cut(s)	666, 1441, 1859
Mph1103I	ATGCAT	4 cut(s)	948, 1585, 1832, 1981
MroXI	GAANNNNTTC	3 cut(s)	1468, 2003, 2156
MseI	TTAA	7 cut(s)	681, 882, 1176, 1205, 1565, 2250, 2266
MslI	CAYNNNNRTG	4 cut(s)	1029, 1097, 1334, 2159
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	4 cut(s)	442, 514, 750, 842
Mva1269I	GAATGC	2 cut(s)	1406, 1830
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	5 cut(s)	561, 632, 727, 1160, 2091
NdeI	CATATG	1 cut(s)	2059
NdeII	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
NheI	GCTAGC	1 cut(s)	1508
NlaIV	GGNNCC	2 cut(s)	607, 840
NmuCI	GTSAC	2 cut(s)	1108, 2116
NsbI	TGCGCA	1 cut(s)	821
NsiI	ATGCAT	4 cut(s)	948, 1585, 1832, 1981
NspI	RCATGY	3 cut(s)	946, 1254, 2082
OliI	CACNNNNGTG	1 cut(s)	2159
PagI	TCATGA	1 cut(s)	1965
PciSI	GCTCTTC	1 cut(s)	1783
PcsI	WCGNNNNNNNCGW	4 cut(s)	366, 369, 501, 1748
PctI	GAATGC	2 cut(s)	1406, 1830
PdmI	GAANNNNTTC	3 cut(s)	1468, 2003, 2156
PfeI	GAWTC	7 cut(s)	275, 541, 588, 746, 1021, 1554, 1681
Pfl23II	CGTACG	1 cut(s)	1739
PflFI	GACNNNGTC	1 cut(s)	619
PkrI	GCNGC	7 cut(s)	368, 423, 426, 605, 1162, 1406, 1884
Ppu21I	YACGTR	2 cut(s)	1006, 1739
PsiI	TTATAA	1 cut(s)	1652
Psp124BI	GAGCTC	2 cut(s)	775, 806
PspLI	CGTACG	1 cut(s)	1739
PspN4I	GGNNCC	2 cut(s)	607, 840
PspPI	GGNCC	3 cut(s)	524, 553, 605
PsrI	GAACNNNNNNTAC	2 cut(s)	2177, 2209
PstI	CTGCAG	1 cut(s)	1165
PsyI	GACNNNGTC	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	6 cut(s)	395, 767, 1281, 1535, 1741, 2165
RsaNI	GTAC	6 cut(s)	394, 766, 1280, 1534, 1740, 2164
RseI	CAYNNNNRTG	4 cut(s)	1029, 1097, 1334, 2159
Rsr2I	CGGWCCG	1 cut(s)	524
RsrII	CGGWCCG	1 cut(s)	524
SacI	GAGCTC	2 cut(s)	775, 806
SapI	GCTCTTC	1 cut(s)	1783
SaqAI	TTAA	7 cut(s)	681, 882, 1176, 1205, 1565, 2250, 2266
SatI	GCNGC	7 cut(s)	367, 422, 425, 604, 1161, 1405, 1883
Sau3AI	GATC	5 cut(s)	546, 1165, 1261, 1440, 1545
Sau96I	GGNCC	3 cut(s)	524, 553, 605
SduI	GDGCHC	5 cut(s)	775, 806, 955, 1795, 2137
SfaNI	GCATC	4 cut(s)	955, 1297, 1817, 1988
SfcI	CTRYAG	1 cut(s)	1161
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	4 cut(s)	1029, 1097, 1334, 2159
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	88, 469, 518, 2021, 2142
SsiI	CCGC	9 cut(s)	341, 366, 603, 635, 730, 857, 1404, 1824, 1882
SspI	AATATT	2 cut(s)	1228, 1908
SspMI	CTAG	6 cut(s)	894, 930, 1509, 1796, 1859, 2039
SstI	GAGCTC	2 cut(s)	775, 806
StyI	CCWWGG	2 cut(s)	2121, 2147
TaaI	ACNGT	8 cut(s)	679, 758, 1118, 1699, 1840, 1963, 2238, 2259
TaiI	ACGT	4 cut(s)	1008, 1535, 1741, 1745
TaqI	TCGA	4 cut(s)	435, 1264, 1317, 2007
TaqII	GACCGA	2 cut(s)	541, 765
TasI	AATT	5 cut(s)	88, 469, 518, 2021, 2142
TatI	WGTACW	2 cut(s)	393, 2163
TauI	GCSGC	4 cut(s)	369, 606, 1407, 1885
TfiI	GAWTC	7 cut(s)	275, 541, 588, 746, 1021, 1554, 1681
Tru1I	TTAA	7 cut(s)	681, 882, 1176, 1205, 1565, 2250, 2266
Tru9I	TTAA	7 cut(s)	681, 882, 1176, 1205, 1565, 2250, 2266
TscAI	CASTG	3 cut(s)	18, 1175, 2241
TseFI	GTSAC	2 cut(s)	1108, 2116
TseI	GCWGC	3 cut(s)	421, 424, 1160
Tsp45I	GTSAC	2 cut(s)	1108, 2116
TspDTI	ATGAA	9 cut(s)	414, 644, 1094, 1377, 1541, 1622, 1694, 1959, 1982
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	3 cut(s)	18, 1175, 2241
Tth111I	GACNNNGTC	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	524
XagI	CCTNNNNNAGG	1 cut(s)	894
XapI	RAATTY	3 cut(s)	88, 469, 2142
XbaI	TCTAGA	1 cut(s)	893
XceI	RCATGY	3 cut(s)	946, 1254, 2082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	1008
XmnI	GAANNNNTTC	3 cut(s)	1468, 2003, 2156
XspI	CTAG	6 cut(s)	894, 930, 1509, 1796, 1859, 2039
Zsp2I	ATGCAT	4 cut(s)	948, 1585, 1832, 1981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.