Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Reverse (-)

26519495 .. 26527271

Gene Structure 7777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

ATGGAGTTTTCAGTGTCCACCCCACGCTATTACTATCCCAATCCCAAACCCACTACTACCACCACCACCTTTTCTCTCAAACCCCCAAATTCCCAAGCCTCCTCCTCCCCTCTCTCCTCATCTAACCAACTTCGTCGCCCCAAAACCATCACCACTCCTCCTCCTCCTCAGCCCACCAAACCCATCTCCAAAATCCCCTCTAACCCCTTCAAGAACCTCACTAATCCCACCCATGCCCCCACTCCACCGATTATTACCACCACCGATTCTAACACCTCTTCTCTCACCAACAAGCTCTGGCTCACCAGCAAGCTCTCTCCTCCTCCACCGCCACCAGACATAGAAGACGACGAAGAAGAAGCTGTCAAGTACAATGAACCCATAAAGAAATCGCAGCTGCCCAAAGTCGAGTTCCGGCAAGAGGGTAAGATTTTCGTGGGGAATTTACCCAACTGGCTCAAGAAAAACGAGGTCTCCGAGTTTTTCCGGCAATTCGGACCGATAACGAATGTGATTCTGATCAAGGGCCACGACAGCACTGAGAGAAATGCTGGTTTCGGATTCGTTATATACGGCGGCCCCAATGCGACCAAGTCTGCCATGAAGGCGGTGGAGTTTGACGGCGTGGAGTTTCACGGGAGGGTTCTGACTGTTAAGTTGGACGATGGGGGCAGATTGAAGGACAAAGCTGAGCAGAGGACTCGGTGGATTGAGCAAGACTCCGGCGGCGGTGTTGAGTACCGAGCTCGGTCTAAGTGGCACAAGGAGAGGCAGAGCTCTCGCAATGCCTTGCGCAAGGTTATGGAGACGGAGCCGGAGAACTGGCAGGCTGTGGTTCAGACTTTTGAGAGGATTAACAAGCCTTCTAGAGGAGAGTATGGTCTGATGGTCAAGTATTATGCTAGGCGAGGGGACATGCATCGTGCTCGTGAAACATTTGAGAGCATGAGAGCAAGAGGAATAGAGCCGACTTCACATGTATACACAAGCCTGATTCACGCTTATGCAGTTGGCAGAGACATGGAAGAAGCATTATCTTGTGTTAGAAAAATGAAGGATGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATTATTGTTGGGGGATTTGCAAAAGTTGGCAATGCCGAAGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTAAATGCAATCATTTATGGGAATATTGTTTATGCACATTGTCAATCATGTAATATGGATCGAGCTGAGGCATTGGTACGAGAAATGGAAGAAGCAGGTATAGATGCTCCTATCGACATATATCACACCATGATGGATGGTTACACAATGGTTGGCAATGAAGATAAATGTTTGATTGTGTTTGAGCGACTGAAGGAATGCGGCTTTACACCTTCTGTCATCAGTTATGGATGTCTGATCAATCTTTACATCAAGGTTGGAAAAGTTTCTAAGGCATTGGAAGTCAGCAAAATGATGGAAACAGCTAGCATAAAACATAACATGAAGACGTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGACTGGGCTAATGCATTTGCAGTTGTAGAAGATTTGATGAAGGATGGTTTGAAGCCCGATGTAGTCCTGTATAATAACATTATAACAGCATTTTGTGGAATGGGTAACATGAATCGCGCTGTTCGCACCGTCAAAGAAATGCAGAGGGAGAGGCATAGACCTACATCACGTACGTTTATGCCGATAATACATGGTTTTGCAAGAGCTGGAGATATGAGAAGAGCCCTAGAGATTTTTGACATGATGCGGATGAGTGGATGCATTCCAACTGTCCATACTTTCAATGCTCTAGTTCTTGGTCTTGTGGAGAAGCGGCAGATGGAGAAGGCTGTTGAAATATTGGATGAGATGACACTTGCAGGAATTAGTCCAAATGAACACACATACACAACTATCATGAATGGTTATGCATCTTTAGGTGATACTGGGAAAGCTTTCGAGTATTTTTCCAAATTGAGGAATGATGGCCTAGAGATTGATGTTTTCACATATGAAGCATTGCTGAAGGCATGTTGCAAAGCAGGCAAAATGCAGAGTGCTTTAGCTGTCACCAAGGAAATGAGTGCTCAAAAAATTCCAAGGAACACCTTTGTGTACAACATCTTAGTTGATGGATGGGCTCGAAGAGGTGATGTTTGGGAGGCTGCTGACTTGATGCAGCAAATGAAACGGGAAGGGGTTCAACCTGATATCCACTCCTACACGTCTTTCATAAATGCTTGTTGCAAGGCCGGAGACATGCAGAGAGCTGCAAAAACAATTGAAGAGATGAAAACTTTTGGAGTGAAGCCAAATGTTAAAACTTATACCACATTGATACATGGTTGGGCGCGTGCTTCTCTACCGGAGAAGGCTTTGAGATGCTTCAAAGATATGAAGTTGGCTGGATTGAAGCCAGACAAAGCTGTGTACCATTGCTTGATGACGTCACTGTTGTCAAGGGCTACTGTTGCTGAAGCTTACATTTATTCTGGTCTTCTGTCTATCTGCAAGGAGATGATAGAATCTGGATTGACTGTGGATATGGGAACTGCAGTTCACTGGTCGAGGTGCTTACGCAAAATTGAAAGAACAGGTGGTGAGCTTACCGAATCCCTGCAGAAGACCTTCCCTCCTGATTGGAACTCTTGTCATACTTTGTACGTGAGTTCCGACGTAGACAGTGATGATGAAGTTGACATTACTAGTGATGGTGATGATGATGACATGGAGTTTGCTAGTAGAATAGATAACGTTATGATGACTGATGAGGATAGTCTAAAGCACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

937

Amino Acids

105.5

Weight (kDa)

7.77

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	144 - 216	2e-11	RNA recognition motif
PPR_2	PF13041	295 - 336	2.6e-08	PPR repeat family
TPR_24	PF23276	301 - 414	1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	306 - 379	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	319 - 370	6.8e-08	Pentatricopeptide repeat domain
PPR	PF01535	327 - 356	6e-06	PPR repeat
PPR_2	PF13041	327 - 372	1.3e-09	PPR repeat family
PPR_3	PF13812	417 - 475	2.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	452 - 560	7.2e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	463 - 512	4.2e-10	PPR repeat family
PPR_3	PF13812	522 - 577	8.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	529 - 562	9e-08	PPR repeat
PPR_2	PF13041	533 - 582	5.7e-11	PPR repeat family
TPR_24	PF23276	570 - 665	2.8e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	572 - 615	1.7e-08	PPR repeat family
PPR_3	PF13812	572 - 612	5.1e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	587 - 691	3e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	603 - 651	8.3e-14	PPR repeat family
PPR_2	PF13041	642 - 687	2e-10	PPR repeat family
PPR_3	PF13812	664 - 717	7.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	669 - 702	9.9e-07	PPR repeat
PPR_2	PF13041	674 - 721	1.3e-09	PPR repeat family
PPR_long	PF17177	678 - 823	8.3e-15	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	709 - 757	2.1e-14	PPR repeat family
PPR_3	PF13812	732 - 783	2.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	740 - 772	1.6e-07	PPR repeat
PPR_2	PF13041	743 - 791	4e-15	PPR repeat family
PPR	PF01535	747 - 776	2.8e-06	PPR repeat
PPR_3	PF13812	770 - 822	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	775 - 807	2.1e-06	PPR repeat
PPR_2	PF13041	782 - 825	4.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1625
AatII	GACGTC	1 cut(s)	2471
Acc16I	TGCGCA	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	1262
AccI	GTMKAC	2 cut(s)	981, 2700
AccII	CGCG	2 cut(s)	1659, 2374
AciI	CCGC	8 cut(s)	329, 576, 608, 726, 729, 1377, 1789, 1855
AclI	AACGTT	1 cut(s)	2775
AclWI	GGATC	1 cut(s)	1242
AcsI	RAATTY	3 cut(s)	88, 442, 2115
AcuI	CTGAAG	3 cut(s)	1388, 2066, 2517
AcyI	GRCGYC	1 cut(s)	2468
AfaI	GTAC	8 cut(s)	371, 740, 1254, 1508, 1714, 2138, 2453, 2684
AfiI	CCNNNNNNNGG	3 cut(s)	421, 869, 1998
AflIII	ACRYGT	2 cut(s)	976, 2244
AhlI	ACTAGT	1 cut(s)	2726
AjiI	CACGTC	1 cut(s)	2247
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AleI	CACNNNNGTG	1 cut(s)	2132
AloI	GAACNNNNNNTCC	2 cut(s)	2562, 2594
Alw21I	GWGCWC	4 cut(s)	748, 779, 928, 2110
Alw26I	GTCTC	5 cut(s)	478, 800, 1011, 1159, 2271
AlwI	GGATC	1 cut(s)	1242
AoxI	GGCC	5 cut(s)	526, 577, 1155, 2008, 2271
ApeKI	GCWGC	6 cut(s)	394, 397, 1133, 2186, 2200, 2291
ApoI	RAATTY	3 cut(s)	88, 442, 2115
ArsI	GACNNNNNNTTYG	2 cut(s)	2738, 2770
Asp700I	GAANNNNTTC	4 cut(s)	1441, 1976, 2220, 2648
AspLEI	GCGC	3 cut(s)	795, 1661, 2374
AspS9I	GGNCC	3 cut(s)	497, 526, 578
AsuHPI	GGTGA	9 cut(s)	142, 277, 295, 1093, 1973, 2083, 2183, 2633, 2747
AsuNHI	GCTAGC	1 cut(s)	1481
AvaII	GGWCC	1 cut(s)	497
BanII	GRGCYC	4 cut(s)	748, 779, 1768, 2164
BauI	CACGAG	1 cut(s)	927
BbsI	GAAGAC	4 cut(s)	351, 1508, 2510, 2651
Bbv12I	GWGCWC	4 cut(s)	748, 779, 928, 2110
BbvCI	CCTCAGC	2 cut(s)	168, 1242
BbvI	GCAGC	6 cut(s)	384, 406, 1120, 2173, 2212, 2278
BceAI	ACGGC	2 cut(s)	589, 637
BcgI	CGANNNNNNTGC	6 cut(s)	683, 717, 761, 795, 908, 942
BclI	TGATCA	3 cut(s)	519, 1413, 1518
BcoDI	GTCTC	5 cut(s)	478, 800, 1011, 1159, 2271
BcuI	ACTAGT	1 cut(s)	2726
BfaI	CTAG	8 cut(s)	867, 903, 1482, 1769, 1832, 2012, 2727, 2760
BfmI	CTRYAG	3 cut(s)	1134, 2574, 2639
BfuAI	ACCTGC	1 cut(s)	1262
BglI	GCCNNNNNGGC	1 cut(s)	605
BlpI	GCTNAGC	1 cut(s)	690
Bme18I	GGWCC	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	2247
BmgT120I	GGNCC	3 cut(s)	497, 526, 578
BmiI	GGNNCC	2 cut(s)	580, 813
BmrI	ACTGGG	2 cut(s)	1555, 1977
BmsI	GCATC	7 cut(s)	928, 1270, 1776, 1790, 1961, 2187, 2393
BmtI	GCTAGC	1 cut(s)	1485
BmuI	ACTGGG	2 cut(s)	1555, 1977
BpiI	GAAGAC	4 cut(s)	351, 1508, 2510, 2651
BplI	GAGNNNNNCTC	2 cut(s)	704, 736
BpmI	CTGGAG	1 cut(s)	1770
Bpu10I	CCTNAGC	2 cut(s)	168, 1242
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	443
BsaAI	YACGTR	2 cut(s)	1712, 2686
BsaBI	GATNNNNATC	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	2468
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	2094, 2120
BsaWI	WCCGGW	1 cut(s)	2386
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 172, 175, 458, 488, 2638, 2668
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 869, 1998
Bse1I	ACTGG	6 cut(s)	458, 827, 1148, 1550, 1972, 2588
Bse3DI	GCAATG	5 cut(s)	790, 1129, 1339, 2039, 2455
Bse8I	GATNNNNATC	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	2094, 2120
BseGI	GGATG	8 cut(s)	1063, 1318, 1412, 1591, 1797, 1805, 1891, 2162
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	3 cut(s)	421, 869, 1998
BseMI	GCAATG	5 cut(s)	790, 1129, 1339, 2039, 2455
BseMII	CTCAG	4 cut(s)	182, 531, 681, 1233
BseNI	ACTGG	6 cut(s)	458, 827, 1148, 1550, 1972, 2588
BseXI	GCAGC	6 cut(s)	384, 406, 1120, 2173, 2212, 2278
Bsh1236I	CGCG	2 cut(s)	1659, 2374
BshFI	GGCC	5 cut(s)	528, 579, 1157, 2010, 2273
BsiHKAI	GWGCWC	4 cut(s)	748, 779, 928, 2110
BsiSI	CCGG	6 cut(s)	415, 487, 723, 815, 2274, 2387
BsiWI	CGTACG	1 cut(s)	1712
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	3 cut(s)	421, 869, 1998
BsmAI	GTCTC	5 cut(s)	478, 800, 1011, 1159, 2271
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	1 cut(s)	926
BsmI	GAATGC	2 cut(s)	1379, 1803
BsnI	GGCC	5 cut(s)	528, 579, 1157, 2010, 2273
Bso31I	GGTCTC	1 cut(s)	478
Bsp1286I	GDGCHC	6 cut(s)	748, 779, 928, 1768, 2110, 2164
Bsp1407I	TGTACA	1 cut(s)	2136
Bsp143I	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
Bsp1720I	GCTNAGC	1 cut(s)	690
BspACI	CCGC	8 cut(s)	329, 576, 608, 726, 729, 1377, 1789, 1855
BspANI	GGCC	5 cut(s)	528, 579, 1157, 2010, 2273
BspCNI	CTCAG	4 cut(s)	181, 532, 682, 1234
BspFNI	CGCG	2 cut(s)	1659, 2374
BspHI	TCATGA	1 cut(s)	1938
BspLI	GGNNCC	2 cut(s)	580, 813
BspMAI	CTGCAG	3 cut(s)	1138, 2578, 2643
BspMI	ACCTGC	1 cut(s)	1262
BspOI	GCTAGC	1 cut(s)	1485
BspPI	GGATC	1 cut(s)	1242
BspQI	GCTCTTC	1 cut(s)	1756
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	5 cut(s)	790, 1129, 1339, 2039, 2455
BsrGI	TGTACA	1 cut(s)	2136
BsrI	ACTGG	6 cut(s)	458, 827, 1148, 1550, 1972, 2588
BssECI	CCNNGG	2 cut(s)	2094, 2120
BssMI	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
BssNAI	GTATAC	1 cut(s)	982
BssNI	GRCGYC	1 cut(s)	2468
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	2 cut(s)	2094, 2120
Bst1107I	GTATAC	1 cut(s)	982
Bst2BI	CACGAG	1 cut(s)	927
Bst4CI	ACNGT	8 cut(s)	652, 1091, 1672, 1813, 2475, 2491, 2560, 2705
Bst6I	CTCTTC	4 cut(s)	283, 1756, 2161, 2301
BstACI	GRCGYC	1 cut(s)	2468
BstAUI	TGTACA	1 cut(s)	2136
BstBAI	YACGTR	2 cut(s)	1712, 2686
BstC8I	GCNNGC	5 cut(s)	311, 828, 1483, 2065, 2376
BstDEI	CTNAG	7 cut(s)	168, 540, 690, 753, 1242, 1446, 2146
BstENI	CCTNNNNNAGG	1 cut(s)	867
BstF5I	GGATG	8 cut(s)	1063, 1318, 1412, 1591, 1797, 1805, 1891, 2162
BstFNI	CGCG	2 cut(s)	1659, 2374
BstHHI	GCGC	3 cut(s)	795, 1661, 2374
BstKTI	GATC	5 cut(s)	522, 1141, 1237, 1416, 1521
BstMAI	GTCTC	5 cut(s)	478, 800, 1011, 1159, 2271
BstMBI	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
BstMWI	GCNNNNNNNGC	6 cut(s)	534, 605, 1133, 1665, 2064, 2492
BstNSI	RCATGY	4 cut(s)	919, 980, 2055, 2284
BstSFI	CTRYAG	3 cut(s)	1134, 2574, 2639
BstUI	CGCG	2 cut(s)	1659, 2374
BstV1I	GCAGC	6 cut(s)	384, 406, 1120, 2173, 2212, 2278
BstV2I	GAAGAC	4 cut(s)	351, 1508, 2510, 2651
BstZ17I	GTATAC	1 cut(s)	982
BsuRI	GGCC	5 cut(s)	528, 579, 1157, 2010, 2273
BtrI	CACGTC	1 cut(s)	2247
BtsCI	GGATG	8 cut(s)	1063, 1318, 1412, 1591, 1797, 1805, 1891, 2162
BtsIMutI	CAGTG	6 cut(s)	18, 537, 1141, 2471, 2581, 2710
BveI	ACCTGC	1 cut(s)	1262
Cac8I	GCNNGC	5 cut(s)	311, 828, 1483, 2065, 2376
CciI	TCATGA	1 cut(s)	1938
CfoI	GCGC	3 cut(s)	795, 1661, 2374
Cfr13I	GGNCC	3 cut(s)	497, 526, 578
CpoI	CGGWCCG	1 cut(s)	497
Csp6I	GTAC	8 cut(s)	370, 739, 1253, 1507, 1713, 2137, 2452, 2683
CspI	CGGWCCG	1 cut(s)	497
CviQI	GTAC	8 cut(s)	370, 739, 1253, 1507, 1713, 2137, 2452, 2683
DdeI	CTNAG	7 cut(s)	168, 540, 690, 753, 1242, 1446, 2146
DpnI	GATC	5 cut(s)	521, 1140, 1236, 1415, 1520
DpnII	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
DraI	TTTAAA	1 cut(s)	1179
Eam1104I	CTCTTC	4 cut(s)	283, 1756, 2161, 2301
EarI	CTCTTC	4 cut(s)	283, 1756, 2161, 2301
Ecl136II	GAGCTC	2 cut(s)	746, 777
Eco130I	CCWWGG	2 cut(s)	2094, 2120
Eco24I	GRGCYC	4 cut(s)	748, 779, 1768, 2164
Eco31I	GGTCTC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	2233
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	2 cut(s)	746, 777
Eco57I	CTGAAG	3 cut(s)	1388, 2066, 2517
EcoICRI	GAGCTC	2 cut(s)	746, 777
EcoNI	CCTNNNNNAGG	1 cut(s)	867
EcoRV	GATATC	1 cut(s)	2233
EcoT14I	CCWWGG	2 cut(s)	2094, 2120
EcoT22I	ATGCAT	4 cut(s)	921, 1558, 1805, 1954
EcoT38I	GRGCYC	4 cut(s)	748, 779, 1768, 2164
ErhI	CCWWGG	2 cut(s)	2094, 2120
Esp3I	CGTCTC	1 cut(s)	800
FaqI	GGGAC	1 cut(s)	926
FauNDI	CATATG	1 cut(s)	2032
FbaI	TGATCA	3 cut(s)	519, 1413, 1518
FblI	GTMKAC	2 cut(s)	981, 2700
FokI	GGATG	8 cut(s)	1070, 1325, 1419, 1598, 1804, 1812, 1898, 2169
FriOI	GRGCYC	4 cut(s)	748, 779, 1768, 2164
FspBI	CTAG	8 cut(s)	867, 903, 1482, 1769, 1832, 2012, 2727, 2760
FspI	TGCGCA	1 cut(s)	794
GlaI	GCGC	3 cut(s)	794, 1660, 2373
GsuI	CTGGAG	1 cut(s)	1770
HaeIII	GGCC	5 cut(s)	528, 579, 1157, 2010, 2273
HapII	CCGG	6 cut(s)	415, 487, 723, 815, 2274, 2387
HhaI	GCGC	3 cut(s)	795, 1661, 2374
Hin1I	GRCGYC	1 cut(s)	2468
Hin6I	GCGC	3 cut(s)	793, 1659, 2372
HinP1I	GCGC	3 cut(s)	793, 1659, 2372
HincII	GTYRAC	1 cut(s)	2719
HindII	GTYRAC	1 cut(s)	2719
HindIII	AAGCTT	2 cut(s)	1974, 2499
HpaII	CCGG	6 cut(s)	415, 487, 723, 815, 2274, 2387
HphI	GGTGA	9 cut(s)	142, 277, 295, 1093, 1973, 2083, 2183, 2633, 2747
Hpy166II	GTNNAC	7 cut(s)	18, 982, 2137, 2452, 2581, 2701, 2719
Hpy188I	TCNGA	9 cut(s)	478, 497, 519, 560, 648, 840, 885, 1413, 2695
Hpy188III	TCNNGA	8 cut(s)	211, 460, 867, 929, 1531, 1939, 2550, 2657
Hpy8I	GTNNAC	7 cut(s)	18, 982, 2137, 2452, 2581, 2701, 2719
Hpy99I	CGWCG	3 cut(s)	138, 353, 2699
HpyCH4III	ACNGT	8 cut(s)	652, 1091, 1672, 1813, 2475, 2491, 2560, 2705
HpyCH4IV	ACGT	8 cut(s)	1505, 1711, 1715, 2246, 2468, 2685, 2697, 2775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	534, 605, 1133, 1665, 2064, 2492
HpyF3I	CTNAG	7 cut(s)	168, 540, 690, 753, 1242, 1446, 2146
HpySE526I	ACGT	8 cut(s)	1505, 1711, 1715, 2246, 2468, 2685, 2697, 2775
Hsp92I	GRCGYC	1 cut(s)	2468
HspAI	GCGC	3 cut(s)	793, 1659, 2372
Ksp22I	TGATCA	3 cut(s)	519, 1413, 1518
Kzo9I	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
LguI	GCTCTTC	1 cut(s)	1756
LmnI	GCTCC	2 cut(s)	811, 1288
Lsp1109I	GCAGC	6 cut(s)	384, 406, 1120, 2173, 2212, 2278
LweI	GCATC	7 cut(s)	928, 1270, 1776, 1790, 1961, 2187, 2393
MaeI	CTAG	8 cut(s)	867, 903, 1482, 1769, 1832, 2012, 2727, 2760
MaeII	ACGT	8 cut(s)	1505, 1711, 1715, 2246, 2468, 2685, 2697, 2775
MaeIII	GTNAC	5 cut(s)	1081, 1316, 1646, 2089, 2469
MalI	GATC	5 cut(s)	521, 1140, 1236, 1415, 1520
MboI	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
MfeI	CAATTG	1 cut(s)	2301
MhlI	GDGCHC	6 cut(s)	748, 779, 928, 1768, 2110, 2164
MluCI	AATT	8 cut(s)	88, 442, 491, 1905, 1994, 2115, 2301, 2604
MlyI	GAGTC	2 cut(s)	694, 713
MmeI	TCCRAC	4 cut(s)	639, 1414, 1832, 2718
Mph1103I	ATGCAT	4 cut(s)	921, 1558, 1805, 1954
MroXI	GAANNNNTTC	4 cut(s)	1441, 1976, 2220, 2648
MseI	TTAA	6 cut(s)	654, 855, 1149, 1178, 1538, 2340
MslI	CAYNNNNRTG	4 cut(s)	1002, 1070, 1307, 2132
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	6 cut(s)	415, 487, 723, 815, 2274, 2387
MunI	CAATTG	1 cut(s)	2301
Mva1269I	GAATGC	2 cut(s)	1379, 1803
MvnI	CGCG	2 cut(s)	1659, 2374
MwoI	GCNNNNNNNGC	6 cut(s)	534, 605, 1133, 1665, 2064, 2492
NdeI	CATATG	1 cut(s)	2032
NdeII	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
NheI	GCTAGC	1 cut(s)	1481
NlaIV	GGNNCC	2 cut(s)	580, 813
NmuCI	GTSAC	3 cut(s)	1081, 2089, 2469
NsbI	TGCGCA	1 cut(s)	794
NsiI	ATGCAT	4 cut(s)	921, 1558, 1805, 1954
NspI	RCATGY	4 cut(s)	919, 980, 2055, 2284
OliI	CACNNNNGTG	1 cut(s)	2132
PagI	TCATGA	1 cut(s)	1938
PciI	ACATGT	1 cut(s)	976
PciSI	GCTCTTC	1 cut(s)	1756
PcsI	WCGNNNNNNNCGW	3 cut(s)	474, 1721, 2691
PctI	GAATGC	2 cut(s)	1379, 1803
PdmI	GAANNNNTTC	4 cut(s)	1441, 1976, 2220, 2648
PfeI	GAWTC	8 cut(s)	266, 514, 561, 994, 1527, 1654, 2546, 2633
Pfl23II	CGTACG	1 cut(s)	1712
PflFI	GACNNNGTC	1 cut(s)	592
PleI	GAGTC	2 cut(s)	694, 713
PpsI	GAGTC	2 cut(s)	694, 713
Ppu21I	YACGTR	2 cut(s)	1712, 2686
PscI	ACATGT	1 cut(s)	976
PsiI	TTATAA	1 cut(s)	1625
Psp124BI	GAGCTC	2 cut(s)	748, 779
Psp1406I	AACGTT	1 cut(s)	2775
PspLI	CGTACG	1 cut(s)	1712
PspN4I	GGNNCC	2 cut(s)	580, 813
PspPI	GGNCC	3 cut(s)	497, 526, 578
PstI	CTGCAG	3 cut(s)	1138, 2578, 2643
PsyI	GACNNNGTC	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	8 cut(s)	371, 740, 1254, 1508, 1714, 2138, 2453, 2684
RsaNI	GTAC	8 cut(s)	370, 739, 1253, 1507, 1713, 2137, 2452, 2683
RseI	CAYNNNNRTG	4 cut(s)	1002, 1070, 1307, 2132
Rsr2I	CGGWCCG	1 cut(s)	497
RsrII	CGGWCCG	1 cut(s)	497
SacI	GAGCTC	2 cut(s)	748, 779
SapI	GCTCTTC	1 cut(s)	1756
SaqAI	TTAA	6 cut(s)	654, 855, 1149, 1178, 1538, 2340
Sau3AI	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
Sau96I	GGNCC	3 cut(s)	497, 526, 578
SchI	GAGTC	2 cut(s)	694, 713
SduI	GDGCHC	6 cut(s)	748, 779, 928, 1768, 2110, 2164
SfaNI	GCATC	7 cut(s)	928, 1270, 1776, 1790, 1961, 2187, 2393
SfcI	CTRYAG	3 cut(s)	1134, 2574, 2639
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	4 cut(s)	1002, 1070, 1307, 2132
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	2726
Sse9I	AATT	8 cut(s)	88, 442, 491, 1905, 1994, 2115, 2301, 2604
SsiI	CCGC	8 cut(s)	329, 576, 608, 726, 729, 1377, 1789, 1855
SspI	AATATT	2 cut(s)	1201, 1881
SspMI	CTAG	8 cut(s)	867, 903, 1482, 1769, 1832, 2012, 2727, 2760
SstI	GAGCTC	2 cut(s)	748, 779
StyI	CCWWGG	2 cut(s)	2094, 2120
TaaI	ACNGT	8 cut(s)	652, 1091, 1672, 1813, 2475, 2491, 2560, 2705
TaiI	ACGT	8 cut(s)	1508, 1714, 1718, 2249, 2471, 2688, 2700, 2778
TaqI	TCGA	6 cut(s)	408, 1237, 1290, 1980, 2164, 2588
TaqII	GACCGA	2 cut(s)	514, 738
TasI	AATT	8 cut(s)	88, 442, 491, 1905, 1994, 2115, 2301, 2604
TatI	WGTACW	2 cut(s)	369, 2136
TauI	GCSGC	4 cut(s)	579, 729, 1380, 1858
TfiI	GAWTC	8 cut(s)	266, 514, 561, 994, 1527, 1654, 2546, 2633
Tru1I	TTAA	6 cut(s)	654, 855, 1149, 1178, 1538, 2340
Tru9I	TTAA	6 cut(s)	654, 855, 1149, 1178, 1538, 2340
TscAI	CASTG	6 cut(s)	18, 544, 1148, 2478, 2588, 2710
TseFI	GTSAC	3 cut(s)	1081, 2089, 2469
TseI	GCWGC	6 cut(s)	394, 397, 1133, 2186, 2200, 2291
Tsp45I	GTSAC	3 cut(s)	1081, 2089, 2469
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	6 cut(s)	18, 544, 1148, 2478, 2588, 2710
Tth111I	GACNNNGTC	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	867
XapI	RAATTY	3 cut(s)	88, 442, 2115
XbaI	TCTAGA	1 cut(s)	866
XceI	RCATGY	4 cut(s)	919, 980, 2055, 2284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmiI	GTMKAC	2 cut(s)	981, 2700
XmnI	GAANNNNTTC	4 cut(s)	1441, 1976, 2220, 2648
XspI	CTAG	8 cut(s)	867, 903, 1482, 1769, 1832, 2012, 2727, 2760
ZraI	GACGTC	1 cut(s)	2469
Zsp2I	ATGCAT	4 cut(s)	921, 1558, 1805, 1954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.