MD07G1238600.v1.1

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009063
Physical Location & Seq
Reverse (-)
31038518 .. 31039999
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1238600.v1.1.491

Sequence Viewer

Length: 855 bp
ATGGAGGTCAGTGCAGCGGTGGCTACGGCGGCTGCCGCCATATCCGTCAAGAGCATGGAGTTGAAATGGGTGAGCAGCAGAGGCAAAACCCAGATGGAAAAAACTATAAAAACGCCATCAAAGTCCAAATCGCCATTTCCTCTGCAAGCCATGGTCCCAATTTTCATATCCACAAACCCATCTCACGTACATCCATCCGACCTCCGAGACCTCTTCACCGCCTGCAACCTCTCACCCCACCGGTTCCCCAATTACGCCGACGACGGCGGCGTTGAAGCCGTCGACTTGCACAAGCTGCGCATTGCTCTCTCCCACAGCTCAGTCCTGGTCTCGGTCTTCTGCAAGCCAAGTGAATTAATTGGTGATTCATCATCGTTATCCTCTTCCATCGAAACGCAGCAGCAAAAGAGGAAGAAGAAGAAGAAGACGGTTGGTTTTGGGGAGTTGCTTCAGAATGCGGTGACGCCTGTTTCACCATCTAACGGTCAGTTGGTCGGCTTTGGCCGCGCCGTTTCCGATCTCGGACTCACCGCCTCCGTATACGATGTCATGGTGATTCCTTCGTTGCGGGAAATGGGAATCGGCAGGATGATTGTTAGAAGAATCATAAGAATACTCACAAGTAGAGACATCTATGACATAGCAGCCCTTTGCTCAGATGATGAGAGGTCATTCTTCAAAGGGTGTGGCTTTGGGGATGACATTTTGGCCTCCACTGCAATGATGTATACAAGGAGTAGTATTTCAACTGATCCTGAAGGCAATGAACAGATGATTAAACGTGCCGGTCGGAAGCTATTGCTAGTTCCACCCCTCTTAAATACCTTAGAACGCAAGAAGACTAGGAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

285

Amino Acids

31.0

Weight (kDa)

9.65

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 157 - 231 2.8e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 299
AccI GTMKAC 3 cut(s) 282, 540, 728
AccII CGCG 1 cut(s) 507
AciI CCGC 9 cut(s) 17, 29, 36, 219, 267, 458, 505, 531, 568
AclWI GGATC 1 cut(s) 746
AcoI YGGCCR 1 cut(s) 502
AcuI CTGAAG 2 cut(s) 434, 777
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 331, 482
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 4 cut(s) 64, 275, 679, 747
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 3 cut(s) 295, 318, 796
AluI AGCT 3 cut(s) 295, 318, 796
Alw26I GTCTC 3 cut(s) 201, 334, 621
AlwI GGATC 1 cut(s) 746
AoxI GGCC 2 cut(s) 502, 708
ApeKI GCWGC 7 cut(s) 14, 32, 75, 295, 397, 400, 644
AseI ATTAAT 1 cut(s) 356
AsiGI ACCGGT 1 cut(s) 240
AspLEI GCGC 2 cut(s) 300, 509
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 8 cut(s) 82, 208, 225, 374, 465, 472, 520, 565
AvaII GGWCC 1 cut(s) 154
BbsI GAAGAC 3 cut(s) 328, 431, 845
BbvI GCAGC 7 cut(s) 19, 26, 87, 282, 409, 412, 656
BccI CCATC 6 cut(s) 88, 124, 187, 202, 395, 484
BceAI ACGGC 4 cut(s) 42, 263, 280, 494
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 201, 334, 621
BfaI CTAG 2 cut(s) 803, 843
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 156, 245
BmrFI CCNGG 1 cut(s) 326
BpiI GAAGAC 3 cut(s) 328, 431, 845
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 464
BsaI GGTCTC 2 cut(s) 201, 334
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 482
Bse118I RCCGGY 2 cut(s) 240, 785
Bse3DI GCAATG 3 cut(s) 300, 726, 769
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 4 cut(s) 190, 194, 594, 703
BseLI CCNNNNNNNGG 2 cut(s) 331, 482
BseMI GCAATG 3 cut(s) 300, 726, 769
BseMII CTCAG 2 cut(s) 333, 669
BseXI GCAGC 7 cut(s) 19, 26, 87, 282, 409, 412, 656
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 790
BshFI GGCC 2 cut(s) 504, 710
BshTI ACCGGT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 790
BsiSI CCGG 2 cut(s) 241, 786
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 331, 482
BsmAI GTCTC 3 cut(s) 201, 334, 621
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 2 cut(s) 504, 710
Bso31I GGTCTC 2 cut(s) 201, 334
Bsp143I GATC 2 cut(s) 517, 751
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 9 cut(s) 17, 29, 36, 219, 267, 458, 505, 531, 568
BspANI GGCC 2 cut(s) 504, 710
BspCNI CTCAG 2 cut(s) 332, 668
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 156, 245
BspPI GGATC 1 cut(s) 746
BspTNI GGTCTC 2 cut(s) 201, 334
BsrDI GCAATG 3 cut(s) 300, 726, 769
BsrFI RCCGGY 2 cut(s) 240, 785
BssAI RCCGGY 2 cut(s) 240, 785
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 517, 751
BssNAI GTATAC 2 cut(s) 541, 729
BssNI GRCGYC 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 2 cut(s) 541, 729
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 430, 485
Bst6I CTCTTC 2 cut(s) 218, 388
BstACI GRCGYC 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 147, 223, 344
BstDEI CTNAG 3 cut(s) 319, 655, 826
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 4 cut(s) 190, 194, 594, 703
BstFNI CGCG 1 cut(s) 507
BstHHI GCGC 2 cut(s) 300, 509
BstKTI GATC 2 cut(s) 520, 754
BstMAI GTCTC 3 cut(s) 201, 334, 621
BstMBI GATC 2 cut(s) 517, 751
BstMCI CGRYCG 1 cut(s) 790
BstMWI GCNNNNNNNGC 7 cut(s) 20, 29, 35, 81, 295, 504, 716
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 7 cut(s) 19, 26, 87, 282, 409, 412, 656
BstV2I GAAGAC 3 cut(s) 328, 431, 845
BstZ17I GTATAC 2 cut(s) 541, 729
BsuRI GGCC 2 cut(s) 504, 710
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 4 cut(s) 190, 194, 594, 703
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 16, 714
Cac8I GCNNGC 3 cut(s) 147, 223, 344
CfoI GCGC 2 cut(s) 300, 509
Cfr10I RCCGGY 2 cut(s) 240, 785
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 188
CspAI ACCGGT 1 cut(s) 240
CspCI CAANNNNNGTGG 2 cut(s) 667, 702
CviAII CATG 3 cut(s) 55, 151, 550
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 319, 655, 826
DpnI GATC 2 cut(s) 519, 753
DpnII GATC 2 cut(s) 517, 751
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 218, 388
EarI CTCTTC 2 cut(s) 218, 388
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 2 cut(s) 201, 334
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 434, 777
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 58, 154, 553
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 54, 150, 549
FauI CCCGC 1 cut(s) 561
FblI GTMKAC 3 cut(s) 282, 540, 728
FokI GGATG 4 cut(s) 177, 181, 601, 710
FspBI CTAG 2 cut(s) 803, 843
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 2 cut(s) 299, 508
HaeIII GGCC 2 cut(s) 504, 710
HapII CCGG 2 cut(s) 241, 786
HgaI GACGC 1 cut(s) 472
HhaI GCGC 2 cut(s) 300, 509
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 3 cut(s) 58, 154, 553
Hin6I GCGC 2 cut(s) 298, 507
HinP1I GCGC 2 cut(s) 298, 507
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 5 cut(s) 365, 525, 556, 579, 603
HpaII CCGG 2 cut(s) 241, 786
HphI GGTGA 8 cut(s) 82, 208, 225, 374, 465, 472, 520, 565
Hpy166II GTNNAC 3 cut(s) 283, 541, 729
Hpy188I TCNGA 7 cut(s) 199, 206, 453, 517, 524, 658, 792
Hpy188III TCNNGA 2 cut(s) 49, 755
Hpy8I GTNNAC 3 cut(s) 283, 541, 729
Hpy99I CGWCG 3 cut(s) 263, 266, 284
HpyAV CCTTC 2 cut(s) 570, 752
HpyCH4III ACNGT 2 cut(s) 430, 485
HpyCH4IV ACGT 2 cut(s) 186, 781
HpyCH4V TGCA 6 cut(s) 14, 145, 225, 289, 342, 719
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 29, 35, 81, 295, 504, 716
HpyF3I CTNAG 3 cut(s) 319, 655, 826
HpySE526I ACGT 2 cut(s) 186, 781
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 3 cut(s) 58, 154, 553
HspAI GCGC 2 cut(s) 298, 507
Kzo9I GATC 2 cut(s) 517, 751
LpnPI CCDG 9 cut(s) 104, 235, 254, 311, 338, 480, 571, 768, 799
Lsp1109I GCAGC 7 cut(s) 19, 26, 87, 282, 409, 412, 656
MaeI CTAG 2 cut(s) 803, 843
MaeII ACGT 2 cut(s) 186, 781
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 519, 753
MboI GATC 2 cut(s) 517, 751
MluCI AATT 4 cut(s) 159, 250, 353, 357
MlyI GAGTC 1 cut(s) 519
MmeI TCCRAC 2 cut(s) 222, 770
MseI TTAA 3 cut(s) 356, 777, 818
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 241, 786
MspR9I CCNGG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 7 cut(s) 20, 29, 35, 81, 295, 504, 716
NcoI CCATGG 1 cut(s) 150
NdeII GATC 2 cut(s) 517, 751
NlaIII CATG 3 cut(s) 58, 154, 553
NlaIV GGNNCC 2 cut(s) 156, 245
NmuCI GTSAC 1 cut(s) 460
NsbI TGCGCA 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 4 cut(s) 365, 556, 579, 603
PinAI ACCGGT 1 cut(s) 240
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
Ppu21I YACGTR 1 cut(s) 187
PshBI ATTAAT 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 156, 245
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 719
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 3 cut(s) 356, 777, 818
Sau3AI GATC 2 cut(s) 517, 751
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 1 cut(s) 326
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 719
Sse9I AATT 4 cut(s) 159, 250, 353, 357
SsiI CCGC 9 cut(s) 17, 29, 36, 219, 267, 458, 505, 531, 568
SspMI CTAG 2 cut(s) 803, 843
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 430, 485
TaiI ACGT 2 cut(s) 189, 784
TaqI TCGA 2 cut(s) 282, 390
TaqII GACCGA 1 cut(s) 322
TasI AATT 4 cut(s) 159, 250, 353, 357
TauI GCSGC 4 cut(s) 32, 38, 270, 507
TfiI GAWTC 4 cut(s) 365, 556, 579, 603
Tru1I TTAA 3 cut(s) 356, 777, 818
Tru9I TTAA 3 cut(s) 356, 777, 818
TscAI CASTG 2 cut(s) 16, 721
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 7 cut(s) 14, 32, 75, 295, 397, 400, 644
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 154, 357, 780
TspGWI ACGGA 2 cut(s) 34, 526
TspRI CASTG 2 cut(s) 16, 721
VpaK11BI GGWCC 1 cut(s) 154
VspI ATTAAT 1 cut(s) 356
XmiI GTMKAC 3 cut(s) 282, 540, 728
XspI CTAG 2 cut(s) 803, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.