Rw1G033720

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009063
Physical Location & Seq
Reverse (-)
61692617 .. 61693910
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033720.1

Sequence Viewer

Length: 843 bp
ATGGAGGCTGCGACGCCCATGAACATAGTAGAGGGTCAGTCATGCAAGGCTATGGAGTTAAAATGGGTAAGTTCCCGAGGCAAAACCCAACTGCAAAACATGAAAACGCCTTCAAAATCAAAAGCACCAGCTACACTTCAAGCGTCAGTCCCTGTGTTCATATCCACAAACCCATCTCACGTAAAACCAGATGATCTCGTTGAGCTATACAGCGCCTGCAATCTCAACGGCCACCGATTCCCGGAGTACGTGGACGGCGGAGATGGCTGCCGTGTAGTTGAAGGTATTGATGTGAACAAGCTGCGTGTGGCTCTCTCACACAGTGAAGTCGTGGTCTCCGTCTTCTGCAAAGCAAATGATGTAGTTAGCAAAACTTCATCATCATTTTCGCAAAAAAATCGACAGCAGCAGAAGATTACGGAGGGTTTAGGAGAATTGTTTGAGAGGGTGGTGATGCCGGTGACACCATTTAACAGTCAATTGGTGGGTTTTGGCCGAGCTGTTTCTGATCAAGGATTGACAGCCTCCATCTACGATGTTATGGTTATTCCTTCATTGCAGGGTATGGGAATTGGCAAGATGATAGTTAAAAGAATCACAAGAATACTCACAAGTAGAGACATTTATGACATAGCAGCCCTTGCTCAGAGAGTGAGAGCATGTGGTTTTGGAGATGACATTCTGTGCTCCACAGCAATGATGTATACAAGGACTGCTGGTGGTTCAACTAATAATCTCGAAGAACAACGGATGGTAACACGCGCAGGTCGAAAGCTATTGTTAGTCCCACCATTTTTGAAGACCTTACCGTACTCCAAGTCCAAGACCACACAATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

280

Amino Acids

30.54

Weight (kDa)

9.39

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 154 - 219 8.2e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 755
AccI GTMKAC 1 cut(s) 704
AccII CGCG 1 cut(s) 762
AciI CCGC 1 cut(s) 258
AcoI YGGCCR 2 cut(s) 229, 493
AcyI GRCGYC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 2 cut(s) 248, 812
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 5 cut(s) 114, 140, 281, 726, 799
AluBI AGCT 5 cut(s) 131, 205, 301, 500, 775
AluI AGCT 5 cut(s) 131, 205, 301, 500, 775
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 2 cut(s) 340, 612
AlwNI CAGNNNCTG 2 cut(s) 152, 216
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 2 cut(s) 229, 493
ApeKI GCWGC 5 cut(s) 8, 267, 301, 406, 635
AspLEI GCGC 2 cut(s) 215, 764
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 463, 472
AvaI CYCGRG 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 334, 806
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 4 cut(s) 254, 288, 418, 647
BccI CCATC 4 cut(s) 181, 257, 536, 745
BceAI ACGGC 3 cut(s) 244, 255, 271
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 340, 612
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 755
BisI GCNGC 5 cut(s) 9, 268, 302, 407, 636
BlsI GCNGC 5 cut(s) 10, 269, 303, 408, 637
Bme1390I CCNGG 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 444
BpiI GAAGAC 2 cut(s) 334, 806
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 2 cut(s) 181, 250
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 457
Bse3DI GCAATG 2 cut(s) 554, 702
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 554, 702
BseMII CTCAG 1 cut(s) 659
BseXI GCAGC 4 cut(s) 254, 288, 418, 647
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 2 cut(s) 231, 495
BsiHKAI GWGCWC 1 cut(s) 689
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 242, 458
BslFI GGGAC 2 cut(s) 134, 770
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 340, 612
BsmFI GGGAC 2 cut(s) 134, 770
BsnI GGCC 2 cut(s) 231, 495
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 689
Bsp143I GATC 2 cut(s) 193, 508
BspACI CCGC 1 cut(s) 258
BspANI GGCC 2 cut(s) 231, 495
BspCNI CTCAG 1 cut(s) 658
BspFNI CGCG 1 cut(s) 762
BspMI ACCTGC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 2 cut(s) 554, 702
BsrFI RCCGGY 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 193, 508
BssNAI GTATAC 1 cut(s) 705
BssNI GRCGYC 1 cut(s) 14
Bst1107I GTATAC 1 cut(s) 705
Bst4CI ACNGT 3 cut(s) 323, 476, 810
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 2 cut(s) 181, 250
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 762
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 764
BstKTI GATC 2 cut(s) 196, 511
BstMAI GTCTC 2 cut(s) 340, 612
BstMBI GATC 2 cut(s) 193, 508
BstMWI GCNNNNNNNGC 2 cut(s) 264, 641
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 4 cut(s) 254, 288, 418, 647
BstV2I GAAGAC 2 cut(s) 334, 806
BstZ17I GTATAC 1 cut(s) 705
BsuRI GGCC 2 cut(s) 231, 495
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 1 cut(s) 217
CaiI CAGNNNCTG 2 cut(s) 152, 216
CfoI GCGC 2 cut(s) 215, 764
Cfr10I RCCGGY 1 cut(s) 457
CseI GACGC 2 cut(s) 22, 132
Csp6I GTAC 2 cut(s) 247, 811
CspCI CAANNNNNGTGG 2 cut(s) 777, 812
CviAII CATG 4 cut(s) 19, 42, 100, 660
CviQI GTAC 2 cut(s) 247, 811
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 195, 510
DpnII GATC 2 cut(s) 193, 508
DraIII CACNNNGTG 1 cut(s) 323
EaeI YGGCCR 2 cut(s) 229, 493
EciI GGCGGA 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 75
FaeI CATG 4 cut(s) 22, 45, 103, 663
FaqI GGGAC 2 cut(s) 134, 770
FatI CATG 4 cut(s) 18, 41, 99, 659
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 1 cut(s) 704
Fnu4HI GCNGC 5 cut(s) 9, 268, 302, 407, 636
FokI GGATG 1 cut(s) 763
Fsp4HI GCNGC 5 cut(s) 9, 268, 302, 407, 636
GlaI GCGC 2 cut(s) 214, 763
GluI GCNGC 5 cut(s) 9, 268, 302, 407, 636
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 231, 495
HapII CCGG 2 cut(s) 242, 458
HgaI GACGC 2 cut(s) 22, 132
HhaI GCGC 2 cut(s) 215, 764
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 4 cut(s) 22, 45, 103, 663
Hin6I GCGC 2 cut(s) 213, 762
HinP1I GCGC 2 cut(s) 213, 762
HinfI GANTC 2 cut(s) 237, 594
HpaII CCGG 2 cut(s) 242, 458
HphI GGTGA 2 cut(s) 463, 472
Hpy166II GTNNAC 3 cut(s) 253, 295, 705
Hpy188I TCNGA 2 cut(s) 508, 648
Hpy188III TCNNGA 2 cut(s) 75, 737
Hpy8I GTNNAC 3 cut(s) 253, 295, 705
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 120, 275, 561
HpyCH4III ACNGT 3 cut(s) 323, 476, 810
HpyCH4IV ACGT 2 cut(s) 180, 249
HpyCH4V TGCA 5 cut(s) 45, 94, 219, 348, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 641
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 2 cut(s) 180, 249
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 4 cut(s) 22, 45, 103, 663
HspAI GCGC 2 cut(s) 213, 762
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 2 cut(s) 193, 508
LmnI GCTCC 1 cut(s) 692
LpnPI CCDG 9 cut(s) 141, 165, 201, 229, 255, 471, 545, 702, 750
Lsp1109I GCAGC 4 cut(s) 254, 288, 418, 647
LweI GCATC 1 cut(s) 444
MaeII ACGT 2 cut(s) 180, 249
MaeIII GTNAC 2 cut(s) 460, 754
MalI GATC 2 cut(s) 195, 510
MboI GATC 2 cut(s) 193, 508
MboII GAAGA 4 cut(s) 334, 424, 752, 811
MfeI CAATTG 1 cut(s) 479
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 3 cut(s) 434, 479, 570
MnlI CCTC 5 cut(s) 25, 71, 415, 438, 535
MseI TTAA 4 cut(s) 59, 471, 588, 841
MslI CAYNNNNRTG 1 cut(s) 695
MspI CCGG 2 cut(s) 242, 458
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 479
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 2 cut(s) 264, 641
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 193, 508
NlaIII CATG 4 cut(s) 22, 45, 103, 663
NmeAIII GCCGAG 1 cut(s) 521
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 663
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 766
PfeI GAWTC 2 cut(s) 237, 594
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 5 cut(s) 10, 269, 303, 408, 637
Ppu21I YACGTR 2 cut(s) 181, 250
PstNI CAGNNNCTG 2 cut(s) 152, 216
RsaI GTAC 2 cut(s) 248, 812
RsaNI GTAC 2 cut(s) 247, 811
RseI CAYNNNNRTG 1 cut(s) 695
SaqAI TTAA 4 cut(s) 59, 471, 588, 841
SatI GCNGC 5 cut(s) 9, 268, 302, 407, 636
Sau3AI GATC 2 cut(s) 193, 508
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 689
SfaNI GCATC 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 695
Sse9I AATT 3 cut(s) 434, 479, 570
SsiI CCGC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 323, 476, 810
TaiI ACGT 2 cut(s) 183, 252
TaqI TCGA 3 cut(s) 400, 738, 769
TasI AATT 3 cut(s) 434, 479, 570
TfiI GAWTC 2 cut(s) 237, 594
Tru1I TTAA 4 cut(s) 59, 471, 588, 841
Tru9I TTAA 4 cut(s) 59, 471, 588, 841
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 5 cut(s) 8, 267, 301, 406, 635
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 5 cut(s) 35, 116, 148, 366, 543
TspGWI ACGGA 3 cut(s) 328, 434, 763
TspRI CASTG 1 cut(s) 328
XceI RCATGY 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.