Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009063

Physical Location & Seq

Genomic Coordinates Reverse (-)

47902355 .. 47902990

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATCCTTGAGAATGACCATAAATGTGATGAAATCGAGTTCTGCTTTGTAGGAAATGAGGGAGGACCTGGGGATCACAGCAATACTATCACCTTGGCTACCGGAGATGGATCTGCACCAGCATTACTACCTTTTACTCCACAAAAGAGACCAGAACATCAATTCCAAATGAATTCCCCCTATGCAAATCCAATGCCTTCGACTACAAACTATTTGAAACCATCTGCAGTTGGACCAAGTTACACACCAGCAAGCGGACCAAGCTACACGCCAGCAAACGGACCAGGCTACCTGCCAGCAAGCGGACCAGGCTACCTGCCAGCAAGTGGACCAAGCTATCAGCCTTCTAGAACTCCTCCACCGCCTCCACCACCTTCCAATGTTGGGTATGTACCTACTTTTCTCCCCAGGACAGATCAAATGACTGACACCTATATCAATATGCCCTCATCATCTGGAGCACCACCTCCTGGTCGTGGAACTAGGGCTGGAGGACCTGCTTTTGCAATGGGAATGGGTGCTGGAGCGCTGGCAGCCGGTGCCGTGATCTTCGGTGATGACTTTATGTCAGGATTTGATGTTCCTTCAGGCTTACAAGATGCTAGTGTTACCATATCAGCTGATCCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

211

Amino Acids

21.66

Weight (kDa)

4.53

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19985 AT4G19985 AT4G19985 AT4G19985 AT4G19985 AT4G19985 AT4G19985
fragaria_vesca	FvH4_7g26320
malus_domestica	MD07G1238600.v1.1
prunus_persica	Prupe.2G267400_v2.0.a1
pyrus_communis	pycom07g21460
rosa_chinensis	RchiOBHm_Chr1g0372781
rosa_multiflora	Rmu_co8249425.1_g000001 Rmu_sc0009717.1_g000005 Rmu_sc0032706.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284690
rosa_rugosa	Rorug01G0374300
rosa_samantha	Rh1BG346600 Rh1BG346700 Rh1CG359800 Rh1CG360000
rosa_wichuraiana	Rw1G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	300, 324, 505
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	2 cut(s)	326, 470
AciI	CCGC	3 cut(s)	255, 303, 362
AclWI	GGATC	3 cut(s)	81, 118, 617
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	393
AfeI	AGCGCT	1 cut(s)	528
AfiI	CCNNNNNNNGG	7 cut(s)	254, 278, 302, 326, 384, 470, 476
AgsI	TTSAA	1 cut(s)	217
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	5 cut(s)	67, 283, 307, 407, 469
AloI	GAACNNNNNNTCC	4 cut(s)	147, 179, 564, 596
AluBI	AGCT	3 cut(s)	264, 336, 620
AluI	AGCT	3 cut(s)	264, 336, 620
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	81, 118, 617
Aor51HI	AGCGCT	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
AsuHPI	GGTGA	2 cut(s)	82, 566
AvaII	GGWCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
BanI	GGYRCC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	2 cut(s)	101, 229
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	5 cut(s)	69, 285, 309, 409, 471
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	3 cut(s)	348, 483, 603
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	530
BfuAI	ACCTGC	3 cut(s)	300, 324, 505
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	5 cut(s)	69, 285, 309, 409, 471
Bme18I	GGWCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	5 cut(s)	69, 285, 309, 409, 471
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	3 cut(s)	477, 510, 543
BpuEI	CTTGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	68, 93, 407
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	7 cut(s)	254, 278, 302, 326, 384, 470, 476
Bse118I	RCCGGY	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	5 cut(s)	69, 285, 309, 409, 471
BseDI	CCNNGG	3 cut(s)	68, 93, 407
BseLI	CCNNNNNNNGG	7 cut(s)	254, 278, 302, 326, 384, 470, 476
BseMI	GCAATG	1 cut(s)	513
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	102, 537
BslI	CCNNNNNNNGG	7 cut(s)	254, 278, 302, 326, 384, 470, 476
BsmAI	GTCTC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
BspACI	CCGC	3 cut(s)	255, 303, 362
BspLI	GGNNCC	1 cut(s)	541
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	3 cut(s)	300, 324, 505
BspPI	GGATC	3 cut(s)	81, 118, 617
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	3 cut(s)	68, 93, 407
BssMI	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	5 cut(s)	69, 285, 309, 409, 471
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	6 cut(s)	253, 273, 297, 301, 321, 531
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	6 cut(s)	6, 76, 113, 418, 549, 625
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 309, 533, 539
BstNI	CCWGG	5 cut(s)	69, 285, 309, 409, 471
BstSCI	CCNGG	5 cut(s)	67, 283, 307, 407, 469
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BveI	ACCTGC	3 cut(s)	300, 324, 505
Cac8I	GCNNGC	6 cut(s)	253, 273, 297, 301, 321, 531
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
Csp6I	GTAC	1 cut(s)	392
CviQI	GTAC	1 cut(s)	392
DpnI	GATC	6 cut(s)	5, 75, 112, 417, 548, 624
DpnII	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
DriI	GACNNNNNGTC	1 cut(s)	565
Eam1105I	GACNNNNNGTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
Eco47III	AGCGCT	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	2 cut(s)	65, 494
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	5 cut(s)	67, 283, 307, 407, 469
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaiI	YATR	7 cut(s)	21, 183, 390, 435, 443, 566, 614
Fnu4HI	GCNGC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	3 cut(s)	348, 483, 603
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	534
GsuI	CTGGAG	3 cut(s)	477, 510, 543
HaeII	RGCGCY	1 cut(s)	530
HapII	CCGG	2 cut(s)	102, 537
HhaI	GCGC	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HpaII	CCGG	2 cut(s)	102, 537
HphI	GGTGA	2 cut(s)	82, 566
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188III	TCNNGA	3 cut(s)	348, 456, 570
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	207, 354, 384, 594
HpyCH4V	TGCA	4 cut(s)	116, 185, 227, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 309, 533, 539
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
LmnI	GCTCC	2 cut(s)	458, 524
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	3 cut(s)	348, 483, 603
MaeIII	GTNAC	2 cut(s)	239, 607
MalI	GATC	6 cut(s)	5, 75, 112, 417, 548, 624
MboI	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
MboII	GAAGA	1 cut(s)	541
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	2 cut(s)	161, 172
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	8 cut(s)	52, 56, 366, 375, 457, 477, 485, 636
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	102, 537
MspR9I	CCNGG	5 cut(s)	69, 285, 309, 409, 471
MvaI	CCWGG	5 cut(s)	69, 285, 309, 409, 471
MwoI	GCNNNNNNNGC	4 cut(s)	261, 309, 533, 539
NdeII	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
NlaIV	GGNNCC	1 cut(s)	541
PflMI	CCANNNNNTGG	2 cut(s)	326, 470
PkrI	GCNGC	1 cut(s)	535
PpuMI	RGGWCCY	2 cut(s)	65, 494
Psp5II	RGGWCCY	2 cut(s)	65, 494
Psp6I	CCWGG	5 cut(s)	67, 283, 307, 407, 469
PspGI	CCWGG	5 cut(s)	67, 283, 307, 407, 469
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
PspPPI	RGGWCCY	2 cut(s)	65, 494
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	6 cut(s)	3, 73, 110, 415, 546, 622
Sau96I	GGNCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
ScrFI	CCNGG	5 cut(s)	69, 285, 309, 409, 471
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	161, 172
SsiI	CCGC	3 cut(s)	255, 303, 362
SspMI	CTAG	3 cut(s)	348, 483, 603
StyD4I	CCNGG	5 cut(s)	67, 283, 307, 407, 469
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	2 cut(s)	36, 200
TasI	AATT	2 cut(s)	161, 172
TseI	GCWGC	1 cut(s)	533
TspDTI	ATGAA	2 cut(s)	45, 185
TspGWI	ACGGA	1 cut(s)	294
Van91I	CCANNNNNTGG	2 cut(s)	326, 470
VpaK11BI	GGWCC	7 cut(s)	65, 233, 257, 281, 305, 329, 494
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	347
XspI	CTAG	3 cut(s)	348, 483, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.