Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009063

Physical Location & Seq

Genomic Coordinates Reverse (-)

63307723 .. 63309295

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG360000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGTTAAAATGGGTAAGTTCCCGAGGCAAAACCCAACTGCAAAACATGAAAACACCTTCAAAATCAAAAGCACCAGCTACACTTCAAGCCTCAGTCCCTGTGTTCATATCCACAAACCCATCTCACGTAAAACCAGATGATCTCGTTGACCTATACAGCGCCTGCAATCTCAACGGCCACCGATTCCCGGAGTACGTGGACGGCGGAGATGGCTGCCGTGTAGTTGAAGGTATTGATGTGAACAAGCTACGTGTGGCTCTCTCACACAGTCAAGTCGTGGTCTCCGTCTTCTGCAAAGCAAATGATGTAGTTAGCAAAACTTCATCATCATTTTCGCAAAAAAATCGACAGCAGCAGAAGATTACGGAGGGTTTAGGAGAATTGTTTGAGAGGGTGGTGATGCCGGTGACACCATTTAACAGTCAATTGGTGGGTTTTGGCCGAGCTGTTTCTGATCAAGGATTGACAGCCTCCATCTACGATGTTATGGTATTCCCGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

169

Amino Acids

18.48

Weight (kDa)

9.03

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19985 AT4G19985 AT4G19985 AT4G19985 AT4G19985 AT4G19985 AT4G19985
fragaria_vesca	FvH4_7g26320
malus_domestica	MD07G1238600.v1.1
prunus_persica	Prupe.2G267400_v2.0.a1
pyrus_communis	pycom07g21460
rosa_chinensis	RchiOBHm_Chr1g0372781
rosa_multiflora	Rmu_co8249425.1_g000001 Rmu_sc0009717.1_g000005 Rmu_sc0032706.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284690
rosa_rugosa	Rorug01G0374300
rosa_samantha	Rh1BG346600 Rh1BG346700 Rh1CG359800 Rh1CG360000
rosa_wichuraiana	Rw1G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AcoI	YGGCCR	2 cut(s)	178, 442
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	63, 89, 230
AluBI	AGCT	3 cut(s)	80, 250, 449
AluI	AGCT	3 cut(s)	80, 250, 449
Alw26I	GTCTC	1 cut(s)	289
AlwNI	CAGNNNCTG	2 cut(s)	101, 165
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	2 cut(s)	178, 442
ApeKI	GCWGC	2 cut(s)	216, 355
AspLEI	GCGC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	412, 421
AvaI	CYCGRG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	203, 367
BccI	CCATC	3 cut(s)	130, 206, 485
BceAI	ACGGC	3 cut(s)	193, 204, 220
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	217, 356
BlsI	GCNGC	2 cut(s)	218, 357
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	191
BsaAI	YACGTR	3 cut(s)	130, 199, 254
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	203, 367
BshFI	GGCC	2 cut(s)	180, 444
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	191, 407
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	180, 444
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	142, 457
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	180, 444
BspCNI	CTCAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	142, 457
Bst4CI	ACNGT	2 cut(s)	272, 425
BstBAI	YACGTR	3 cut(s)	130, 199, 254
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	145, 460
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	142, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	203, 367
BstV2I	GAAGAC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	180, 444
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	2 cut(s)	101, 165
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	9 cut(s)	80, 92, 180, 216, 250, 260, 444, 449, 473
CviKI_1	RGCY	9 cut(s)	80, 92, 180, 216, 250, 260, 444, 449, 473
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	2 cut(s)	144, 459
DpnII	GATC	2 cut(s)	142, 457
EaeI	YGGCCR	2 cut(s)	178, 442
EciI	GGCGGA	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	24
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 110, 157, 491
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	217, 356
Fsp4HI	GCNGC	2 cut(s)	217, 356
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	217, 356
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	180, 444
HapII	CCGG	2 cut(s)	191, 407
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	191, 407
HphI	GGTGA	2 cut(s)	412, 421
Hpy166II	GTNNAC	3 cut(s)	151, 202, 244
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	2 cut(s)	24, 499
Hpy8I	GTNNAC	3 cut(s)	151, 202, 244
HpyAV	CCTTC	2 cut(s)	69, 224
HpyCH4III	ACNGT	2 cut(s)	272, 425
HpyCH4IV	ACGT	3 cut(s)	129, 198, 253
HpyCH4V	TGCA	3 cut(s)	43, 168, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	3 cut(s)	129, 198, 253
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	142, 457
LpnPI	CCDG	6 cut(s)	90, 114, 150, 178, 204, 420
Lsp1109I	GCAGC	2 cut(s)	203, 367
LweI	GCATC	1 cut(s)	393
MaeII	ACGT	3 cut(s)	129, 198, 253
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	144, 459
MboI	GATC	2 cut(s)	142, 457
MboII	GAAGA	2 cut(s)	283, 373
MfeI	CAATTG	1 cut(s)	428
MluCI	AATT	2 cut(s)	383, 428
MnlI	CCTC	5 cut(s)	20, 103, 364, 387, 484
MseI	TTAA	2 cut(s)	8, 420
MspI	CCGG	2 cut(s)	191, 407
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	142, 457
NlaIII	CATG	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	218, 357
Ppu21I	YACGTR	3 cut(s)	130, 199, 254
PstNI	CAGNNNCTG	2 cut(s)	101, 165
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	8, 420
SatI	GCNGC	2 cut(s)	217, 356
Sau3AI	GATC	2 cut(s)	142, 457
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	9 cut(s)	61, 82, 132, 156, 201, 235, 252, 256, 451
SfaNI	GCATC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	383, 428
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	272, 425
TaiI	ACGT	3 cut(s)	132, 201, 256
TaqI	TCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	383, 428
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	8, 420
Tru9I	TTAA	2 cut(s)	8, 420
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	216, 355
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	65, 97, 315
TspGWI	ACGGA	2 cut(s)	277, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.