Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004467

Physical Location & Seq

Genomic Coordinates Reverse (-)

197179 .. 199252

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1002000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTAATGGAAGGAGAGATCAAGGGCGAAGGTGAAGGTGGAGGTGGCGGAGAAGAGATCAGAGATGAAACTGCGGAGGGTGTGATTGAATATGTTGTTCAAATCGGAGACTACCGAAGGACGCAGAGGAAAGAATGCTATAACCTGGTGCGGCGTATGAAGCTCTTGCTGCTGCTTTTTGAAGAGACGCGGGAGCTCGATAAGCCAATTCCGGAGAGGGGTGCCGCTTGGTTGGAAAATTTGAAGATGATGCTTCTCATGGCCAAGAAATTGCTCAAAACTTGTCATGAGGGGAGCAAAATTTATCTGGCATTTGAAAGCGAGGCAATCATGGTTAGATTTCATGCGGTTCATGAAAGACTCGGTCAGGCTTTAGAAGGTTTGCCTGATGAACTTTGCATCTCAAATGAAGTCAAGGAACAGGTTGAACTGATGATCATGCAACTTAGACGAGCGAGGAAGCAAATGGATACGCAGGACATAGAACTCGCAATGGATATTATGGTGGTTTTGCCCAAAAAAGAAGATAGAAATGCTGATAGTGCCATTATAGAGAGGCTGGCCCAAAAGCTAGACCTGCAAAAATCTGAGAACCTTAAGATAGAAACAATAGCTGTGAGGAATCTGGTTAATGATAAAGAGAGAGGAGGGCCAAGTGCAGAGACTACGCAGCAAATCATTGATCTTCTAAACAAATTCAGACAAATAGCAGGAATGGAAGCGACCAATGTCCTTGGCGACCCTGTTATGCCTAAAATGCTCGAGAAGTGCCCGTCTTTGATGATCCCTCATGAATTCCTCTGTCCAATCACGCTAGAAATAATGACGGATCCTGTTATTGTTGCAAGTGGACTGACGTATAACAGAGAAAGCATACAAAAGTGGCTGGACACCAATCATAGGACATGTCCCAAGACCAGGCAGACTCTGGCTCACCTGTCACTAGCACCAATTTACGCTCTCAAAAATCTAATCATGCAGTGGTGTGAGAAGAACAACTTCCAGCTCCCGAAAAATGAAACTTCCACAGGCCAGGAAAGCTCCTCCACCGAACACAAAGAGGAGATCTCATCTTTGGTTGATCAGCTGTCCTCAAGTCACTTAAAAGTGCAAAGAAATGCTGCCATGAAGATTCGTTTGATCTCTAAAGAGAATCCAGAGAACAGAATTTTGGTTGCCAAAAGTGGAGGAATCCCACCACTGGTGCAACTTCTTTCCTATCCAGGTTCTAAAATTCAACAGTATGCAGTAACGGCTCTTTTGAATTTATCGATTGACAAAACAAACAAGAAACTGATAACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

436

Amino Acids

49.33

Weight (kDa)

6.51

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	43 - 152	3.4e-34	PUB10-like, N-terminal domain
U-box	PF04564	262 - 332	7e-23	U-box domain
Arm	PF00514	385 - 424	3.8e-10	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42340
fragaria_vesca	FvH4_2g16600 FvH4_2g16600 FvH4_2g16600 FvH4_2g16600 FvH4_2g37350
malus_domestica	MD05G1134200.v1.1 MD08G1002000.v1.1 MD15G1001100.v1.1
prunus_persica	Prupe.1G353700_v2.0.a1 Prupe.8G178000_v2.0.a1 Prupe.8G178000_v2.0.a1
pyrus_communis	pycom15g00050
rosa_chinensis	RchiOBHm_Chr6g0280661 RchiOBHm_Chr6g0304371
rosa_laevigata	RLG00000010986 RLG00000013038
rosa_multiflora	Rmu_sc0000976.1_g000006 Rmu_ssc0000218.1_g000042
rosa_roxburghii	Rroxscaffold_7G00187780
rosa_rugosa	Rorug06G0133500 Rorug06G0330800
rosa_samantha	Rh6AG246100 Rh6AG443800 Rh6BG248400 Rh6BG458600 Rh6CG249700 Rh6CG456600 Rh6DG241000 Rh6DG443300
rosa_wichuraiana	Rw6G021300 Rw6G038520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	6 cut(s)	48, 74, 151, 190, 225, 347
AclWI	GGATC	3 cut(s)	778, 824, 837
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	7 cut(s)	238, 300, 695, 794, 1167, 1233, 1264
AfiI	CCNNNNNNNGG	4 cut(s)	218, 900, 918, 1201
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	905
AgsI	TTSAA	8 cut(s)	89, 101, 182, 244, 317, 428, 1238, 1264
AjnI	CCWGG	4 cut(s)	144, 917, 1032, 1222
AjuI	GAANNNNNNNTTGG	2 cut(s)	1154, 1186
AluBI	AGCT	7 cut(s)	163, 196, 571, 614, 1006, 1041, 1087
AluI	AGCT	7 cut(s)	163, 196, 571, 614, 1006, 1041, 1087
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	3 cut(s)	102, 179, 656
AlwI	GGATC	3 cut(s)	778, 824, 837
AlwNI	CAGNNNCTG	1 cut(s)	928
Ama87I	CYCGRG	1 cut(s)	761
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	4 cut(s)	261, 561, 650, 1030
ApeKI	GCWGC	4 cut(s)	169, 172, 670, 1121
ApoI	RAATTY	7 cut(s)	238, 300, 695, 794, 1167, 1233, 1264
Asp700I	GAANNNNTTC	1 cut(s)	998
AspS9I	GGNCC	2 cut(s)	562, 650
AsuHPI	GGTGA	2 cut(s)	44, 926
AvaI	CYCGRG	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	773
BalI	TGGCCA	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	156, 159, 682, 1108
BceAI	ACGGC	1 cut(s)	1269
BciT130I	CCWGG	4 cut(s)	146, 919, 1034, 1224
BciVI	GTATCC	1 cut(s)	463
BclI	TGATCA	2 cut(s)	435, 1081
BcoDI	GTCTC	3 cut(s)	102, 179, 656
BfaI	CTAG	3 cut(s)	572, 815, 944
BfrI	CTTAAG	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	463
BglII	AGATCT	1 cut(s)	1065
BisI	GCNGC	6 cut(s)	152, 170, 173, 225, 671, 1122
BlsI	GCNGC	6 cut(s)	153, 171, 174, 226, 672, 1123
Bme1390I	CCNGG	4 cut(s)	146, 919, 1034, 1224
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	562, 650
BmiI	GGNNCC	2 cut(s)	223, 831
BmrFI	CCNGG	4 cut(s)	146, 919, 1034, 1224
BmsI	GCATC	2 cut(s)	240, 408
BoxI	GACNNNNGTC	1 cut(s)	728
BplI	GAGNNNNNCTC	2 cut(s)	1052, 1084
BpuEI	CTTGAG	1 cut(s)	1078
Bsa29I	ATCGAT	1 cut(s)	1271
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 900, 918, 1201
Bse1I	ACTGG	1 cut(s)	1206
Bse3DI	GCAATG	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	4 cut(s)	146, 919, 1034, 1224
BseCI	ATCGAT	1 cut(s)	1271
BseDI	CCNNGG	1 cut(s)	733
BseLI	CCNNNNNNNGG	4 cut(s)	218, 900, 918, 1201
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	1206
BseRI	GAGGAG	3 cut(s)	660, 1033, 1076
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	4 cut(s)	156, 159, 682, 1108
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	263, 563, 652, 1032
BshNI	GGYRCC	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	1271
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	4 cut(s)	218, 900, 918, 1201
BsmAI	GTCTC	3 cut(s)	102, 179, 656
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	263, 563, 652, 1032
BsoBI	CYCGRG	1 cut(s)	761
Bsp1286I	GDGCHC	2 cut(s)	198, 773
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
BspACI	CCGC	6 cut(s)	48, 74, 151, 190, 225, 347
BspANI	GGCC	4 cut(s)	263, 563, 652, 1032
BspCNI	CTCAG	1 cut(s)	580
BspDI	ATCGAT	1 cut(s)	1271
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	190
BspHI	TCATGA	3 cut(s)	286, 352, 790
BspLI	GGNNCC	2 cut(s)	223, 831
BspMI	ACCTGC	1 cut(s)	585
BspPI	GGATC	3 cut(s)	778, 824, 837
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	1206
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	4 cut(s)	146, 919, 1034, 1224
Bst4CI	ACNGT	1 cut(s)	1242
Bst6I	CTCTTC	2 cut(s)	48, 177
BstAFI	CTTAAG	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	446, 588
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	9 cut(s)	21, 60, 438, 685, 786, 832, 1068, 1084, 1143
BstMAI	GTCTC	3 cut(s)	102, 179, 656
BstMBI	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
BstMWI	GCNNNNNNNGC	8 cut(s)	160, 169, 202, 542, 577, 757, 1038, 1253
BstNI	CCWGG	4 cut(s)	146, 919, 1034, 1224
BstNSI	RCATGY	1 cut(s)	909
BstPAI	GACNNNNGTC	1 cut(s)	728
BstSCI	CCNGG	4 cut(s)	144, 917, 1032, 1222
BstSLI	GKGCMC	1 cut(s)	773
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	156, 159, 682, 1108
BstX2I	RGATCY	2 cut(s)	829, 1065
BstYI	RGATCY	2 cut(s)	829, 1065
Bsu15I	ATCGAT	1 cut(s)	1271
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	4 cut(s)	263, 563, 652, 1032
BsuTUI	ATCGAT	1 cut(s)	1271
BtsI	GCAGTG	1 cut(s)	986
BtsIMutI	CAGTG	2 cut(s)	986, 1199
BveI	ACCTGC	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	928
CciI	TCATGA	3 cut(s)	286, 352, 790
Cfr13I	GGNCC	2 cut(s)	562, 650
ClaI	ATCGAT	1 cut(s)	1271
CseI	GACGC	2 cut(s)	130, 196
CsiI	ACCWGGT	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	446, 588
DpnI	GATC	9 cut(s)	20, 59, 437, 684, 785, 831, 1067, 1083, 1142
DpnII	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	48, 177
EarI	CTCTTC	2 cut(s)	48, 177
EciI	GGCGGA	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	794
EcoRII	CCWGG	4 cut(s)	144, 917, 1032, 1222
EcoT14I	CCWWGG	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	179
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	1 cut(s)	894
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	2 cut(s)	435, 1081
Fnu4HI	GCNGC	6 cut(s)	152, 170, 173, 225, 671, 1122
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	6 cut(s)	152, 170, 173, 225, 671, 1122
FspBI	CTAG	3 cut(s)	572, 815, 944
GluI	GCNGC	6 cut(s)	152, 170, 173, 225, 671, 1122
HaeIII	GGCC	4 cut(s)	263, 563, 652, 1032
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	2 cut(s)	130, 196
HinfI	GANTC	6 cut(s)	360, 622, 925, 1132, 1153, 1191
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	44, 926
Hpy166II	GTNNAC	1 cut(s)	851
Hpy188I	TCNGA	4 cut(s)	62, 107, 589, 701
Hpy188III	TCNNGA	7 cut(s)	212, 287, 353, 763, 791, 1009, 1157
Hpy8I	GTNNAC	1 cut(s)	851
HpyAV	CCTTC	5 cut(s)	5, 23, 29, 111, 371
HpyCH4III	ACNGT	1 cut(s)	1242
HpyCH4IV	ACGT	1 cut(s)	857
HpyCH4V	TGCA	9 cut(s)	399, 442, 580, 659, 845, 979, 1111, 1207, 1247
HpyF10VI	GCNNNNNNNGC	8 cut(s)	160, 169, 202, 542, 577, 757, 1038, 1253
HpyF3I	CTNAG	2 cut(s)	446, 588
HpySE526I	ACGT	1 cut(s)	857
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	435, 1081
Kzo9I	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
LmnI	GCTCC	4 cut(s)	193, 294, 1011, 1046
Lsp1109I	GCAGC	4 cut(s)	156, 159, 682, 1108
LweI	GCATC	2 cut(s)	240, 408
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	3 cut(s)	572, 815, 944
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	3 cut(s)	939, 1097, 1249
MalI	GATC	9 cut(s)	20, 59, 437, 684, 785, 831, 1067, 1083, 1142
MboI	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
MboII	GAAGA	7 cut(s)	65, 194, 256, 536, 677, 1003, 1141
MflI	RGATCY	2 cut(s)	829, 1065
MhlI	GDGCHC	2 cut(s)	198, 773
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	354, 919
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	998
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	3 cut(s)	597, 630, 1103
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	1087
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	4 cut(s)	146, 919, 1034, 1224
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	4 cut(s)	146, 919, 1034, 1224
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	8 cut(s)	160, 169, 202, 542, 577, 757, 1038, 1253
NdeII	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
NlaIV	GGNNCC	2 cut(s)	223, 831
NmuCI	GTSAC	2 cut(s)	939, 1097
NspI	RCATGY	1 cut(s)	909
PaeR7I	CTCGAG	1 cut(s)	761
PagI	TCATGA	3 cut(s)	286, 352, 790
PciI	ACATGT	1 cut(s)	905
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	998
PfeI	GAWTC	4 cut(s)	622, 1132, 1153, 1191
PflFI	GACNNNGTC	1 cut(s)	363
PkrI	GCNGC	6 cut(s)	153, 171, 174, 226, 672, 1123
PleI	GAGTC	2 cut(s)	354, 919
PpsI	GAGTC	2 cut(s)	354, 919
PscI	ACATGT	1 cut(s)	905
PshAI	GACNNNNGTC	1 cut(s)	728
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	4 cut(s)	144, 917, 1032, 1222
PspGI	CCWGG	4 cut(s)	144, 917, 1032, 1222
PspN4I	GGNNCC	2 cut(s)	223, 831
PspPI	GGNCC	2 cut(s)	562, 650
PstNI	CAGNNNCTG	1 cut(s)	928
PsuI	RGATCY	2 cut(s)	829, 1065
PsyI	GACNNNGTC	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	1087
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	597, 630, 1103
SatI	GCNGC	6 cut(s)	152, 170, 173, 225, 671, 1122
Sau3AI	GATC	9 cut(s)	18, 57, 435, 682, 783, 829, 1065, 1081, 1140
Sau96I	GGNCC	2 cut(s)	562, 650
SchI	GAGTC	2 cut(s)	354, 919
ScrFI	CCNGG	4 cut(s)	146, 919, 1034, 1224
SduI	GDGCHC	2 cut(s)	198, 773
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	240, 408
Sfr274I	CTCGAG	1 cut(s)	761
SlaI	CTCGAG	1 cut(s)	761
SmlI	CTYRAG	3 cut(s)	596, 761, 1093
SmoI	CTYRAG	3 cut(s)	596, 761, 1093
SsiI	CCGC	6 cut(s)	48, 74, 151, 190, 225, 347
SspMI	CTAG	3 cut(s)	572, 815, 944
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	4 cut(s)	144, 917, 1032, 1222
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	1 cut(s)	1242
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	3 cut(s)	198, 762, 1271
TaqII	GACCGA	1 cut(s)	353
TauI	GCSGC	2 cut(s)	154, 227
TfiI	GAWTC	4 cut(s)	622, 1132, 1153, 1191
Tru1I	TTAA	3 cut(s)	597, 630, 1103
Tru9I	TTAA	3 cut(s)	597, 630, 1103
TscAI	CASTG	2 cut(s)	986, 1206
TseFI	GTSAC	2 cut(s)	939, 1097
TseI	GCWGC	4 cut(s)	169, 172, 670, 1121
Tsp45I	GTSAC	2 cut(s)	939, 1097
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	2 cut(s)	986, 1206
Tth111I	GACNNNGTC	1 cut(s)	363
Vha464I	CTTAAG	1 cut(s)	596
XapI	RAATTY	7 cut(s)	238, 300, 695, 794, 1167, 1233, 1264
XceI	RCATGY	1 cut(s)	909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XhoI	CTCGAG	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	998
XspI	CTAG	3 cut(s)	572, 815, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.