Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000976.1

Orthogroup ID

OG0004467

Physical Location & Seq

Genomic Coordinates Forward (+)

26765 .. 29444

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000976.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

atggcagagagggagatggtgatggagggaattagaagggatcattatcatgggaagaagaatgttggtggtggtggtgaagatgaaagcgatggcggcagcgttgaggaattgatgggagtgattgagaccgttggatcgtattcggggtttcgaagagctcacaggaaggagtgcttgagcttggtgaggaggttgaagctattgctgcctctattggaggaaataagggagttggagtactactccaatcaggctttgagctctttgtctaatttgaagaaggcacttgcttctgccaagaagttgctcaagaattgtagctgtgggagtaagatatacttgactctggaaagtgaggcaatgatgggaaggtttcatgatgtttatgataaactaagccaggctttggatcatttcccttatgttgagcttgggatctcaattgaagtcaaagagcaagttcaactaatgcgaatgcaactcaaacgagcaaagaaacgggcagatacacaggatatagagctggcaatggacctgatggttgtgttctctaagaaaaatgatgacaggaatgcggataaagcgatacttgaaagactagccaacaagttggaactacaaactattgcagacttgaaagaggaaacaatagctgttagaaagctagctaaaaggagatcagcaaggcagaatgctgaaagcattcaacaggtcactgatcttttgggaaggtttaaagaaaatgcagggatatatgaggacttcttgctcgatggtcctgtttccacgagaaatctgaggcagtgccggtctttgttgatccccaatgagtttctatgcccgattacgttggagatcatgactgatcctgttattgttgcaactggacagacatatgaaagagcaagcatacaaaagtggctgggttccaatcactacacctgcccaaagacggggcaaacattggatcatgtatcgctagcaccaaattttgctctcaagaatctaatccagcaatggtgtgagaagaatcattttgagctgcccaagaaggattctaatgcattttctgatggctctactgctgaaattttagaggaaatatcttccttagtgtatgatctatcttcatgtcagctggatgttttaaaagaagcaatttttaagattcgaatgctctctaaagagaatcaggagaatagagttctgatagctaagggtggagggattccccagttgattaagctcttgtcacatccagattccaagattcaagaacacacagtgacagctcttctaaatttatcgattgatgagaccaacaaaagactcatagcagggaaagagtctattcgtgctataattgagatcttgcagcatggaacagatgaagctagagagaattctgctgctgcattgttcagcttatcaatgctcaatgagaacaaagtacttgttgggactttgaatggaattcctcctttggtagatcttttgcagaatggaacaaccagaggtagaaaggatgctgccactgcattatttaacttgtctttgaaccaagccaacaagtctagggccattgacgcaggtctaataccacccttgattcatctacttgaggataagaacttgggcatgactgatgaagccctctcaattttgttactccttgcatcacatcctgagggtcgaaatgagattgggagattatctttcattgaaactctggttggaattatcaagagtggaacccccaagaacaaggaatgtgctacatcggttcttctagagctcggattgaacaattcgtctttcactttggctgcacttcagtatggtgtgtatgagtatctggtggaggtggctagatgtggaaccaacagagctcaaaggaaagcaaactcccttttgcagcatatgagtaaatgtgagcacattccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

649

Amino Acids

72.37

Weight (kDa)

6.96

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42340
fragaria_vesca	FvH4_2g16600 FvH4_2g16600 FvH4_2g16600 FvH4_2g16600 FvH4_2g37350
malus_domestica	MD05G1134200.v1.1 MD08G1002000.v1.1 MD15G1001100.v1.1
prunus_persica	Prupe.1G353700_v2.0.a1 Prupe.8G178000_v2.0.a1 Prupe.8G178000_v2.0.a1
pyrus_communis	pycom15g00050
rosa_chinensis	RchiOBHm_Chr6g0280661 RchiOBHm_Chr6g0304371
rosa_laevigata	RLG00000010986 RLG00000013038
rosa_multiflora	Rmu_sc0000976.1_g000006 Rmu_ssc0000218.1_g000042
rosa_roxburghii	Rroxscaffold_7G00187780
rosa_rugosa	Rorug06G0133500 Rorug06G0330800
rosa_samantha	Rh6AG246100 Rh6AG443800 Rh6BG248400 Rh6BG458600 Rh6CG249700 Rh6CG456600 Rh6DG241000 Rh6DG443300
rosa_wichuraiana	Rw6G021300 Rw6G038520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	953
Acc36I	ACCTGC	2 cut(s)	953, 1583
AccB7I	CCANNNNNTGG	1 cut(s)	409
AciI	CCGC	2 cut(s)	96, 578
AclWI	GGATC	7 cut(s)	48, 145, 420, 446, 817, 863, 978
AcsI	RAATTY	5 cut(s)	991, 1092, 1303, 1405, 1476
AcuI	CTGAAG	1 cut(s)	1820
AdeI	CACNNNGTG	1 cut(s)	1288
AfaI	GTAC	2 cut(s)	242, 1455
AfiI	CCNNNNNNNGG	3 cut(s)	409, 955, 956
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	1719, 1751
Alw21I	GWGCWC	5 cut(s)	163, 266, 1800, 1894, 1941
Alw26I	GTCTC	2 cut(s)	122, 1313
AlwI	GGATC	7 cut(s)	48, 145, 420, 446, 817, 863, 978
AoxI	GGCC	1 cut(s)	1581
ApeKI	GCWGC	9 cut(s)	99, 208, 1045, 1378, 1412, 1415, 1532, 1829, 1918
ApoI	RAATTY	5 cut(s)	991, 1092, 1303, 1405, 1476
Asp700I	GAANNNNTTC	1 cut(s)	705
AspS9I	GGNCC	3 cut(s)	535, 779, 1581
AsuHPI	GGTGA	3 cut(s)	31, 89, 199
AsuII	TTCGAA	2 cut(s)	154, 1174
AsuNHI	GCTAGC	2 cut(s)	667, 982
AvaII	GGWCC	2 cut(s)	535, 779
AxyI	CCTNAGG	1 cut(s)	1689
BanII	GRGCYC	4 cut(s)	163, 266, 1800, 1894
BauI	CACGAG	1 cut(s)	790
Bbv12I	GWGCWC	5 cut(s)	163, 266, 1800, 1894, 1941
BbvI	GCAGC	9 cut(s)	111, 195, 1032, 1390, 1399, 1402, 1519, 1816, 1930
BccI	CCATC	8 cut(s)	10, 16, 86, 109, 361, 535, 770, 1070
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	122, 1313
BfaI	CTAG	7 cut(s)	602, 668, 983, 1398, 1578, 1793, 1872
BfuAI	ACCTGC	2 cut(s)	953, 1583
BglII	AGATCT	2 cut(s)	1371, 1492
BmcAI	AGTACT	2 cut(s)	242, 1455
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	2 cut(s)	535, 779
BmgT120I	GGNCC	3 cut(s)	535, 779, 1581
BmiI	GGNNCC	3 cut(s)	931, 1756, 1882
BmrFI	CCNGG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	1231
BmsI	GCATC	2 cut(s)	1519, 1688
BmtI	GCTAGC	2 cut(s)	671, 986
BmuI	ACTGGG	1 cut(s)	1231
BoxI	GACNNNNGTC	1 cut(s)	1593
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu10I	CCTNAGC	1 cut(s)	1218
Bpu14I	TTCGAA	2 cut(s)	154, 1174
BpuEI	CTTGAG	4 cut(s)	199, 296, 986, 1643
Bsa29I	ATCGAT	1 cut(s)	1310
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	122, 1313
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 955, 956
Bse118I	RCCGGY	1 cut(s)	810
Bse1I	ACTGG	2 cut(s)	892, 1237
Bse21I	CCTNAGG	1 cut(s)	1689
Bse3DI	GCAATG	3 cut(s)	369, 537, 1025
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	404
BseCI	ATCGAT	1 cut(s)	1310
BseGI	GGATG	4 cut(s)	1150, 1258, 1534, 1684
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	409, 955, 956
BseMI	GCAATG	3 cut(s)	369, 537, 1025
BseMII	CTCAG	2 cut(s)	791, 1680
BseNI	ACTGG	2 cut(s)	892, 1237
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	9 cut(s)	111, 195, 1032, 1390, 1399, 1402, 1519, 1816, 1930
BseYI	CCCAGC	1 cut(s)	925
BsgI	GTGCAG	1 cut(s)	1815
BshFI	GGCC	1 cut(s)	1583
BshVI	ATCGAT	1 cut(s)	1310
BsiHKAI	GWGCWC	5 cut(s)	163, 266, 1800, 1894, 1941
BsiSI	CCGG	1 cut(s)	811
BslFI	GGGAC	1 cut(s)	1477
BslI	CCNNNNNNNGG	3 cut(s)	409, 955, 956
BsmAI	GTCTC	2 cut(s)	122, 1313
BsmFI	GGGAC	1 cut(s)	1477
BsmI	GAATGC	5 cut(s)	483, 580, 700, 705, 1182
BsnI	GGCC	1 cut(s)	1583
Bso31I	GGTCTC	2 cut(s)	122, 1313
Bsp119I	TTCGAA	2 cut(s)	154, 1174
Bsp1286I	GDGCHC	5 cut(s)	163, 266, 1800, 1894, 1941
BspACI	CCGC	2 cut(s)	96, 578
BspANI	GGCC	1 cut(s)	1583
BspCNI	CTCAG	2 cut(s)	792, 1681
BspDI	ATCGAT	1 cut(s)	1310
BspHI	TCATGA	2 cut(s)	379, 861
BspLI	GGNNCC	3 cut(s)	931, 1756, 1882
BspMI	ACCTGC	2 cut(s)	953, 1583
BspOI	GCTAGC	2 cut(s)	671, 986
BspPI	GGATC	7 cut(s)	48, 145, 420, 446, 817, 863, 978
BspQI	GCTCTTC	2 cut(s)	151, 1302
BspT104I	TTCGAA	2 cut(s)	154, 1174
BspTNI	GGTCTC	2 cut(s)	122, 1313
BsrDI	GCAATG	3 cut(s)	369, 537, 1025
BsrFI	RCCGGY	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	892, 1237
BssAI	RCCGGY	1 cut(s)	810
BssSI	CACGAG	1 cut(s)	790
Bst2BI	CACGAG	1 cut(s)	790
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	133, 1288
Bst6I	CTCTTC	2 cut(s)	151, 1302
BstBI	TTCGAA	2 cut(s)	154, 1174
BstC8I	GCNNGC	4 cut(s)	528, 669, 910, 984
BstDEI	CTNAG	6 cut(s)	398, 555, 800, 1114, 1218, 1689
BstF5I	GGATG	4 cut(s)	1150, 1258, 1534, 1684
BstMAI	GTCTC	2 cut(s)	122, 1313
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 208, 584, 1538, 1589
BstNI	CCWGG	1 cut(s)	404
BstPAI	GACNNNNGTC	1 cut(s)	1593
BstSCI	CCNGG	1 cut(s)	402
BstV1I	GCAGC	9 cut(s)	111, 195, 1032, 1390, 1399, 1402, 1519, 1816, 1930
BstX2I	RGATCY	3 cut(s)	438, 1371, 1492
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	3 cut(s)	438, 1371, 1492
Bsu15I	ATCGAT	1 cut(s)	1310
Bsu36I	CCTNAGG	1 cut(s)	1689
BsuRI	GGCC	1 cut(s)	1583
BsuTUI	ATCGAT	1 cut(s)	1310
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	1150, 1258, 1534, 1684
BtsI	GCAGTG	2 cut(s)	812, 1536
BtsIMutI	CAGTG	4 cut(s)	717, 812, 1293, 1536
BveI	ACCTGC	2 cut(s)	953, 1583
Cac8I	GCNNGC	4 cut(s)	528, 669, 910, 984
CciI	TCATGA	2 cut(s)	379, 861
Cfr10I	RCCGGY	1 cut(s)	810
Cfr13I	GGNCC	3 cut(s)	535, 779, 1581
ClaI	ATCGAT	1 cut(s)	1310
CseI	GACGC	1 cut(s)	1598
Csp6I	GTAC	2 cut(s)	241, 1454
CviAII	CATG	7 cut(s)	50, 380, 862, 974, 1134, 1382, 1642
CviQI	GTAC	2 cut(s)	241, 1454
DdeI	CTNAG	6 cut(s)	398, 555, 800, 1114, 1218, 1689
DraI	TTTAAA	2 cut(s)	739, 1152
DraIII	CACNNNGTG	1 cut(s)	1288
Eam1104I	CTCTTC	2 cut(s)	151, 1302
EarI	CTCTTC	2 cut(s)	151, 1302
Ecl136II	GAGCTC	4 cut(s)	161, 264, 1798, 1892
Eco24I	GRGCYC	4 cut(s)	163, 266, 1800, 1894
Eco31I	GGTCTC	2 cut(s)	122, 1313
Eco47I	GGWCC	2 cut(s)	535, 779
Eco53kI	GAGCTC	4 cut(s)	161, 264, 1798, 1892
Eco57I	CTGAAG	1 cut(s)	1820
Eco81I	CCTNAGG	1 cut(s)	1689
EcoICRI	GAGCTC	4 cut(s)	161, 264, 1798, 1892
EcoRI	GAATTC	2 cut(s)	1405, 1476
EcoRII	CCWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	1069
EcoT38I	GRGCYC	4 cut(s)	163, 266, 1800, 1894
FaeI	CATG	7 cut(s)	53, 383, 865, 977, 1137, 1385, 1645
FalI	AAGNNNNNCTT	8 cut(s)	161, 193, 326, 358, 391, 423, 576, 608
FaqI	GGGAC	1 cut(s)	1477
FatI	CATG	7 cut(s)	49, 379, 861, 973, 1133, 1381, 1641
FauNDI	CATATG	2 cut(s)	898, 1923
FokI	GGATG	4 cut(s)	1157, 1245, 1541, 1671
FriOI	GRGCYC	4 cut(s)	163, 266, 1800, 1894
FspBI	CTAG	7 cut(s)	602, 668, 983, 1398, 1578, 1793, 1872
GsaI	CCCAGC	1 cut(s)	929
HaeIII	GGCC	1 cut(s)	1583
HapII	CCGG	1 cut(s)	811
HgaI	GACGC	1 cut(s)	1598
Hin1II	CATG	7 cut(s)	53, 383, 865, 977, 1137, 1385, 1645
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	3 cut(s)	31, 89, 199
Hpy188I	TCNGA	4 cut(s)	801, 1075, 1212, 1802
HpyAV	CCTTC	6 cut(s)	30, 163, 277, 366, 726, 1048
HpyCH4III	ACNGT	2 cut(s)	133, 1288
HpyCH4IV	ACGT	1 cut(s)	851
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 208, 584, 1538, 1589
HpyF3I	CTNAG	6 cut(s)	398, 555, 800, 1114, 1218, 1689
HpySE526I	ACGT	1 cut(s)	851
Hsp92II	CATG	7 cut(s)	53, 383, 865, 977, 1137, 1385, 1645
LguI	GCTCTTC	2 cut(s)	151, 1302
Lsp1109I	GCAGC	9 cut(s)	111, 195, 1032, 1390, 1399, 1402, 1519, 1816, 1930
LweI	GCATC	2 cut(s)	1519, 1688
MaeI	CTAG	7 cut(s)	602, 668, 983, 1398, 1578, 1793, 1872
MaeII	ACGT	1 cut(s)	851
MaeIII	GTNAC	4 cut(s)	715, 1254, 1288, 1668
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	438, 1371, 1492
MhlI	GDGCHC	5 cut(s)	163, 266, 1800, 1894, 1941
MlyI	GAGTC	3 cut(s)	340, 1326, 1358
MmeI	TCCRAC	5 cut(s)	115, 216, 594, 834, 1717
Mph1103I	ATGCAT	1 cut(s)	1069
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	6 cut(s)	738, 1151, 1167, 1245, 1548, 1948
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	1141
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	5 cut(s)	483, 580, 700, 705, 1182
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	5 cut(s)	96, 208, 584, 1538, 1589
NdeI	CATATG	2 cut(s)	898, 1923
NheI	GCTAGC	2 cut(s)	667, 982
NlaIII	CATG	7 cut(s)	53, 383, 865, 977, 1137, 1385, 1645
NlaIV	GGNNCC	3 cut(s)	931, 1756, 1882
NmuCI	GTSAC	3 cut(s)	715, 1254, 1288
NsiI	ATGCAT	1 cut(s)	1069
NspV	TTCGAA	2 cut(s)	154, 1174
PagI	TCATGA	2 cut(s)	379, 861
PaqCI	CACCTGC	1 cut(s)	953
PciSI	GCTCTTC	2 cut(s)	151, 1302
PctI	GAATGC	5 cut(s)	483, 580, 700, 705, 1182
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	9 cut(s)	1006, 1033, 1058, 1171, 1192, 1231, 1265, 1273, 1612
PflMI	CCANNNNNTGG	1 cut(s)	409
PleI	GAGTC	3 cut(s)	340, 1326, 1357
PpsI	GAGTC	3 cut(s)	340, 1326, 1357
PshAI	GACNNNNGTC	1 cut(s)	1593
Psp124BI	GAGCTC	4 cut(s)	163, 266, 1800, 1894
Psp6I	CCWGG	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	3 cut(s)	931, 1756, 1882
PspPI	GGNCC	3 cut(s)	535, 779, 1581
PsuI	RGATCY	3 cut(s)	438, 1371, 1492
PvuII	CAGCTG	1 cut(s)	1141
RsaI	GTAC	2 cut(s)	242, 1455
RsaNI	GTAC	2 cut(s)	241, 1454
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	4 cut(s)	163, 266, 1800, 1894
SapI	GCTCTTC	2 cut(s)	151, 1302
SaqAI	TTAA	6 cut(s)	738, 1151, 1167, 1245, 1548, 1948
Sau96I	GGNCC	3 cut(s)	535, 779, 1581
ScaI	AGTACT	2 cut(s)	242, 1455
SchI	GAGTC	3 cut(s)	340, 1326, 1358
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	5 cut(s)	163, 266, 1800, 1894, 1941
SfaNI	GCATC	2 cut(s)	1519, 1688
SfuI	TTCGAA	2 cut(s)	154, 1174
SinI	GGWCC	2 cut(s)	535, 779
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	4 cut(s)	178, 311, 1001, 1622
SmoI	CTYRAG	4 cut(s)	178, 311, 1001, 1622
SsiI	CCGC	2 cut(s)	96, 578
SspMI	CTAG	7 cut(s)	602, 668, 983, 1398, 1578, 1793, 1872
SstI	GAGCTC	4 cut(s)	163, 266, 1800, 1894
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	133, 1288
TaiI	ACGT	1 cut(s)	854
TaqI	TCGA	5 cut(s)	154, 774, 1174, 1310, 1696
TatI	WGTACW	2 cut(s)	240, 1453
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	9 cut(s)	1006, 1033, 1058, 1171, 1192, 1231, 1265, 1273, 1612
Tru1I	TTAA	6 cut(s)	738, 1151, 1167, 1245, 1548, 1948
Tru9I	TTAA	6 cut(s)	738, 1151, 1167, 1245, 1548, 1948
TscAI	CASTG	4 cut(s)	724, 812, 1293, 1543
TseFI	GTSAC	3 cut(s)	715, 1254, 1288
TseI	GCWGC	9 cut(s)	99, 208, 1045, 1378, 1412, 1415, 1532, 1829, 1918
Tsp45I	GTSAC	3 cut(s)	715, 1254, 1288
TspDTI	ATGAA	8 cut(s)	99, 368, 915, 1122, 1407, 1604, 1665, 1711
TspRI	CASTG	4 cut(s)	724, 812, 1293, 1543
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	535, 779
XapI	RAATTY	5 cut(s)	991, 1092, 1303, 1405, 1476
XbaI	TCTAGA	1 cut(s)	1792
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	7 cut(s)	602, 668, 983, 1398, 1578, 1793, 1872
ZrmI	AGTACT	2 cut(s)	242, 1455
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.