MD08G1033100.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013791
Physical Location & Seq
Reverse (-)
2345350 .. 2349432
4083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1033100.v1.1.491

Sequence Viewer

Length: 1608 bp
ATGGGGGAGCTGGATAATTCCTCATCGCCGTTACCGACGGTTTCAACGGCTTCCGGCGGCGAAGCCAGTTTAACTTCCTCCGCTCGCGAAGCCATGACTCGTTCGGAGCCGCCGCAAAAGAAAAAGCGAAACCTTCCCGGAATGCCAGATCCCGAAGCGGATGTGATCGCGCTGTCGCCGACGACTCTGCTTGCAACGAACCGTTTCGTGTGCGAGATCTGCAGCAAAGGCTTCCAGCGGGACCAGAACCTGCAGCTCCACCGGCGGGGCCACAACCTGCCGTGGAAGCTGAAGCAGCGGACGAGCAAAGAAGTACGGAAGCGGGTCTACGTCTGCCCCGAGACCTCCTGCGTGCACCACAACCCGACCCGGGCGCTTGGCGACCTGACGGGGATTAAGAAGCACTTTTGTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCAGTGCAGTCCGATTGGAAGGCGCACATGAAGACCTGTGGCACCCGAGAGTACAGATGCGATTGCGGGACTTTATTCTCTAGGAGGGATAGCTTCATAACGCACAGGGCGTTCTGCGACGCTTTGGCGGAGGAGAGCGCGAAGACTCAAACCCTAATGATTGGGTCCGACGGAAGTACGAACCCGAGTTCAAATCCGACTCCGAGTGCGAAGAGTACGGTGGTGGCGTCGCCGCCTCCACCGCCTCACACACCGTCAAACACGGTGGTGTCTCCGGCCTTGTCTATTCAAAGCTCAGAATTGCCAGAAAACCCAATTGGCCTGTCCCCTCCGGCGCCAGCCACGACATGCTTAACTACCAAAGCAATCAGCACCACCGCCACTGCCACCACCTCGACTGGAAATTGCAACAACGGTAGTAGTGTATTCGCCAGTGTATTCGCACCTTCCTCCGCTTCAGCGTTGATGACACAGCCACCCCAAGCATCGTCACCGTCCTCATTCACCAATCAAGTATCCACATTGGGCCGCCTGGATGGCTCTACCACAACCTCCGCCATTAATGAACCCACATCACTCTCACTCTCTACCTCCCTTTACCTCTCCAGCAGTGGCTTCTCACTCTTTCCAACACCCGATCAACAAGACCACCGCGACTACGCTCAGCCCGCTGCCATGTCCGCCACGGCATTGCTCCAAAAGGCAGCCGAAATGGGTGCTGCAGCATCAAACGCTTCACTGCTTCGTGGGTTCGGGTTGTCCACGACCTCATCCCCGTCTCAAGACAGTAGCACCACATTGCAGTGGAGCAAGAAGCCAGAAAGTGGTGGTGGTGCTCACGTGGGAGCCGAGTTAGGGCTTGAACTTCTCTCAACTGCAAATGTTGCCCAATTTACTGATCTAATGATGGGTCCACCTTCGTCGTTCGGGGGCCAGCCCATGACTCGTGACCTTCTTGGGCTGAGCATCGGTAGTGGTGGTGGCGGTGGCGCTTCCGCTGGGGGATTTTCTGCTTTCCTGAATTCCTTTGGCGGCAGCAGCGGTGCCTTCAACGTTTCAGCTCCATATGGAAGTGGAGGAGCAGGCGGTGGAAGCTCGCAGGGAGAATCGTGGGAAGGTGCACAAGATAGAAAGCCCAACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

536

Amino Acids

55.75

Weight (kDa)

8.81

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 106 - 140 1.6e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 144 - 168 3.2e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 171 - 209 1.2e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40030
malus_domestica MD08G1033100.v1.1 MD15G1029700.v1.1
prunus_persica Prupe.1G381800_v2.0.a1
pyrus_communis pycom08g02620 pycom12g10450 pycom15g02610
rosa_chinensis RchiOBHm_Chr6g0300721
rosa_laevigata RLG00000011308
rosa_multiflora Rmu_co8477681.1_g000001
rosa_roxburghii Rroxscaffold_7G00167480
rosa_rugosa Rorug06G0298700
rosa_samantha Rh6AG411300 Rh6BG418600 Rh6CG426000 Rh6DG411500
rosa_wichuraiana Rw6G036000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 258, 285
AccB1I GGYRCC 3 cut(s) 503, 796, 1505
AccB7I CCANNNNNTGG 1 cut(s) 1286
AccBSI CCGCTC 2 cut(s) 83, 445
AccI GTMKAC 1 cut(s) 327
AccII CGCG 4 cut(s) 87, 170, 602, 1116
AclI AACGTT 1 cut(s) 1515
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 1483
AcuI CTGAAG 2 cut(s) 311, 903
AcvI CACGTG 1 cut(s) 1303
AcyI GRCGYC 2 cut(s) 689, 797
AfaI GTAC 4 cut(s) 315, 515, 640, 679
AfiI CCNNNNNNNGG 4 cut(s) 265, 370, 1286, 1317
AgsI TTSAA 5 cut(s) 45, 654, 752, 1325, 1513
AjnI CCWGG 1 cut(s) 993
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AleI CACNNNNGTG 1 cut(s) 728
AluBI AGCT 7 cut(s) 10, 256, 289, 555, 756, 1523, 1557
AluI AGCT 7 cut(s) 10, 256, 289, 555, 756, 1523, 1557
Alw21I GWGCWC 4 cut(s) 357, 452, 1300, 1585
Alw26I GTCTC 3 cut(s) 335, 738, 1245
Alw44I GTGCAC 2 cut(s) 353, 1581
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 4 cut(s) 338, 369, 507, 646
AoxI GGCC 5 cut(s) 268, 738, 781, 988, 1393
ApaLI GTGCAC 2 cut(s) 353, 1581
ApeKI GCWGC 9 cut(s) 222, 253, 295, 1133, 1166, 1181, 1184, 1497, 1500
ApoI RAATTY 1 cut(s) 1483
AseI ATTAAT 1 cut(s) 1023
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 6 cut(s) 172, 376, 487, 602, 799, 1454
AspS9I GGNCC 6 cut(s) 241, 268, 627, 988, 1373, 1393
AsuC2I CCSGG 3 cut(s) 138, 370, 371
AsuHPI GGTGA 2 cut(s) 945, 958
AvaI CYCGRG 4 cut(s) 338, 369, 507, 646
AvaII GGWCC 3 cut(s) 241, 627, 1373
BaeGI GKGCMC 2 cut(s) 357, 1585
BanI GGYRCC 3 cut(s) 503, 796, 1505
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BauI CACGAG 1 cut(s) 1407
BbrPI CACGTG 1 cut(s) 1303
BbsI GAAGAC 2 cut(s) 500, 611
Bbv12I GWGCWC 4 cut(s) 357, 452, 1300, 1585
BbvI GCAGC 9 cut(s) 234, 265, 307, 1120, 1168, 1178, 1196, 1509, 1512
BccI CCATC 2 cut(s) 992, 1363
BceAI ACGGC 5 cut(s) 13, 63, 265, 436, 1164
BcgI CGANNNNNNTGC 6 cut(s) 169, 203, 392, 426, 1160, 1194
BciT130I CCWGG 1 cut(s) 995
BciVI GTATCC 1 cut(s) 988
BcnI CCSGG 3 cut(s) 138, 370, 371
BcoDI GTCTC 3 cut(s) 335, 738, 1245
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 3 cut(s) 220, 251, 1182
BfoI RGCGCY 3 cut(s) 377, 800, 1455
BfuAI ACCTGC 2 cut(s) 258, 285
BfuI GTATCC 1 cut(s) 988
BglI GCCNNNNNGGC 1 cut(s) 999
BglII AGATCT 1 cut(s) 216
BlpI GCTNAGC 2 cut(s) 1125, 1424
Bme1390I CCNGG 4 cut(s) 138, 370, 371, 995
Bme18I GGWCC 3 cut(s) 241, 627, 1373
BmeT110I CYCGRG 4 cut(s) 338, 369, 507, 646
BmgT120I GGNCC 6 cut(s) 241, 268, 627, 988, 1373, 1393
BmrFI CCNGG 4 cut(s) 138, 370, 371, 995
BmsI GCATC 4 cut(s) 509, 956, 1196, 1437
BpiI GAAGAC 2 cut(s) 500, 611
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 1051
Bpu1102I GCTNAGC 2 cut(s) 1125, 1424
BpuEI CTTGAG 1 cut(s) 1227
BpuMI CCSGG 3 cut(s) 138, 370, 371
BsaAI YACGTR 1 cut(s) 1303
BsaHI GRCGYC 2 cut(s) 689, 797
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 281, 369, 1146
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 370, 1286, 1317
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 3 cut(s) 66, 865, 894
Bse3DI GCAATG 2 cut(s) 1151, 1259
BseBI CCWGG 1 cut(s) 995
BseDI CCNNGG 3 cut(s) 281, 369, 1146
BseGI GGATG 3 cut(s) 166, 1003, 1232
BseLI CCNNNNNNNGG 4 cut(s) 265, 370, 1286, 1317
BseMI GCAATG 2 cut(s) 1151, 1259
BseMII CTCAG 3 cut(s) 771, 1139, 1415
BseNI ACTGG 3 cut(s) 66, 865, 894
BseRI GAGGAG 2 cut(s) 608, 1554
BseSI GKGCMC 2 cut(s) 357, 1585
BseXI GCAGC 9 cut(s) 234, 265, 307, 1120, 1168, 1178, 1196, 1509, 1512
BseYI CCCAGC 1 cut(s) 1460
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 4 cut(s) 87, 170, 602, 1116
BshFI GGCC 5 cut(s) 270, 740, 783, 990, 1395
BshNI GGYRCC 3 cut(s) 503, 796, 1505
BsiHKAI GWGCWC 4 cut(s) 357, 452, 1300, 1585
BsiHKCI CYCGRG 4 cut(s) 338, 369, 507, 646
BsiSI CCGG 6 cut(s) 54, 138, 262, 370, 737, 794
BslFI GGGAC 3 cut(s) 254, 544, 772
BslI CCNNNNNNNGG 4 cut(s) 265, 370, 1286, 1317
BsmAI GTCTC 3 cut(s) 335, 738, 1245
BsmBI CGTCTC 1 cut(s) 1245
BsmFI GGGAC 3 cut(s) 254, 544, 772
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 5 cut(s) 270, 740, 783, 990, 1395
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 4 cut(s) 338, 369, 507, 646
Bsp1286I GDGCHC 4 cut(s) 357, 452, 1300, 1585
Bsp143I GATC 5 cut(s) 148, 165, 216, 1099, 1360
Bsp1720I GCTNAGC 2 cut(s) 1125, 1424
Bsp68I TCGCGA 1 cut(s) 87
BspANI GGCC 5 cut(s) 270, 740, 783, 990, 1395
BspCNI CTCAG 3 cut(s) 770, 1138, 1416
BspFNI CGCG 4 cut(s) 87, 170, 602, 1116
BspMAI CTGCAG 3 cut(s) 224, 255, 1186
BspMI ACCTGC 2 cut(s) 258, 285
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 3 cut(s) 503, 796, 1505
BspTNI GGTCTC 1 cut(s) 335
BsrBI CCGCTC 2 cut(s) 83, 445
BsrDI GCAATG 2 cut(s) 1151, 1259
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 3 cut(s) 66, 865, 894
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 3 cut(s) 281, 369, 1146
BssMI GATC 5 cut(s) 148, 165, 216, 1099, 1360
BssNI GRCGYC 2 cut(s) 689, 797
BssSI CACGAG 1 cut(s) 1407
Bst2BI CACGAG 1 cut(s) 1407
Bst2UI CCWGG 1 cut(s) 995
Bst4CI ACNGT 8 cut(s) 40, 203, 682, 717, 727, 878, 957, 1250
Bst6I CTCTTC 1 cut(s) 668
BstACI GRCGYC 2 cut(s) 689, 797
BstAPI GCANNNNNTGC 1 cut(s) 1346
BstBAI YACGTR 1 cut(s) 1303
BstC8I GCNNGC 9 cut(s) 85, 192, 353, 443, 801, 1131, 1397, 1546, 1559
BstDEI CTNAG 3 cut(s) 757, 1125, 1424
BstDSI CCRYGG 2 cut(s) 281, 1146
BstF5I GGATG 3 cut(s) 166, 1003, 1232
BstFNI CGCG 4 cut(s) 87, 170, 602, 1116
BstH2I RGCGCY 3 cut(s) 377, 800, 1455
BstHHI GCGC 6 cut(s) 172, 376, 487, 602, 799, 1454
BstKTI GATC 5 cut(s) 151, 168, 219, 1102, 1363
BstMAI GTCTC 3 cut(s) 335, 738, 1245
BstMBI GATC 5 cut(s) 148, 165, 216, 1099, 1360
BstNI CCWGG 1 cut(s) 995
BstNSI RCATGY 1 cut(s) 813
BstSCI CCNGG 4 cut(s) 136, 368, 369, 993
BstSFI CTRYAG 3 cut(s) 220, 251, 1182
BstSLI GKGCMC 2 cut(s) 357, 1585
BstUI CGCG 4 cut(s) 87, 170, 602, 1116
BstV1I GCAGC 9 cut(s) 234, 265, 307, 1120, 1168, 1178, 1196, 1509, 1512
BstV2I GAAGAC 2 cut(s) 500, 611
BstX2I RGATCY 2 cut(s) 148, 216
BstYI RGATCY 2 cut(s) 148, 216
BsuI GTATCC 1 cut(s) 988
BsuRI GGCC 5 cut(s) 270, 740, 783, 990, 1395
BtgI CCRYGG 2 cut(s) 281, 1146
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 3 cut(s) 166, 1003, 1232
BtsI GCAGTG 5 cut(s) 471, 843, 1078, 1199, 1271
BtsIMutI CAGTG 6 cut(s) 471, 843, 901, 1078, 1199, 1271
BtuMI TCGCGA 1 cut(s) 87
BveI ACCTGC 2 cut(s) 258, 285
Cac8I GCNNGC 9 cut(s) 85, 192, 353, 443, 801, 1131, 1397, 1546, 1559
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 6 cut(s) 172, 376, 487, 602, 799, 1454
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 6 cut(s) 241, 268, 627, 988, 1373, 1393
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 2 cut(s) 590, 678
Csp6I GTAC 4 cut(s) 314, 514, 639, 678
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 5 cut(s) 94, 490, 810, 1138, 1402
CviQI GTAC 4 cut(s) 314, 514, 639, 678
DdeI CTNAG 3 cut(s) 757, 1125, 1424
DinI GGCGCC 1 cut(s) 798
DpnI GATC 5 cut(s) 150, 167, 218, 1101, 1362
DpnII GATC 5 cut(s) 148, 165, 216, 1099, 1360
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
EciI GGCGGA 3 cut(s) 605, 1006, 1132
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 3 cut(s) 241, 627, 1373
Eco57I CTGAAG 2 cut(s) 311, 903
Eco72I CACGTG 1 cut(s) 1303
Eco88I CYCGRG 4 cut(s) 338, 369, 507, 646
EcoRI GAATTC 1 cut(s) 1483
EcoRII CCWGG 1 cut(s) 993
EgeI GGCGCC 1 cut(s) 798
EheI GGCGCC 1 cut(s) 798
Esp3I CGTCTC 1 cut(s) 1245
FaeI CATG 5 cut(s) 97, 493, 813, 1141, 1405
FaiI YATR 8 cut(s) 95, 491, 560, 811, 1139, 1403, 1528, 1530
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 3 cut(s) 254, 544, 772
FatI CATG 5 cut(s) 93, 489, 809, 1137, 1401
FauI CCCGC 5 cut(s) 231, 258, 315, 521, 1138
FauNDI CATATG 1 cut(s) 1528
FblI GTMKAC 1 cut(s) 327
FokI GGATG 3 cut(s) 173, 1010, 1219
FspBI CTAG 1 cut(s) 543
GlaI GCGC 6 cut(s) 171, 375, 486, 601, 798, 1453
GsaI CCCAGC 1 cut(s) 1464
GsuI CTGGAG 1 cut(s) 1051
HaeII RGCGCY 3 cut(s) 377, 800, 1455
HaeIII GGCC 5 cut(s) 270, 740, 783, 990, 1395
HapII CCGG 6 cut(s) 54, 138, 262, 370, 737, 794
HgaI GACGC 2 cut(s) 590, 678
HhaI GCGC 6 cut(s) 172, 376, 487, 602, 799, 1454
Hin1I GRCGYC 2 cut(s) 689, 797
Hin1II CATG 5 cut(s) 97, 493, 813, 1141, 1405
Hin6I GCGC 6 cut(s) 170, 374, 485, 600, 797, 1452
HinP1I GCGC 6 cut(s) 170, 374, 485, 600, 797, 1452
HinfI GANTC 6 cut(s) 97, 184, 607, 661, 1405, 1568
HpaII CCGG 6 cut(s) 54, 138, 262, 370, 737, 794
HphI GGTGA 2 cut(s) 945, 958
Hpy166II GTNNAC 5 cut(s) 328, 355, 1224, 1376, 1583
Hpy188I TCNGA 6 cut(s) 106, 475, 631, 660, 666, 760
Hpy188III TCNNGA 5 cut(s) 86, 152, 1244, 1409, 1480
Hpy8I GTNNAC 5 cut(s) 328, 355, 1224, 1376, 1583
Hpy99I CGWCG 6 cut(s) 40, 184, 584, 635, 694, 1387
HpyAV CCTTC 7 cut(s) 143, 475, 918, 1389, 1424, 1519, 1571
HpyCH4III ACNGT 8 cut(s) 40, 203, 682, 717, 727, 878, 957, 1250
HpyCH4IV ACGT 3 cut(s) 330, 1302, 1515
HpyF3I CTNAG 3 cut(s) 757, 1125, 1424
HpySE526I ACGT 3 cut(s) 330, 1302, 1515
Hsp92I GRCGYC 2 cut(s) 689, 797
Hsp92II CATG 5 cut(s) 97, 493, 813, 1141, 1405
HspAI GCGC 6 cut(s) 170, 374, 485, 600, 797, 1452
KasI GGCGCC 1 cut(s) 796
Kzo9I GATC 5 cut(s) 148, 165, 216, 1099, 1360
LmnI GCTCC 9 cut(s) 7, 106, 261, 455, 1161, 1269, 1307, 1528, 1541
Lsp1109I GCAGC 9 cut(s) 234, 265, 307, 1120, 1168, 1178, 1196, 1509, 1512
LweI GCATC 4 cut(s) 509, 956, 1196, 1437
MaeI CTAG 1 cut(s) 543
MaeII ACGT 3 cut(s) 330, 1302, 1515
MaeIII GTNAC 3 cut(s) 30, 951, 1409
MalI GATC 5 cut(s) 150, 167, 218, 1101, 1362
MbiI CCGCTC 2 cut(s) 83, 445
MboI GATC 5 cut(s) 148, 165, 216, 1099, 1360
MboII GAAGA 4 cut(s) 439, 505, 616, 685
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 2 cut(s) 148, 216
MhlI GDGCHC 4 cut(s) 357, 452, 1300, 1585
MluCI AATT 6 cut(s) 16, 761, 777, 865, 1352, 1483
Mly113I GGCGCC 1 cut(s) 797
MlyI GAGTC 5 cut(s) 91, 178, 601, 655, 1399
MmeI TCCRAC 3 cut(s) 654, 683, 1115
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 4 cut(s) 71, 396, 815, 1023
MslI CAYNNNNRTG 2 cut(s) 728, 1264
MspA1I CMGCKG 5 cut(s) 238, 298, 1133, 1460, 1503
MspI CCGG 6 cut(s) 54, 138, 262, 370, 737, 794
MspR9I CCNGG 4 cut(s) 138, 370, 371, 995
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 995
MvnI CGCG 4 cut(s) 87, 170, 602, 1116
NarI GGCGCC 1 cut(s) 797
NciI CCSGG 3 cut(s) 138, 370, 371
NdeI CATATG 1 cut(s) 1528
NdeII GATC 5 cut(s) 148, 165, 216, 1099, 1360
NlaIII CATG 5 cut(s) 97, 493, 813, 1141, 1405
NmeAIII GCCGAG 1 cut(s) 1336
NmuCI GTSAC 2 cut(s) 951, 1409
NruI TCGCGA 1 cut(s) 87
NspI RCATGY 1 cut(s) 813
OliI CACNNNNGTG 1 cut(s) 728
PcsI WCGNNNNNNNCGW 5 cut(s) 32, 336, 569, 686, 1308
PctI GAATGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 1568
PflMI CCANNNNNTGG 1 cut(s) 1286
PfoI TCCNGGA 1 cut(s) 136
PleI GAGTC 5 cut(s) 91, 178, 601, 655, 1399
PluTI GGCGCC 1 cut(s) 800
PmaCI CACGTG 1 cut(s) 1303
PmlI CACGTG 1 cut(s) 1303
PpsI GAGTC 5 cut(s) 91, 178, 601, 655, 1399
Ppu21I YACGTR 1 cut(s) 1303
PshBI ATTAAT 1 cut(s) 1023
Psp1406I AACGTT 1 cut(s) 1515
Psp6I CCWGG 1 cut(s) 993
PspCI CACGTG 1 cut(s) 1303
PspFI CCCAGC 1 cut(s) 1460
PspGI CCWGG 1 cut(s) 993
PspPI GGNCC 6 cut(s) 241, 268, 627, 988, 1373, 1393
PstI CTGCAG 3 cut(s) 224, 255, 1186
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 148, 216
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 4 cut(s) 315, 515, 640, 679
RsaNI GTAC 4 cut(s) 314, 514, 639, 678
RseI CAYNNNNRTG 2 cut(s) 728, 1264
SaqAI TTAA 4 cut(s) 71, 396, 815, 1023
Sau3AI GATC 5 cut(s) 148, 165, 216, 1099, 1360
Sau96I GGNCC 6 cut(s) 241, 268, 627, 988, 1373, 1393
SchI GAGTC 5 cut(s) 91, 178, 601, 655, 1399
ScrFI CCNGG 4 cut(s) 138, 370, 371, 995
SduI GDGCHC 4 cut(s) 357, 452, 1300, 1585
SfaNI GCATC 4 cut(s) 509, 956, 1196, 1437
SfcI CTRYAG 3 cut(s) 220, 251, 1182
SfoI GGCGCC 1 cut(s) 798
SgrAI CRCCGGYG 1 cut(s) 261
SinI GGWCC 3 cut(s) 241, 627, 1373
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 728, 1264
SmlI CTYRAG 1 cut(s) 1242
SmoI CTYRAG 1 cut(s) 1242
Sse9I AATT 6 cut(s) 16, 761, 777, 865, 1352, 1483
SspDI GGCGCC 1 cut(s) 796
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 136, 368, 369, 993
TaaI ACNGT 8 cut(s) 40, 203, 682, 717, 727, 878, 957, 1250
TaiI ACGT 3 cut(s) 333, 1305, 1518
TaqI TCGA 2 cut(s) 412, 857
TasI AATT 6 cut(s) 16, 761, 777, 865, 1352, 1483
TatI WGTACW 1 cut(s) 513
TauI GCSGC 6 cut(s) 60, 112, 115, 697, 993, 1497
TfiI GAWTC 1 cut(s) 1568
Tru1I TTAA 4 cut(s) 71, 396, 815, 1023
Tru9I TTAA 4 cut(s) 71, 396, 815, 1023
TscAI CASTG 6 cut(s) 471, 850, 901, 1078, 1206, 1271
TseFI GTSAC 2 cut(s) 951, 1409
TseI GCWGC 9 cut(s) 222, 253, 295, 1133, 1166, 1181, 1184, 1497, 1500
Tsp45I GTSAC 2 cut(s) 951, 1409
TspDTI ATGAA 3 cut(s) 506, 547, 1041
TspGWI ACGGA 2 cut(s) 331, 648
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 6 cut(s) 471, 850, 901, 1078, 1206, 1271
Van91I CCANNNNNTGG 1 cut(s) 1286
VneI GTGCAC 2 cut(s) 353, 1581
VpaK11BI GGWCC 3 cut(s) 241, 627, 1373
VspI ATTAAT 1 cut(s) 1023
XapI RAATTY 1 cut(s) 1483
XceI RCATGY 1 cut(s) 813
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.