pycom15g02610

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013791
Physical Location & Seq
Reverse (-)
1604251 .. 1605243
993 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02610.3

Sequence Viewer

Length: 774 bp
ATGGGGGAGCTGGATAATTCCTCATCGCCGTTACTGACGGTTTCAACGGCTACCGGCGGCGAAGCCAGTTTAACGTCCTCCGCTCACGAAGCCATGACTCATCCGGAGCCGCCGCAAAAGAAAAAGCGAAACCTTCCCGGAATGCCAGATCCCGAAGCGGAGGTGATCGCGCTGTCGCCGACGACTCTTCTCGCAACGAACCGTTTCGTGTGTGAGATCTGCAATAAAGGCTTCCAGCGCGACCAGAACCTGCAGCTCCACCGGCGGGGCCACAACCTGCCGTGGAAGCTGAAGCAACGGACGAGCAAAGAAGTACGGAAGCGGGTCTACGTCTGCCCCGAGACCTCCTGCGTTCACCACCACCCCACACGGGCGCTCGGAGACCTGACGGGTATCAAGAAGCACTTTTGTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCCGTGCAGTCCGATTGGAAGGCGCACATGAAGACTTGCGGCACCCGAGAGTACAAATGCGATTGCGGAACTTTATTCTCTAGGAGGGATAGCTTCATAACGCACAGGGCGTTCTGCGACGCGTTGGCGGAGGAGAGCGCGAAGACTCAAACCCTAGTGATTGGGCCCGACGGAAGTATGAACCCGAATTCAAATCCAACTCCGAGTGCGAAGAGTGGGGTGGTGGCATCGCCGCCTCCACCGCCTCACACACCGTCGAACACCGTGGTGTCTCCGGCCTTGTCTATTCAGAGCTCAGGTAACCCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

258

Amino Acids

28.26

Weight (kDa)

9.35

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40030
malus_domestica MD08G1033100.v1.1 MD15G1029700.v1.1
prunus_persica Prupe.1G381800_v2.0.a1
pyrus_communis pycom08g02620 pycom12g10450 pycom15g02610
rosa_chinensis RchiOBHm_Chr6g0300721
rosa_laevigata RLG00000011308
rosa_multiflora Rmu_co8477681.1_g000001
rosa_roxburghii Rroxscaffold_7G00167480
rosa_rugosa Rorug06G0298700
rosa_samantha Rh6AG411300 Rh6BG418600 Rh6CG426000 Rh6DG411500
rosa_wichuraiana Rw6G036000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 258, 285
AccB1I GGYRCC 1 cut(s) 503
AccBSI CCGCTC 2 cut(s) 83, 445
AccI GTMKAC 1 cut(s) 327
AccII CGCG 4 cut(s) 170, 240, 584, 602
AccIII TCCGGA 1 cut(s) 103
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 2 cut(s) 315, 515
AfiI CCNNNNNNNGG 2 cut(s) 265, 370
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 2 cut(s) 45, 654
AleI CACNNNNGTG 1 cut(s) 728
AluBI AGCT 5 cut(s) 10, 256, 289, 555, 756
AluI AGCT 5 cut(s) 10, 256, 289, 555, 756
Alw21I GWGCWC 2 cut(s) 452, 758
Alw26I GTCTC 3 cut(s) 335, 375, 738
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 2 cut(s) 338, 507
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 3 cut(s) 268, 626, 738
ApaI GGGCCC 1 cut(s) 630
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 649
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 5 cut(s) 172, 240, 376, 487, 602
AspS9I GGNCC 3 cut(s) 268, 626, 627
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 175, 347
AvaI CYCGRG 2 cut(s) 338, 507
BaeGI GKGCMC 1 cut(s) 630
BanI GGYRCC 1 cut(s) 503
BanII GRGCYC 2 cut(s) 630, 758
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BbsI GAAGAC 2 cut(s) 500, 611
Bbv12I GWGCWC 2 cut(s) 452, 758
BbvI GCAGC 1 cut(s) 265
BceAI ACGGC 5 cut(s) 13, 63, 265, 436, 449
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 335, 375, 738
BfaI CTAG 2 cut(s) 543, 617
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 377
BfuAI ACCTGC 2 cut(s) 258, 285
BglII AGATCT 1 cut(s) 216
BisI GCNGC 6 cut(s) 58, 110, 113, 254, 502, 695
BlsI GCNGC 6 cut(s) 59, 111, 114, 255, 503, 696
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 2 cut(s) 338, 507
BmgT120I GGNCC 3 cut(s) 268, 626, 627
BmiI GGNNCC 4 cut(s) 108, 269, 505, 628
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 698
BpiI GAAGAC 2 cut(s) 500, 611
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bpu10I CCTNAGC 1 cut(s) 757
BpuMI CCSGG 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 335, 375
BsaJI CCNNGG 2 cut(s) 281, 726
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 370
Bse118I RCCGGY 2 cut(s) 53, 261
Bse1I ACTGG 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 281, 726
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 265, 370
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 4 cut(s) 170, 240, 584, 602
BshFI GGCC 3 cut(s) 270, 628, 740
BshNI GGYRCC 1 cut(s) 503
BsiHKAI GWGCWC 2 cut(s) 452, 758
BsiHKCI CYCGRG 2 cut(s) 338, 507
BsiSI CCGG 5 cut(s) 54, 104, 138, 262, 737
BslI CCNNNNNNNGG 2 cut(s) 265, 370
BsmAI GTCTC 3 cut(s) 335, 375, 738
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 3 cut(s) 270, 628, 740
Bso31I GGTCTC 2 cut(s) 335, 375
BsoBI CYCGRG 2 cut(s) 338, 507
Bsp120I GGGCCC 1 cut(s) 626
Bsp1286I GDGCHC 3 cut(s) 452, 630, 758
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 148, 165, 216
BspANI GGCC 3 cut(s) 270, 628, 740
BspCNI CTCAG 1 cut(s) 770
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 4 cut(s) 170, 240, 584, 602
BspLI GGNNCC 4 cut(s) 108, 269, 505, 628
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 2 cut(s) 258, 285
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 503
BspTNI GGTCTC 2 cut(s) 335, 375
BsrBI CCGCTC 2 cut(s) 83, 445
BsrFI RCCGGY 2 cut(s) 53, 261
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 2 cut(s) 53, 261
BssECI CCNNGG 2 cut(s) 281, 726
BssMI GATC 3 cut(s) 148, 165, 216
Bst4CI ACNGT 4 cut(s) 40, 203, 717, 727
Bst6I CTCTTC 2 cut(s) 192, 668
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 1 cut(s) 757
BstDSI CCRYGG 2 cut(s) 281, 726
BstEII GGTNACC 1 cut(s) 761
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 4 cut(s) 170, 240, 584, 602
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 5 cut(s) 172, 240, 376, 487, 602
BstKTI GATC 3 cut(s) 151, 168, 219
BstMAI GTCTC 3 cut(s) 335, 375, 738
BstMBI GATC 3 cut(s) 148, 165, 216
BstMWI GCNNNNNNNGC 7 cut(s) 89, 228, 237, 262, 286, 447, 703
BstPI GGTNACC 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 630
BstUI CGCG 4 cut(s) 170, 240, 584, 602
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 2 cut(s) 500, 611
BstX2I RGATCY 2 cut(s) 148, 216
BstYI RGATCY 2 cut(s) 148, 216
BsuRI GGCC 3 cut(s) 270, 628, 740
BtgI CCRYGG 2 cut(s) 281, 726
BtgZI GCGATG 2 cut(s) 9, 675
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 2 cut(s) 258, 285
Cac8I GCNNGC 1 cut(s) 443
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 5 cut(s) 172, 240, 376, 487, 602
Cfr10I RCCGGY 2 cut(s) 53, 261
Cfr13I GGNCC 3 cut(s) 268, 626, 627
CseI GACGC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 314, 514
CviAII CATG 2 cut(s) 94, 490
CviQI GTAC 2 cut(s) 314, 514
DdeI CTNAG 1 cut(s) 757
DpnI GATC 3 cut(s) 150, 167, 218
DpnII GATC 3 cut(s) 148, 165, 216
Eam1104I CTCTTC 2 cut(s) 192, 668
EarI CTCTTC 2 cut(s) 192, 668
EciI GGCGGA 1 cut(s) 605
Ecl136II GAGCTC 1 cut(s) 756
Eco24I GRGCYC 2 cut(s) 630, 758
Eco31I GGTCTC 2 cut(s) 335, 375
Eco53kI GAGCTC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 311
Eco88I CYCGRG 2 cut(s) 338, 507
Eco91I GGTNACC 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 756
EcoO65I GGTNACC 1 cut(s) 761
EcoRI GAATTC 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 630, 758
FaeI CATG 2 cut(s) 97, 493
FaiI YATR 4 cut(s) 95, 491, 560, 641
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 2 cut(s) 93, 489
FauI CCCGC 2 cut(s) 258, 315
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 6 cut(s) 58, 110, 113, 254, 502, 695
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 2 cut(s) 630, 758
Fsp4HI GCNGC 6 cut(s) 58, 110, 113, 254, 502, 695
FspBI CTAG 2 cut(s) 543, 617
GlaI GCGC 5 cut(s) 171, 239, 375, 486, 601
GluI GCNGC 6 cut(s) 58, 110, 113, 254, 502, 695
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 3 cut(s) 270, 628, 740
HapII CCGG 5 cut(s) 54, 104, 138, 262, 737
HgaI GACGC 1 cut(s) 590
HhaI GCGC 5 cut(s) 172, 240, 376, 487, 602
Hin1II CATG 2 cut(s) 97, 493
Hin6I GCGC 5 cut(s) 170, 238, 374, 485, 600
HinP1I GCGC 5 cut(s) 170, 238, 374, 485, 600
HinfI GANTC 3 cut(s) 97, 184, 607
HpaII CCGG 5 cut(s) 54, 104, 138, 262, 737
HphI GGTGA 2 cut(s) 175, 347
Hpy166II GTNNAC 2 cut(s) 328, 355
Hpy188I TCNGA 4 cut(s) 380, 475, 666, 753
Hpy188III TCNNGA 4 cut(s) 86, 104, 152, 397
Hpy8I GTNNAC 2 cut(s) 328, 355
Hpy99I CGWCG 4 cut(s) 184, 584, 635, 721
HpyAV CCTTC 2 cut(s) 143, 475
HpyCH4III ACNGT 4 cut(s) 40, 203, 717, 727
HpyCH4IV ACGT 2 cut(s) 74, 330
HpyCH4V TGCA 3 cut(s) 222, 253, 469
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 228, 237, 262, 286, 447, 703
HpyF3I CTNAG 1 cut(s) 757
HpySE526I ACGT 2 cut(s) 74, 330
Hsp92II CATG 2 cut(s) 97, 493
HspAI GCGC 5 cut(s) 170, 238, 374, 485, 600
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 148, 165, 216
LmnI GCTCC 4 cut(s) 7, 106, 261, 455
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 698
MaeI CTAG 2 cut(s) 543, 617
MaeII ACGT 2 cut(s) 74, 330
MaeIII GTNAC 2 cut(s) 30, 761
MalI GATC 3 cut(s) 150, 167, 218
MbiI CCGCTC 2 cut(s) 83, 445
MboI GATC 3 cut(s) 148, 165, 216
MboII GAAGA 5 cut(s) 179, 439, 505, 616, 685
MflI RGATCY 2 cut(s) 148, 216
MhlI GDGCHC 3 cut(s) 452, 630, 758
MluCI AATT 2 cut(s) 16, 649
MluI ACGCGT 1 cut(s) 582
MlyI GAGTC 3 cut(s) 91, 178, 601
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 8 cut(s) 31, 88, 154, 355, 540, 586, 708, 717
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 71, 772
MslI CAYNNNNRTG 1 cut(s) 728
MspI CCGG 5 cut(s) 54, 104, 138, 262, 737
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 4 cut(s) 170, 240, 584, 602
MwoI GCNNNNNNNGC 7 cut(s) 89, 228, 237, 262, 286, 447, 703
NciI CCSGG 1 cut(s) 138
NdeII GATC 3 cut(s) 148, 165, 216
NlaIII CATG 2 cut(s) 97, 493
NlaIV GGNNCC 4 cut(s) 108, 269, 505, 628
OliI CACNNNNGTG 1 cut(s) 728
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 569
PctI GAATGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 6 cut(s) 59, 111, 114, 255, 503, 696
PleI GAGTC 3 cut(s) 91, 178, 601
PpsI GAGTC 3 cut(s) 91, 178, 601
Psp124BI GAGCTC 1 cut(s) 758
PspEI GGTNACC 1 cut(s) 761
PspN4I GGNNCC 4 cut(s) 108, 269, 505, 628
PspOMI GGGCCC 1 cut(s) 626
PspPI GGNCC 3 cut(s) 268, 626, 627
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 148, 216
RsaI GTAC 2 cut(s) 315, 515
RsaNI GTAC 2 cut(s) 314, 514
RseI CAYNNNNRTG 1 cut(s) 728
SacI GAGCTC 1 cut(s) 758
SaqAI TTAA 2 cut(s) 71, 772
SatI GCNGC 6 cut(s) 58, 110, 113, 254, 502, 695
Sau3AI GATC 3 cut(s) 148, 165, 216
Sau96I GGNCC 3 cut(s) 268, 626, 627
SchI GAGTC 3 cut(s) 91, 178, 601
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 3 cut(s) 452, 630, 758
SfaNI GCATC 1 cut(s) 698
SfcI CTRYAG 1 cut(s) 251
SgrAI CRCCGGYG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 728
Sse9I AATT 2 cut(s) 16, 649
SspMI CTAG 2 cut(s) 543, 617
SstI GAGCTC 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 4 cut(s) 40, 203, 717, 727
TaiI ACGT 2 cut(s) 77, 333
TaqI TCGA 2 cut(s) 412, 719
TasI AATT 2 cut(s) 16, 649
TatI WGTACW 1 cut(s) 513
TauI GCSGC 5 cut(s) 60, 112, 115, 504, 697
Tru1I TTAA 2 cut(s) 71, 772
Tru9I TTAA 2 cut(s) 71, 772
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 506, 547, 656
TspGWI ACGGA 3 cut(s) 313, 331, 648
XapI RAATTY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 543, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.