RchiOBHm_Chr6g0300721

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
61461614 .. 61465654
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27007

Sequence Viewer

Length: 1371 bp
ATGGGCGACCTTGACCTTGACAATTCTTCCTCACTAGTTGGTTCTACCGCTTCAGGAGAAGCTACTTTTTCGGAGCCGCCTGCCAAGAAGAAGCGAAATCTTCCCGGAATGCCAGATCCTGAAGCGGAGGTGATCGCTCTGTCGCCGAAAACTCTGATGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGGTTCCAGCGCGACCAAAACCTCCAGCTCCACCGCAGAGGCCACAACCTGCCGTGGAAGCTGAGGCAGCGAACCACGACGGAGGTTCGGAAGCGGGTTTACGTCTGCCCCGAGACGTCGTGCGTGCACCACAACCCGACCCGAGCGCTGGGCGATCTCACCGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCGGTGCAATCTGATTGGAAGGCGCACATGAAGACCTGCGGCACTAGAGAGTACAAATGTGATTGTGGAACTTTGTTCTCTAGGAGGGATAGCTTCATAACGCATAGGGCTTTCTGTGACGCCTTGGCCGAGGAGAGTGCTAAGGCTCAAACCCTAGGAAGCTCGCAGCTGGCAAATCCGAACCCGAGCCCGAATGCTGGAAAGGCGGTTGTGGTGGCATCGCCACCTCCACCGCCTCTCACACCTTCCAATAATGTGGTGTCTCCAGCTCTATCCATTCAAAGCTCAGAATTCCCAGAAAACCCAGTAGGACTGTCGCCACCACCTCCAGCAACCACGTGCTTAACGAGTACCACGACGGCGATTAGCACCACGGCCACCACCACCACCTCAACTGGAAATTGCAGCAACACTAGTACTAGTGTATTTGCTAGCATATTTGCTCCTAGTACTGCCTCACAAACATCAGCAGCCGCTAATTCCTCATACTCCAATATAGTCTCCAGTTCTGCAATCCCATCAGCCTCCGCTATGGAACCAACGTCTCTCTCACTCTCCACCTCTCTATACCTATCCAACAATGGCTCCACCCTCTTCCCAACTGCTGATCAGCAAGACCATCGCCAGTATGTAGCTTCTCCTCAGGCTCCAGCCATGTCCGCCACGGCATTGCTCCAAAAAGCAGCCCAAATGGGTGCAGCTGCGACTAGTGGGTCTTTTCTTCGTGGCTTTGGCTTGGCCACGTCCTCATCGCCGCCCCAGGCGCAAGATAGCACCACCTCTTTGCAGTGGAGCAACAACAGCCACAGCCATCAGCACAAGAGAGATGGTAGCGGCGGTGCTGCTGCCACAGTAGCAGCTGGGCTTGGAGCAAGTTCTGCCCTATTGACTGATCTCATGATGGGCCCACCTGTGCCGTTTGGGGTCATCATCAGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

48.02

Weight (kDa)

9.07

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 95 - 129 1.3e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 133 - 157 2.6e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 160 - 197 1.5e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013791)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1141
AatII GACGTC 1 cut(s) 314
Acc36I ACCTGC 2 cut(s) 252, 473
AccBSI CCGCTC 1 cut(s) 412
AccII CGCG 2 cut(s) 207, 431
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 3 cut(s) 555, 804, 1167
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 2 cut(s) 36, 141
AcvI CACGTG 1 cut(s) 768
AcyI GRCGYC 2 cut(s) 311, 549
AfaI GTAC 5 cut(s) 428, 482, 781, 847, 880
AfeI AGCGCT 1 cut(s) 342
AfiI CCNNNNNNNGG 2 cut(s) 343, 626
AgsI TTSAA 1 cut(s) 710
AhlI ACTAGT 4 cut(s) 34, 842, 848, 1136
AjiI CACGTC 1 cut(s) 1173
AjnI CCWGG 1 cut(s) 1188
Alw21I GWGCWC 2 cut(s) 324, 419
Alw26I GTCTC 4 cut(s) 302, 696, 934, 978
Alw44I GTGCAC 1 cut(s) 320
AlwI GGATC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 3 cut(s) 305, 336, 613
Aor51HI AGCGCT 1 cut(s) 342
AoxI GGCC 5 cut(s) 235, 555, 804, 1167, 1333
ApaI GGGCCC 1 cut(s) 1337
ApaLI GTGCAC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 719
Asp700I GAANNNNTTC 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 583
AspLEI GCGC 4 cut(s) 207, 343, 454, 1195
AspS9I GGNCC 2 cut(s) 1333, 1334
AsuC2I CCSGG 2 cut(s) 105, 358
AsuHPI GGTGA 2 cut(s) 142, 346
AsuNHI GCTAGC 1 cut(s) 860
AvaI CYCGRG 3 cut(s) 305, 336, 613
AvrII CCTAGG 1 cut(s) 583
AxyI CCTNAGG 1 cut(s) 1071
BaeGI GKGCMC 2 cut(s) 324, 1337
BalI TGGCCA 1 cut(s) 1169
BanII GRGCYC 2 cut(s) 620, 1337
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbrPI CACGTG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 324, 419
BbvCI CCTCAGC 1 cut(s) 257
BccI CCATC 6 cut(s) 151, 955, 1056, 1248, 1250, 1324
BceAI ACGGC 6 cut(s) 232, 403, 804, 819, 1110, 1330
BcgI CGANNNNNNTGC 4 cut(s) 548, 582, 1031, 1065
BciT130I CCWGG 1 cut(s) 1190
BclI TGATCA 1 cut(s) 1036
BcnI CCSGG 2 cut(s) 105, 358
BcoDI GTCTC 4 cut(s) 302, 696, 934, 978
BcuI ACTAGT 4 cut(s) 34, 842, 848, 1136
BfaI CTAG 9 cut(s) 35, 474, 510, 584, 843, 849, 861, 876, 1137
BfoI RGCGCY 1 cut(s) 344
BfuAI ACCTGC 2 cut(s) 252, 473
BglII AGATCT 1 cut(s) 183
BlnI CCTAGG 1 cut(s) 583
BmcAI AGTACT 2 cut(s) 847, 880
Bme1390I CCNGG 3 cut(s) 105, 358, 1190
BmeT110I CYCGRG 3 cut(s) 305, 336, 613
BmgBI CACGTC 1 cut(s) 1173
BmgT120I GGNCC 2 cut(s) 1333, 1334
BmiI GGNNCC 6 cut(s) 75, 200, 966, 1015, 1077, 1335
BmrFI CCNGG 3 cut(s) 105, 358, 1190
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 1 cut(s) 656
BmtI GCTAGC 1 cut(s) 864
BmuI ACTGGG 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 5 cut(s) 203, 678, 741, 916, 1062
Bpu10I CCTNAGC 2 cut(s) 257, 570
BpuMI CCSGG 2 cut(s) 105, 358
BsaAI YACGTR 1 cut(s) 768
BsaHI GRCGYC 2 cut(s) 311, 549
BsaJI CCNNGG 7 cut(s) 248, 552, 558, 583, 801, 1092, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 998, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 626
Bse1I ACTGG 4 cut(s) 734, 829, 933, 1054
Bse21I CCTNAGG 1 cut(s) 1071
Bse3DI GCAATG 1 cut(s) 1097
BseBI CCWGG 1 cut(s) 1190
BseDI CCNNGG 7 cut(s) 248, 552, 558, 583, 801, 1092, 1188
BseLI CCNNNNNNNGG 2 cut(s) 343, 626
BseMI GCAATG 1 cut(s) 1097
BseMII CTCAG 3 cut(s) 248, 729, 1085
BseNI ACTGG 4 cut(s) 734, 829, 933, 1054
BseRI GAGGAG 2 cut(s) 575, 1059
BseSI GKGCMC 2 cut(s) 324, 1337
BseYI CCCAGC 2 cut(s) 343, 1289
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 2 cut(s) 207, 431
BshFI GGCC 5 cut(s) 237, 557, 806, 1169, 1335
BsiHKAI GWGCWC 2 cut(s) 324, 419
BsiHKCI CYCGRG 3 cut(s) 305, 336, 613
BsiSI CCGG 2 cut(s) 105, 357
BslI CCNNNNNNNGG 2 cut(s) 343, 626
BsmAI GTCTC 4 cut(s) 302, 696, 934, 978
BsmBI CGTCTC 2 cut(s) 302, 978
BsmI GAATGC 2 cut(s) 114, 628
BsnI GGCC 5 cut(s) 237, 557, 806, 1169, 1335
BsoBI CYCGRG 3 cut(s) 305, 336, 613
Bsp120I GGGCCC 1 cut(s) 1333
Bsp1286I GDGCHC 4 cut(s) 324, 419, 620, 1337
Bsp143I GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
BspANI GGCC 5 cut(s) 237, 557, 806, 1169, 1335
BspCNI CTCAG 3 cut(s) 249, 728, 1084
BspFNI CGCG 2 cut(s) 207, 431
BspHI TCATGA 1 cut(s) 1326
BspLI GGNNCC 6 cut(s) 75, 200, 966, 1015, 1077, 1335
BspMI ACCTGC 2 cut(s) 252, 473
BspOI GCTAGC 1 cut(s) 864
BspPI GGATC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 1097
BsrI ACTGG 4 cut(s) 734, 829, 933, 1054
BssECI CCNNGG 7 cut(s) 248, 552, 558, 583, 801, 1092, 1188
BssMI GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
BssNI GRCGYC 2 cut(s) 311, 549
BssT1I CCWWGG 2 cut(s) 552, 583
Bst2UI CCWGG 1 cut(s) 1190
Bst4CI ACNGT 3 cut(s) 170, 744, 1282
Bst6I CTCTTC 1 cut(s) 1028
BstACI GRCGYC 2 cut(s) 311, 549
BstAPI GCANNNNNTGC 1 cut(s) 1307
BstBAI YACGTR 1 cut(s) 768
BstC8I GCNNGC 6 cut(s) 81, 320, 410, 593, 600, 862
BstDEI CTNAG 4 cut(s) 257, 570, 715, 1071
BstDSI CCRYGG 3 cut(s) 248, 801, 1092
BstFNI CGCG 2 cut(s) 207, 431
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 4 cut(s) 207, 343, 454, 1195
BstKTI GATC 6 cut(s) 118, 135, 186, 352, 1039, 1324
BstMAI GTCTC 4 cut(s) 302, 696, 934, 978
BstMBI GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
BstNI CCWGG 1 cut(s) 1190
BstSCI CCNGG 3 cut(s) 103, 356, 1188
BstSLI GKGCMC 2 cut(s) 324, 1337
BstUI CGCG 2 cut(s) 207, 431
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 115, 183
BstXI CCANNNNNNTGG 1 cut(s) 685
BstYI RGATCY 2 cut(s) 115, 183
Bsu36I CCTNAGG 1 cut(s) 1071
BsuRI GGCC 5 cut(s) 237, 557, 806, 1169, 1335
BtgI CCRYGG 3 cut(s) 248, 801, 1092
BtgZI GCGATG 3 cut(s) 633, 1034, 1164
BtrI CACGTC 1 cut(s) 1173
BtsI GCAGTG 1 cut(s) 1223
BtsIMutI CAGTG 1 cut(s) 1223
BveI ACCTGC 2 cut(s) 252, 473
Cac8I GCNNGC 6 cut(s) 81, 320, 410, 593, 600, 862
CaiI CAGNNNCTG 1 cut(s) 119
CciI TCATGA 1 cut(s) 1326
CfoI GCGC 4 cut(s) 207, 343, 454, 1195
Cfr13I GGNCC 2 cut(s) 1333, 1334
CseI GACGC 1 cut(s) 557
Csp6I GTAC 5 cut(s) 427, 481, 780, 846, 879
CviAII CATG 4 cut(s) 457, 1084, 1327, 1368
CviQI GTAC 5 cut(s) 427, 481, 780, 846, 879
DdeI CTNAG 4 cut(s) 257, 570, 715, 1071
DpnI GATC 6 cut(s) 117, 134, 185, 351, 1038, 1323
DpnII GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
DrdI GACNNNNNNGTC 1 cut(s) 1141
DseDI GACNNNNNNGTC 1 cut(s) 1141
EaeI YGGCCR 3 cut(s) 555, 804, 1167
Eam1104I CTCTTC 1 cut(s) 1028
EarI CTCTTC 1 cut(s) 1028
EciI GGCGGA 1 cut(s) 1078
Eco130I CCWWGG 2 cut(s) 552, 583
Eco24I GRGCYC 2 cut(s) 620, 1337
Eco47III AGCGCT 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 36, 141
Eco72I CACGTG 1 cut(s) 768
Eco81I CCTNAGG 1 cut(s) 1071
Eco88I CYCGRG 3 cut(s) 305, 336, 613
EcoRI GAATTC 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 1188
EcoT14I CCWWGG 2 cut(s) 552, 583
EcoT38I GRGCYC 2 cut(s) 620, 1337
ErhI CCWWGG 2 cut(s) 552, 583
Esp3I CGTCTC 2 cut(s) 302, 978
FaeI CATG 4 cut(s) 460, 1087, 1330, 1371
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 4 cut(s) 456, 1083, 1326, 1367
FauI CCCGC 1 cut(s) 282
FbaI TGATCA 1 cut(s) 1036
FriOI GRGCYC 2 cut(s) 620, 1337
FspBI CTAG 9 cut(s) 35, 474, 510, 584, 843, 849, 861, 876, 1137
GlaI GCGC 4 cut(s) 206, 342, 453, 1194
GsaI CCCAGC 2 cut(s) 347, 1293
GsuI CTGGAG 5 cut(s) 203, 678, 741, 916, 1062
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 5 cut(s) 237, 557, 806, 1169, 1335
HapII CCGG 2 cut(s) 105, 357
HgaI GACGC 1 cut(s) 557
HhaI GCGC 4 cut(s) 207, 343, 454, 1195
Hin1I GRCGYC 2 cut(s) 311, 549
Hin1II CATG 4 cut(s) 460, 1087, 1330, 1371
Hin6I GCGC 4 cut(s) 205, 341, 452, 1193
HinP1I GCGC 4 cut(s) 205, 341, 452, 1193
HpaII CCGG 2 cut(s) 105, 357
HphI GGTGA 2 cut(s) 142, 346
Hpy166II GTNNAC 2 cut(s) 295, 322
Hpy188I TCNGA 6 cut(s) 73, 156, 285, 442, 609, 718
Hpy188III TCNNGA 3 cut(s) 54, 119, 1327
Hpy8I GTNNAC 2 cut(s) 295, 322
Hpy99I CGWCG 4 cut(s) 166, 277, 316, 790
HpyAV CCTTC 2 cut(s) 442, 684
HpyCH4III ACNGT 3 cut(s) 170, 744, 1282
HpyCH4IV ACGT 5 cut(s) 297, 311, 767, 971, 1172
HpyCH4V TGCA 8 cut(s) 189, 322, 378, 436, 834, 941, 1127, 1216
HpyF3I CTNAG 4 cut(s) 257, 570, 715, 1071
HpySE526I ACGT 5 cut(s) 297, 311, 767, 971, 1172
Hsp92I GRCGYC 2 cut(s) 311, 549
Hsp92II CATG 4 cut(s) 460, 1087, 1330, 1371
HspAI GCGC 4 cut(s) 205, 341, 452, 1193
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
LmnI GCTCC 8 cut(s) 73, 228, 877, 1019, 1081, 1107, 1221, 1298
LweI GCATC 1 cut(s) 656
MaeI CTAG 9 cut(s) 35, 474, 510, 584, 843, 849, 861, 876, 1137
MaeII ACGT 5 cut(s) 297, 311, 767, 971, 1172
MaeIII GTNAC 1 cut(s) 545
MalI GATC 6 cut(s) 117, 134, 185, 351, 1038, 1323
MbiI CCGCTC 1 cut(s) 412
MboI GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
MboII GAAGA 8 cut(s) 18, 92, 100, 406, 433, 472, 1015, 1142
MflI RGATCY 2 cut(s) 115, 183
MhlI GDGCHC 4 cut(s) 324, 419, 620, 1337
MlsI TGGCCA 1 cut(s) 1169
MluCI AATT 4 cut(s) 22, 719, 829, 907
MluNI TGGCCA 1 cut(s) 1169
MmeI TCCRAC 1 cut(s) 1029
Mox20I TGGCCA 1 cut(s) 1169
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 1169
MseI TTAA 2 cut(s) 363, 773
Msp20I TGGCCA 1 cut(s) 1169
MspA1I CMGCKG 3 cut(s) 598, 1130, 1289
MspI CCGG 2 cut(s) 105, 357
MspR9I CCNGG 3 cut(s) 105, 358, 1190
Mva1269I GAATGC 2 cut(s) 114, 628
MvaI CCWGG 1 cut(s) 1190
MvnI CGCG 2 cut(s) 207, 431
NciI CCSGG 2 cut(s) 105, 358
NdeII GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 4 cut(s) 460, 1087, 1330, 1371
NlaIV GGNNCC 6 cut(s) 75, 200, 966, 1015, 1077, 1335
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 545
PagI TCATGA 1 cut(s) 1326
PcsI WCGNNNNNNNCGW 4 cut(s) 303, 555, 773, 782
PctI GAATGC 2 cut(s) 114, 628
PdmI GAANNNNTTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 103
PmaCI CACGTG 1 cut(s) 768
PmlI CACGTG 1 cut(s) 768
Ppu21I YACGTR 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 1188
PspCI CACGTG 1 cut(s) 768
PspFI CCCAGC 2 cut(s) 343, 1289
PspGI CCWGG 1 cut(s) 1188
PspN4I GGNNCC 6 cut(s) 75, 200, 966, 1015, 1077, 1335
PspOMI GGGCCC 1 cut(s) 1333
PspPI GGNCC 2 cut(s) 1333, 1334
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 115, 183
PvuII CAGCTG 3 cut(s) 598, 1130, 1289
RsaI GTAC 5 cut(s) 428, 482, 781, 847, 880
RsaNI GTAC 5 cut(s) 427, 481, 780, 846, 879
SaqAI TTAA 2 cut(s) 363, 773
Sau3AI GATC 6 cut(s) 115, 132, 183, 349, 1036, 1321
Sau96I GGNCC 2 cut(s) 1333, 1334
ScaI AGTACT 2 cut(s) 847, 880
ScrFI CCNGG 3 cut(s) 105, 358, 1190
SduI GDGCHC 4 cut(s) 324, 419, 620, 1337
SfaNI GCATC 1 cut(s) 656
SpeI ACTAGT 4 cut(s) 34, 842, 848, 1136
Sse9I AATT 4 cut(s) 22, 719, 829, 907
SspMI CTAG 9 cut(s) 35, 474, 510, 584, 843, 849, 861, 876, 1137
StyD4I CCNGG 3 cut(s) 103, 356, 1188
StyI CCWWGG 2 cut(s) 552, 583
TaaI ACNGT 3 cut(s) 170, 744, 1282
TaiI ACGT 5 cut(s) 300, 314, 770, 974, 1175
TaqI TCGA 1 cut(s) 419
TasI AATT 4 cut(s) 22, 719, 829, 907
TatI WGTACW 3 cut(s) 480, 845, 878
TauI GCSGC 5 cut(s) 79, 471, 905, 1186, 1266
Tru1I TTAA 2 cut(s) 363, 773
Tru9I TTAA 2 cut(s) 363, 773
TscAI CASTG 1 cut(s) 1223
TseFI GTSAC 1 cut(s) 545
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 2 cut(s) 473, 514
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 1223
VneI GTGCAC 1 cut(s) 320
XapI RAATTY 1 cut(s) 719
XmaJI CCTAGG 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 9 cut(s) 35, 474, 510, 584, 843, 849, 861, 876, 1137
ZraI GACGTC 1 cut(s) 312
ZrmI AGTACT 2 cut(s) 847, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.