pycom12g10450

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013791
Physical Location & Seq
Forward (+)
12457107 .. 12457421
315 bp
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UTR
Exon/CDS
Intron
pycom12g10450.1

Sequence Viewer

Length: 315 bp
ATGGGGGAGCTGGATAATTCCTCATCGCCGTTACTGACGGTTTCAACGGCTTCCGGCAGCGAAGCCAGTTTAACGTCCTCCGCTCACGAAGCCATGACTCATCCGGAGCCGCCGCAAAAGAAAAAGCGAAACCTTCCCGGAATGCCAGATCCCGAAGCGGAGGTGATCGCGCTGTCGCCGACGACTCTCCTCGCAACGAACCGTTTCGTGTGTAAGATCTGCAATAAAGGCTTCCAGCGCGACCAGAACCTGCATCTCACAAGCTCTCTCTCTCTCTTTCTCTCTCTAGCTGCTACCGGAGGTGGGAGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

105

Amino Acids

11.02

Weight (kDa)

7.85

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40030
malus_domestica MD08G1033100.v1.1 MD15G1029700.v1.1
prunus_persica Prupe.1G381800_v2.0.a1
pyrus_communis pycom08g02620 pycom12g10450 pycom15g02610
rosa_chinensis RchiOBHm_Chr6g0300721
rosa_laevigata RLG00000011308
rosa_multiflora Rmu_co8477681.1_g000001
rosa_roxburghii Rroxscaffold_7G00167480
rosa_rugosa Rorug06G0298700
rosa_samantha Rh6AG411300 Rh6BG418600 Rh6CG426000 Rh6DG411500
rosa_wichuraiana Rw6G036000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AccBSI CCGCTC 1 cut(s) 83
AccII CGCG 2 cut(s) 170, 240
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 4 cut(s) 81, 110, 113, 158
AclWI GGATC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 3 cut(s) 10, 264, 290
AluI AGCT 3 cut(s) 10, 264, 290
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 250
Aor13HI TCCGGA 1 cut(s) 103
ApeKI GCWGC 2 cut(s) 57, 290
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 172, 240
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 175
BbvI GCAGC 2 cut(s) 69, 277
BceAI ACGGC 2 cut(s) 13, 63
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 258
BglII AGATCT 1 cut(s) 216
BisI GCNGC 4 cut(s) 58, 110, 113, 291
BlsI GCNGC 4 cut(s) 59, 111, 114, 292
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 103, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 103
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 69, 277
Bsh1236I CGCG 2 cut(s) 170, 240
BsiSI CCGG 4 cut(s) 54, 104, 138, 297
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 148, 165, 216
BspACI CCGC 4 cut(s) 81, 110, 113, 158
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 2 cut(s) 170, 240
BspLI GGNNCC 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 66
BssMI GATC 3 cut(s) 148, 165, 216
Bst4CI ACNGT 2 cut(s) 40, 203
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 2 cut(s) 170, 240
BstHHI GCGC 2 cut(s) 172, 240
BstKTI GATC 3 cut(s) 151, 168, 219
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 3 cut(s) 148, 165, 216
BstMWI GCNNNNNNNGC 3 cut(s) 89, 228, 237
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 2 cut(s) 170, 240
BstV1I GCAGC 2 cut(s) 69, 277
BstX2I RGATCY 2 cut(s) 148, 216
BstYI RGATCY 2 cut(s) 148, 216
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 2 cut(s) 172, 240
CviAII CATG 1 cut(s) 94
CviJI RGCY 8 cut(s) 10, 50, 65, 92, 109, 231, 264, 290
CviKI_1 RGCY 8 cut(s) 10, 50, 65, 92, 109, 231, 264, 290
DpnI GATC 3 cut(s) 150, 167, 218
DpnII GATC 3 cut(s) 148, 165, 216
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 58, 110, 113, 291
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 58, 110, 113, 291
FspBI CTAG 1 cut(s) 287
GlaI GCGC 2 cut(s) 171, 239
GluI GCNGC 4 cut(s) 58, 110, 113, 291
HapII CCGG 4 cut(s) 54, 104, 138, 297
HhaI GCGC 2 cut(s) 172, 240
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 170, 238
HinP1I GCGC 2 cut(s) 170, 238
HinfI GANTC 2 cut(s) 97, 184
HpaII CCGG 4 cut(s) 54, 104, 138, 297
HphI GGTGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 86, 104, 152
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 40, 203
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 222, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 228, 237
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 170, 238
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 148, 165, 216
LmnI GCTCC 2 cut(s) 7, 106
LpnPI CCDG 9 cut(s) 67, 79, 117, 151, 159, 248, 257, 263, 310
Lsp1109I GCAGC 2 cut(s) 69, 277
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 30
MalI GATC 3 cut(s) 150, 167, 218
MbiI CCGCTC 1 cut(s) 83
MboI GATC 3 cut(s) 148, 165, 216
MflI RGATCY 2 cut(s) 148, 216
MluCI AATT 1 cut(s) 16
MlyI GAGTC 2 cut(s) 91, 178
MnlI CCTC 5 cut(s) 31, 88, 154, 200, 293
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 71
MspI CCGG 4 cut(s) 54, 104, 138, 297
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 2 cut(s) 170, 240
MwoI GCNNNNNNNGC 3 cut(s) 89, 228, 237
NciI CCSGG 1 cut(s) 138
NdeII GATC 3 cut(s) 148, 165, 216
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 108
PctI GAATGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 4 cut(s) 59, 111, 114, 292
PleI GAGTC 2 cut(s) 91, 178
PpsI GAGTC 2 cut(s) 91, 178
PspN4I GGNNCC 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 148, 216
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 58, 110, 113, 291
Sau3AI GATC 3 cut(s) 148, 165, 216
SchI GAGTC 2 cut(s) 91, 178
ScrFI CCNGG 1 cut(s) 138
SetI ASST 8 cut(s) 12, 77, 135, 165, 252, 266, 292, 304
SfaNI GCATC 1 cut(s) 262
Sse9I AATT 1 cut(s) 16
SsiI CCGC 4 cut(s) 81, 110, 113, 158
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 40, 203
TaiI ACGT 1 cut(s) 77
TasI AATT 1 cut(s) 16
TauI GCSGC 2 cut(s) 112, 115
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseI GCWGC 2 cut(s) 57, 290
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.