Rmu_co8477681.1_g000001

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8477681.1
OG0013791
Physical Location & Seq
Forward (+)
281 .. 1260
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8477681.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
atgggcgaccttgacaattcctcctcactagttggttctaccgcttcaggagaagctactttttcggagcctcctgccaagaagaagcgaaatcttcccggaatgccagatcctgaagcggaggtgatcgcactgtcgccgaaaactctgatggcgacgaaccgtttcgtgtgcgagatctgcaacaaagggttccagcgcgaccaaaacctccagctccaccgcagaggccacaacctgccgtggaagctgaggcagcgaaccacgacggaggttcggaagcgggtttacgtctgccccgagacgtcgtgcgtgcaccacaacccgacccgagcgctgggcgatctcaccgggattaagaagcacttttgcagaaagcacggcgagaagaagtggaagtgcgagcggtgctcgaagaagtacgcggtgcaatctgattggaaggcgcacatgaagacctgcggcactagagagtacaaatgtgattgtggaactttgttctctaggagggatagcttcataacgcatagggctttctgtgatgccttggccgaggagagtgctaaggctcaaaccctaggaagctcgcagcttgcaaatccgaccccgagcccgaatggtggaaaggcggttgtggtggcatcgccgcctccaccgcctctcacaccttccaataatgtggtatctccagctctatccattcaaagctcaggtaacatcaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

241

Amino Acids

26.53

Weight (kDa)

9.56

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40030
malus_domestica MD08G1033100.v1.1 MD15G1029700.v1.1
prunus_persica Prupe.1G381800_v2.0.a1
pyrus_communis pycom08g02620 pycom12g10450 pycom15g02610
rosa_chinensis RchiOBHm_Chr6g0300721
rosa_laevigata RLG00000011308
rosa_multiflora Rmu_co8477681.1_g000001
rosa_roxburghii Rroxscaffold_7G00167480
rosa_rugosa Rorug06G0298700
rosa_samantha Rh6AG411300 Rh6BG418600 Rh6CG426000 Rh6DG411500
rosa_wichuraiana Rw6G036000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 308
Acc36I ACCTGC 2 cut(s) 246, 467
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 2 cut(s) 201, 425
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 2 cut(s) 30, 135
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 2 cut(s) 422, 476
AfeI AGCGCT 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 337, 620
AgsI TTSAA 1 cut(s) 704
AhlI ACTAGT 1 cut(s) 28
AluBI AGCT 8 cut(s) 56, 217, 250, 516, 585, 592, 692, 708
AluI AGCT 8 cut(s) 56, 217, 250, 516, 585, 592, 692, 708
Alw21I GWGCWC 2 cut(s) 318, 413
Alw26I GTCTC 1 cut(s) 296
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 3 cut(s) 299, 330, 607
Aor51HI AGCGCT 1 cut(s) 336
AoxI GGCC 2 cut(s) 229, 549
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 256, 589
Asp700I GAANNNNTTC 1 cut(s) 164
AspA2I CCTAGG 1 cut(s) 577
AspLEI GCGC 3 cut(s) 201, 337, 448
AsuC2I CCSGG 2 cut(s) 99, 352
AsuHPI GGTGA 2 cut(s) 136, 340
AvaI CYCGRG 3 cut(s) 299, 330, 607
AvrII CCTAGG 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 614
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 318, 413
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 268, 601
BccI CCATC 1 cut(s) 145
BceAI ACGGC 2 cut(s) 226, 397
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BcnI CCSGG 2 cut(s) 99, 352
BcoDI GTCTC 1 cut(s) 296
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 4 cut(s) 29, 468, 504, 578
BfoI RGCGCY 1 cut(s) 338
BfuAI ACCTGC 2 cut(s) 246, 467
BglII AGATCT 1 cut(s) 177
BisI GCNGC 4 cut(s) 257, 463, 590, 647
BlnI CCTAGG 1 cut(s) 577
BlsI GCNGC 4 cut(s) 258, 464, 591, 648
Bme1390I CCNGG 2 cut(s) 99, 352
BmeT110I CYCGRG 3 cut(s) 299, 330, 607
BmiI GGNNCC 2 cut(s) 69, 194
BmrFI CCNGG 2 cut(s) 99, 352
BmsI GCATC 2 cut(s) 532, 650
BpiI GAAGAC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 2 cut(s) 197, 672
Bpu10I CCTNAGC 3 cut(s) 251, 564, 709
BpuMI CCSGG 2 cut(s) 99, 352
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 4 cut(s) 242, 546, 552, 577
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 620
BseDI CCNNGG 4 cut(s) 242, 546, 552, 577
BseLI CCNNNNNNNGG 2 cut(s) 337, 620
BseMII CTCAG 2 cut(s) 242, 723
BseRI GAGGAG 2 cut(s) 13, 569
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 268, 601
BseYI CCCAGC 1 cut(s) 337
Bsh1236I CGCG 2 cut(s) 201, 425
BshFI GGCC 2 cut(s) 231, 551
BsiHKAI GWGCWC 2 cut(s) 318, 413
BsiHKCI CYCGRG 3 cut(s) 299, 330, 607
BsiSI CCGG 2 cut(s) 99, 351
BslI CCNNNNNNNGG 2 cut(s) 337, 620
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 2 cut(s) 231, 551
BsoBI CYCGRG 3 cut(s) 299, 330, 607
Bsp1286I GDGCHC 3 cut(s) 318, 413, 614
Bsp143I GATC 4 cut(s) 109, 126, 177, 343
BspANI GGCC 2 cut(s) 231, 551
BspCNI CTCAG 2 cut(s) 243, 722
BspFNI CGCG 2 cut(s) 201, 425
BspLI GGNNCC 2 cut(s) 69, 194
BspMI ACCTGC 2 cut(s) 246, 467
BspPI GGATC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 406
BssECI CCNNGG 4 cut(s) 242, 546, 552, 577
BssMI GATC 4 cut(s) 109, 126, 177, 343
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 2 cut(s) 546, 577
Bst4CI ACNGT 2 cut(s) 135, 164
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 314, 404, 587, 594
BstDEI CTNAG 3 cut(s) 251, 564, 709
BstDSI CCRYGG 1 cut(s) 242
BstFNI CGCG 2 cut(s) 201, 425
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 3 cut(s) 201, 337, 448
BstKTI GATC 4 cut(s) 112, 129, 180, 346
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 4 cut(s) 109, 126, 177, 343
BstMWI GCNNNNNNNGC 5 cut(s) 180, 247, 256, 408, 655
BstSCI CCNGG 2 cut(s) 97, 350
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 2 cut(s) 201, 425
BstV1I GCAGC 2 cut(s) 268, 601
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 2 cut(s) 109, 177
BstXI CCANNNNNNTGG 1 cut(s) 679
BstYI RGATCY 2 cut(s) 109, 177
BsuRI GGCC 2 cut(s) 231, 551
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 131
BveI ACCTGC 2 cut(s) 246, 467
Cac8I GCNNGC 4 cut(s) 314, 404, 587, 594
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 3 cut(s) 201, 337, 448
Csp6I GTAC 2 cut(s) 421, 475
CviAII CATG 1 cut(s) 451
CviQI GTAC 2 cut(s) 421, 475
DdeI CTNAG 3 cut(s) 251, 564, 709
DpnI GATC 4 cut(s) 111, 128, 179, 345
DpnII GATC 4 cut(s) 109, 126, 177, 343
EaeI YGGCCR 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 546, 577
Eco24I GRGCYC 1 cut(s) 614
Eco47III AGCGCT 1 cut(s) 336
Eco57I CTGAAG 2 cut(s) 30, 135
Eco88I CYCGRG 3 cut(s) 299, 330, 607
EcoT14I CCWWGG 2 cut(s) 546, 577
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 2 cut(s) 546, 577
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 1 cut(s) 454
FaiI YATR 3 cut(s) 452, 521, 528
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 1 cut(s) 450
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 257, 463, 590, 647
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 4 cut(s) 257, 463, 590, 647
FspBI CTAG 4 cut(s) 29, 468, 504, 578
GlaI GCGC 3 cut(s) 200, 336, 447
GluI GCNGC 4 cut(s) 257, 463, 590, 647
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 2 cut(s) 197, 672
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 2 cut(s) 231, 551
HapII CCGG 2 cut(s) 99, 351
HhaI GCGC 3 cut(s) 201, 337, 448
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 3 cut(s) 199, 335, 446
HinP1I GCGC 3 cut(s) 199, 335, 446
HpaII CCGG 2 cut(s) 99, 351
HphI GGTGA 2 cut(s) 136, 340
Hpy166II GTNNAC 2 cut(s) 289, 316
Hpy188I TCNGA 5 cut(s) 67, 150, 279, 436, 603
Hpy188III TCNNGA 2 cut(s) 48, 113
Hpy8I GTNNAC 2 cut(s) 289, 316
Hpy99I CGWCG 3 cut(s) 160, 271, 310
HpyAV CCTTC 2 cut(s) 436, 678
HpyCH4III ACNGT 2 cut(s) 135, 164
HpyCH4IV ACGT 2 cut(s) 291, 305
HpyCH4V TGCA 5 cut(s) 183, 316, 372, 430, 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 180, 247, 256, 408, 655
HpyF3I CTNAG 3 cut(s) 251, 564, 709
HpySE526I ACGT 2 cut(s) 291, 305
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 3 cut(s) 199, 335, 446
Kzo9I GATC 4 cut(s) 109, 126, 177, 343
LmnI GCTCC 2 cut(s) 67, 222
Lsp1109I GCAGC 2 cut(s) 268, 601
LweI GCATC 2 cut(s) 532, 650
MaeI CTAG 4 cut(s) 29, 468, 504, 578
MaeII ACGT 2 cut(s) 291, 305
MaeIII GTNAC 1 cut(s) 713
MalI GATC 4 cut(s) 111, 128, 179, 345
MbiI CCGCTC 1 cut(s) 406
MboI GATC 4 cut(s) 109, 126, 177, 343
MboII GAAGA 5 cut(s) 86, 94, 400, 427, 466
MflI RGATCY 2 cut(s) 109, 177
MhlI GDGCHC 3 cut(s) 318, 413, 614
MluCI AATT 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 357
MspI CCGG 2 cut(s) 99, 351
MspR9I CCNGG 2 cut(s) 99, 352
Mva1269I GAATGC 1 cut(s) 108
MvnI CGCG 2 cut(s) 201, 425
MwoI GCNNNNNNNGC 5 cut(s) 180, 247, 256, 408, 655
NciI CCSGG 2 cut(s) 99, 352
NdeII GATC 4 cut(s) 109, 126, 177, 343
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 2 cut(s) 69, 194
NmeAIII GCCGAG 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 4 cut(s) 258, 464, 591, 648
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 69, 194
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 109, 177
RsaI GTAC 2 cut(s) 422, 476
RsaNI GTAC 2 cut(s) 421, 475
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 4 cut(s) 257, 463, 590, 647
Sau3AI GATC 4 cut(s) 109, 126, 177, 343
ScrFI CCNGG 2 cut(s) 99, 352
SduI GDGCHC 3 cut(s) 318, 413, 614
SfaNI GCATC 2 cut(s) 532, 650
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 1 cut(s) 16
SspMI CTAG 4 cut(s) 29, 468, 504, 578
StyD4I CCNGG 2 cut(s) 97, 350
StyI CCWWGG 2 cut(s) 546, 577
TaaI ACNGT 2 cut(s) 135, 164
TaiI ACGT 2 cut(s) 294, 308
TaqI TCGA 1 cut(s) 413
TasI AATT 1 cut(s) 16
TatI WGTACW 1 cut(s) 474
TauI GCSGC 2 cut(s) 465, 649
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 138
TseI GCWGC 2 cut(s) 256, 589
TspDTI ATGAA 2 cut(s) 467, 508
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 138
VneI GTGCAC 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 4 cut(s) 29, 468, 504, 578
ZraI GACGTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.