Rorug06G0298700

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013791
Physical Location & Seq
Forward (+)
45137703 .. 45138734
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0298700.1

Sequence Viewer

Length: 1032 bp
ATGCGATTGTTTAGTCCTGTAACAATATCAAACAACAATCTAGTTTGGAAGGTGTTAAGTGGTCGTATATTATCGGATGACCTCCTTCAAAAGAGAGGGGTCTCTCTTGCATCTCGGTGTTATCTTTGCCACATTCAAGTGGAGTCTCTTGAGCATATTTTTCTCTCTTGTTCTTTTGCATCATCGTTATGGCAATGCTTAGTGCATGTGTTTGAGCTAGGCATGGTTCATGGTTCCCTTATGGAGAGGTTACAACGGGGCTTGGATCATAGTCGCAGTCCTCAATTGCGTGAGCTATGGCTCACCGCTTTTGTGGCTTTATTATGGTGCATTTGGCATTTTCGAAACCGGGCTAAGTTTGATGGTGTGCAGGCCAACATGAATAATGCTTGGAGATTAATTAAAGGGAAAGTTAGCTCCTCCGATAGAATTGGTTCTGGTTGCATGTACAATTCTGTTCAAGATCTTACTATTTTGAAGAAGTTTCATATCCCCTGCAAGCCTCGTAGGGCTCCATGTATTGTCGAAGTTAATTGGCATCCTCCACTTCTTGGTTGGGTAAAGATTAACACTGACGGTGCTTGGCGTAGCTCTTCTGGTCATGCGGGTTATGGTGGCATCTTTAGAGATTTCAGAGGTGGTATTATGGGTGCCTTTTGCTCTAATCTTAATATTCCAAGCTCTGTGGCAGCGGAGGTTATGGCAGTCATCAAGGCTATTGAGTTAGCTTGGGTCCGGGATTGGAAATATATATGGTTAGAAGTGGACTCGGCTCTTGTCCTTTCATTCCTTCATTCTCTGCACTTGGTACCTTGGCAGCTACAAATTGAGTGGCATAATTGTTTGCATCGTATCTCTCAGATGCATTTCCGTTCTTCACACATCTATCGTGAGGGCAACCAAGCTGCAGATGTTTTTGCTAACATGGGTCTCTCTTCTACTGGTTTAACATGGTGGGACATACCCCCAGATCTTATTCGTTCTCATTGTCGGAAGGACTCCTTGGGGTTGCCTAATTTTCGTGTTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

343

Amino Acids

39.24

Weight (kDa)

9.37

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 12 - 64 8.6e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 190 - 309 1.3e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40030
malus_domestica MD08G1033100.v1.1 MD15G1029700.v1.1
prunus_persica Prupe.1G381800_v2.0.a1
pyrus_communis pycom08g02620 pycom12g10450 pycom15g02610
rosa_chinensis RchiOBHm_Chr6g0300721
rosa_laevigata RLG00000011308
rosa_multiflora Rmu_co8477681.1_g000001
rosa_roxburghii Rroxscaffold_7G00167480
rosa_rugosa Rorug06G0298700
rosa_samantha Rh6AG411300 Rh6BG418600 Rh6CG426000 Rh6DG411500
rosa_wichuraiana Rw6G036000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 808
AccB1I GGYRCC 2 cut(s) 650, 808
AccB7I CCANNNNNTGG 1 cut(s) 551
AciI CCGC 3 cut(s) 306, 605, 692
AclWI GGATC 1 cut(s) 273
AfaI GTAC 2 cut(s) 449, 810
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 4 cut(s) 89, 137, 461, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 986, 1018
AluBI AGCT 8 cut(s) 217, 295, 417, 591, 681, 728, 820, 905
AluI AGCT 8 cut(s) 217, 295, 417, 591, 681, 728, 820, 905
Alw26I GTCTC 3 cut(s) 106, 150, 935
AlwI GGATC 1 cut(s) 273
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 3 cut(s) 689, 817, 905
AseI ATTAAT 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 433
Asp718I GGTACC 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 733
AsuC2I CCSGG 2 cut(s) 350, 737
AsuHPI GGTGA 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 343
AvaII GGWCC 1 cut(s) 733
BanI GGYRCC 2 cut(s) 650, 808
BanII GRGCYC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 701, 829, 892
BccI CCATC 1 cut(s) 356
BcnI CCSGG 2 cut(s) 350, 737
BcoDI GTCTC 3 cut(s) 106, 150, 935
BfaI CTAG 2 cut(s) 41, 218
BfmI CTRYAG 1 cut(s) 906
BglII AGATCT 2 cut(s) 463, 970
BisI GCNGC 3 cut(s) 690, 818, 906
BlsI GCNGC 3 cut(s) 691, 819, 907
Bme1390I CCNGG 2 cut(s) 350, 737
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 5 cut(s) 235, 513, 652, 734, 810
BmrFI CCNGG 2 cut(s) 350, 737
BmsI GCATC 6 cut(s) 119, 188, 547, 627, 852, 856
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 350, 737
BsaI GGTCTC 2 cut(s) 106, 935
BsaJI CCNNGG 2 cut(s) 812, 1002
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 812, 1002
BseGI GGATG 2 cut(s) 82, 538
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 1 cut(s) 409
BseXI GCAGC 3 cut(s) 701, 829, 892
BsgI GTGCAG 2 cut(s) 389, 785
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 2 cut(s) 650, 808
BsiSI CCGG 2 cut(s) 349, 736
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 3 cut(s) 106, 150, 935
BsmFI GGGAC 1 cut(s) 971
BsnI GGCC 1 cut(s) 374
Bso31I GGTCTC 2 cut(s) 106, 935
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 3 cut(s) 265, 463, 970
BspACI CCGC 3 cut(s) 306, 605, 692
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 871
BspLI GGNNCC 5 cut(s) 235, 513, 652, 734, 810
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 598
BspT104I TTCGAA 1 cut(s) 343
BspT107I GGYRCC 2 cut(s) 650, 808
BspTNI GGTCTC 2 cut(s) 106, 935
BsrDI GCAATG 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 447
BsrI ACTGG 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 812, 1002
BssMI GATC 3 cut(s) 265, 463, 970
BssT1I CCWWGG 2 cut(s) 812, 1002
Bst4CI ACNGT 1 cut(s) 578
Bst6I CTCTTC 2 cut(s) 598, 940
BstAUI TGTACA 1 cut(s) 447
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 372, 500
BstDEI CTNAG 3 cut(s) 199, 354, 858
BstF5I GGATG 2 cut(s) 82, 538
BstKTI GATC 3 cut(s) 268, 466, 973
BstMAI GTCTC 3 cut(s) 106, 150, 935
BstMBI GATC 3 cut(s) 265, 463, 970
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 2 cut(s) 209, 448
BstSCI CCNGG 2 cut(s) 348, 735
BstSFI CTRYAG 1 cut(s) 906
BstV1I GCAGC 3 cut(s) 701, 829, 892
BstX2I RGATCY 2 cut(s) 463, 970
BstYI RGATCY 2 cut(s) 463, 970
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 82, 538
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 372, 500
Cfr13I GGNCC 1 cut(s) 733
Csp6I GTAC 2 cut(s) 448, 809
CspCI CAANNNNNGTGG 4 cut(s) 666, 701, 812, 847
CviAII CATG 9 cut(s) 206, 223, 230, 379, 445, 516, 602, 925, 951
CviQI GTAC 2 cut(s) 448, 809
DdeI CTNAG 3 cut(s) 199, 354, 858
DpnI GATC 3 cut(s) 267, 465, 972
DpnII GATC 3 cut(s) 265, 463, 970
Eam1104I CTCTTC 2 cut(s) 598, 940
EarI CTCTTC 2 cut(s) 598, 940
Eco130I CCWWGG 2 cut(s) 812, 1002
Eco24I GRGCYC 1 cut(s) 514
Eco31I GGTCTC 2 cut(s) 106, 935
Eco47I GGWCC 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 812, 1002
EcoT22I ATGCAT 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 2 cut(s) 812, 1002
FaeI CATG 9 cut(s) 209, 226, 233, 382, 448, 519, 605, 928, 954
FalI AAGNNNNNCTT 2 cut(s) 986, 1018
FaqI GGGAC 1 cut(s) 971
FatI CATG 9 cut(s) 205, 222, 229, 378, 444, 515, 601, 924, 950
FauI CCCGC 1 cut(s) 598
Fnu4HI GCNGC 3 cut(s) 690, 818, 906
FokI GGATG 2 cut(s) 89, 525
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 3 cut(s) 690, 818, 906
FspBI CTAG 2 cut(s) 41, 218
GluI GCNGC 3 cut(s) 690, 818, 906
HaeIII GGCC 1 cut(s) 374
HapII CCGG 2 cut(s) 349, 736
Hin1II CATG 9 cut(s) 209, 226, 233, 382, 448, 519, 605, 928, 954
HinfI GANTC 3 cut(s) 143, 767, 998
HpaII CCGG 2 cut(s) 349, 736
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 766
Hpy188I TCNGA 5 cut(s) 76, 424, 635, 861, 993
Hpy188III TCNNGA 3 cut(s) 149, 461, 890
Hpy8I GTNNAC 1 cut(s) 766
HpyAV CCTTC 4 cut(s) 43, 95, 800, 988
HpyCH4III ACNGT 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 199, 354, 858
Hsp92II CATG 9 cut(s) 209, 226, 233, 382, 448, 519, 605, 928, 954
KpnI GGTACC 1 cut(s) 812
Kzo9I GATC 3 cut(s) 265, 463, 970
LguI GCTCTTC 1 cut(s) 598
LmnI GCTCC 2 cut(s) 422, 517
LpnPI CCDG 9 cut(s) 30, 356, 362, 423, 508, 582, 749, 927, 981
Lsp1109I GCAGC 3 cut(s) 701, 829, 892
LweI GCATC 6 cut(s) 119, 188, 547, 627, 852, 856
MaeI CTAG 2 cut(s) 41, 218
MaeIII GTNAC 2 cut(s) 19, 249
MalI GATC 3 cut(s) 267, 465, 972
MboI GATC 3 cut(s) 265, 463, 970
MboII GAAGA 4 cut(s) 490, 585, 867, 927
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 2 cut(s) 463, 970
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 8 cut(s) 284, 399, 429, 451, 532, 825, 838, 1015
MlyI GAGTC 3 cut(s) 152, 761, 992
MmeI TCCRAC 1 cut(s) 971
Mph1103I ATGCAT 1 cut(s) 867
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 7 cut(s) 56, 398, 402, 531, 567, 669, 947
MslI CAYNNNNRTG 3 cut(s) 115, 137, 187
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 2 cut(s) 349, 736
MspR9I CCNGG 2 cut(s) 350, 737
MunI CAATTG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 2 cut(s) 350, 737
NdeII GATC 3 cut(s) 265, 463, 970
NlaIII CATG 9 cut(s) 209, 226, 233, 382, 448, 519, 605, 928, 954
NlaIV GGNNCC 5 cut(s) 235, 513, 652, 734, 810
NmeAIII GCCGAG 1 cut(s) 749
NsiI ATGCAT 1 cut(s) 867
NspI RCATGY 2 cut(s) 209, 448
NspV TTCGAA 1 cut(s) 343
PacI TTAATTAA 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 551
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 3 cut(s) 691, 819, 907
PleI GAGTC 3 cut(s) 151, 761, 992
PpsI GAGTC 3 cut(s) 151, 761, 992
PshBI ATTAAT 1 cut(s) 398
PspN4I GGNNCC 5 cut(s) 235, 513, 652, 734, 810
PspPI GGNCC 1 cut(s) 733
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 2 cut(s) 463, 970
RsaI GTAC 2 cut(s) 449, 810
RsaNI GTAC 2 cut(s) 448, 809
RseI CAYNNNNRTG 3 cut(s) 115, 137, 187
SapI GCTCTTC 1 cut(s) 598
SaqAI TTAA 7 cut(s) 56, 398, 402, 531, 567, 669, 947
SatI GCNGC 3 cut(s) 690, 818, 906
Sau3AI GATC 3 cut(s) 265, 463, 970
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 3 cut(s) 152, 761, 992
ScrFI CCNGG 2 cut(s) 350, 737
SduI GDGCHC 1 cut(s) 514
SfaNI GCATC 6 cut(s) 119, 188, 547, 627, 852, 856
SfcI CTRYAG 1 cut(s) 906
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 3 cut(s) 115, 137, 187
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 8 cut(s) 284, 399, 429, 451, 532, 825, 838, 1015
SsiI CCGC 3 cut(s) 306, 605, 692
SspI AATATT 1 cut(s) 673
SspMI CTAG 2 cut(s) 41, 218
StyD4I CCNGG 2 cut(s) 348, 735
StyI CCWWGG 2 cut(s) 812, 1002
TaaI ACNGT 1 cut(s) 578
TaqI TCGA 2 cut(s) 343, 525
TasI AATT 8 cut(s) 284, 399, 429, 451, 532, 825, 838, 1015
TatI WGTACW 1 cut(s) 447
Tru1I TTAA 7 cut(s) 56, 398, 402, 531, 567, 669, 947
Tru9I TTAA 7 cut(s) 56, 398, 402, 531, 567, 669, 947
TscAI CASTG 1 cut(s) 577
TseI GCWGC 3 cut(s) 689, 817, 905
TspDTI ATGAA 5 cut(s) 218, 395, 476, 774, 782
TspGWI ACGGA 1 cut(s) 860
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 733
VspI ATTAAT 1 cut(s) 398
XceI RCATGY 2 cut(s) 209, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 2 cut(s) 41, 218
Zsp2I ATGCAT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.