Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

5345076 .. 5352818

Gene Structure 7743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1066800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGGACCCGCAATACCCGACCAAGCCGGCGCGGTCGCACGGGCCGCAGATGAAAATGACGATTCAGCCCTCGCAGCACTCCGACAACGACCGGTCCAGCGGCGAGCTGCGCGCGCTGGATTGCAACCTCACAGCCCTCTGCGACCACATACAGACGGAGGGCTTCAATTCCGGTGCCTTCTCCGATATGGTCGTCCACGCCATGGGCTCCACCTACCATCTCCACCGCCTCATTCTCTCCCGCAGCCCCTACTTCAGGAACATGCTTCATGGACCTTGGAAAGAAGCCAGTGCCCCCGTTTTAACCTTACATATTGACGATAAGAATGTTAACGGAGAAGCAATTGCAATGGCTTTGGCGTATCTATACGGTCACCACCCCAAGCTTAATGATAACAATGCATTTCGTGTTTTGGCTGCCGCTTCTTTTCTTGACCTTCAGGATTTATGTGCAATATGCACAGACTTCATTATATCTGAATTATGGACTTCAAACTTCTTAGCCAATCAGGTGTTCGCGGAGAGCCAAGATTATGGCCTACATGGAGAACGAGTAAGAAATGCTTGCTGGGGCTACCTTTGTCAAAGTGGTTCCATGGAGTTGAAAGAGGTGCTTCCAAAACTTTCAGCTCAAACCCTGCTTGCATTACTGACCTCTGATGAGCTCTGGGTACCCAGTGAAGAGAAACGGTTTGAGCTGGCATTCTATGCATTCCTTGCAAAAGGTGCTCAAAGCAAACAGGAAGACTATGATCATGGAAGTTCCAGTTCTGAGGCAGGAACGGATACTCCATCTGATTCTTCTAACGCAAAGGGAAAGAATCTGATTGATAGATTCGCTAACAAAAGGTTGGAGTCTGAAGTCGGGTGCTTAACTCTAAAAGATGATGTAGAGGGCCATAATACTGCTCGTAGTCTTTTGATAGAGCTTGCAGACTGTGTGGTTGATTTCCAAACAGGAGTTTCAAATTCCAAACAGCAAGTCCAACAAGTTGCGGACCCTCAATCCAATTTGGAGCCAGGATACAACTGCAGCATGGGTGGTCCTTCATCATTAAAAAATTCACTATCAGAAATAGATGTGATGAGAACCTCATGTTATGCTGAAATGCCAGTTGGTGTTGGAGCAAGTAGACTGGGGGCGAATGGAGTGGCTATGGAAGGGCCATCTGATGAAGGATCATGCTTTCACTTAAATAACAACAGTTGGTTTGCCAGGGACCAGTCAAGGCAATGCTCTTCAATGAACTCTTCCACTCGTGAGCTCATGCCAAATGATTGGGGAAGATGTGGCATGCCTCCTCTTTCATGGGGTGGCAGGGTTGTAGGGAGAAGACAGGTTAAAGGTTATGCTAAAGGGAACTTTGGGGTTGGTGGGGAGGAATATGATGCATTTGTTAATATATTTGAAGGCGGATCTCTTTTATACTGCAACATGTCTTTTGAGGCACTTTTGAATGTACGAAAGCAACTTGACGAACTGGGGTTCCCCTGCAAAGCTGTAAACGATGGTCTTTGGCTGCAGATGCTTTTAAGCCAGAGAGTCCAAGAAGTTGGTGCTGATACGTGCAAAAATTGCTGTCTTACAAGTATAGCGTGCAGTTGCAGACAGCAATTTTCATTCTCACAAGGAGTTACTACTGGATACTACATGCAAGAGCATAATCAGAATAATTCTCCTGGTGTATATGTTGCTGAGTCTGCCCCAGGTGAAGGAAATGGTCTCTTTAGGCCTGTACGTGTGCATGTCAGGGGTCCTATTGATGGGCTTGCTGGTATCGGACGCGGAACTACATTTGTACCAGCAACTGCCTGGCCTCCAACTCGGTTTGTTTTTTCCCGTGTGCCATTTGGCATGGGCAACAGAAATTGCCAGCAGTCTCTTGCTAATGATGATTCAGAGGCTAGAGCTGACCATAATGGGGACCTGTCTGGAGATGGATTAACAGCTTTAGTTGGGCTAAGCCAAGGAGGGAACAATGTAGCTAATGCTCATGGGGAGCAAACAGAGAGAGGCTATGAGATGGATATGCAAAGCAGAATGGCTGGAACGTCCATGTCAGTGCCAAGTACTAGTGGTGTACCCATTCAGATGGTAGAGTCGTCAGACCATGCACTTGGGATTGAGTGGGATAATGCAAGCAGTTCTTCCATCTCATTGGATATGAAAACACCTTTAAGTCACTTCCCTCCTTTCCGCTTTGGGGTGCAATTTGAGGATGTGCACAGGCTTAGTGATGGCCAAGTGAAGCACTCTTCAGAAGTCTTTTATGCTGGTTCTTTATGGAAGGTTAGCGTTCAGGCTTTTAATGATGAAGATCCTCAAGGACGTCGAACACTTGGATTATTTATTCACCGACGTAAGGCAGAGATTACTGATTCATTCAGAAAGGTGCAAATGTATGTCGATTCTCGTGAAAAGGTTACAGCCCGCTATCAGTTAATTTGCCCATCAAAGAGGGAAGTCATGGTGTTTGGGAGTTTCAAGCAGACAGGCACGCTTTTACCGAAAGCTCCCAAGGGCTGGGGATGGCGATCAGCTCTGCTGTTTGACGAGCTTGCTGATCTTCTCCAAAACGGGACCCTAAGAGTGGCTGCTGTTGTACAGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

872

Amino Acids

95.59

Weight (kDa)

5.68

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	55 - 159	1.9e-13	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2332
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	2 cut(s)	173, 670
AccB7I	CCANNNNNTGG	2 cut(s)	202, 2523
AccI	GTMKAC	1 cut(s)	1132
AccII	CGCG	5 cut(s)	31, 111, 113, 518, 1785
AclWI	GGATC	3 cut(s)	1186, 1423, 2312
AcoI	YGGCCR	1 cut(s)	2239
AcsI	RAATTY	2 cut(s)	967, 1060
AcuI	CTGAAG	4 cut(s)	238, 422, 879, 2241
AcyI	GRCGYC	1 cut(s)	2329
AfaI	GTAC	7 cut(s)	672, 1461, 1737, 1800, 2071, 2082, 2604
AfiI	CCNNNNNNNGG	9 cut(s)	202, 255, 1712, 1763, 1921, 2203, 2362, 2523, 2590
AflIII	ACRYGT	2 cut(s)	1434, 1738
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	8 cut(s)	166, 492, 604, 966, 1242, 1409, 1456, 2485
AhlI	ACTAGT	1 cut(s)	2072
AjnI	CCWGG	5 cut(s)	1018, 1214, 1678, 1705, 1811
AjuI	GAANNNNNNNTTGG	4 cut(s)	497, 529, 1098, 1130
AloI	GAACNNNNNNTCC	4 cut(s)	772, 804, 1470, 1502
Alw21I	GWGCWC	4 cut(s)	666, 730, 1266, 2226
Alw26I	GTCTC	2 cut(s)	1727, 1884
Alw44I	GTGCAC	1 cut(s)	2222
AlwI	GGATC	3 cut(s)	1186, 1423, 2312
AlwNI	CAGNNNCTG	1 cut(s)	1808
AoxI	GGCC	7 cut(s)	41, 535, 895, 1163, 1730, 1814, 2239
ApaLI	GTGCAC	1 cut(s)	2222
ApeKI	GCWGC	7 cut(s)	73, 106, 243, 416, 1032, 1519, 2594
ApoI	RAATTY	2 cut(s)	967, 1060
ArsI	GACNNNNNNTTYG	2 cut(s)	966, 998
AsiGI	ACCGGT	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	670
AspLEI	GCGC	4 cut(s)	31, 111, 113, 115
AsuHPI	GGTGA	3 cut(s)	365, 1721, 2345
AvaII	GGWCC	9 cut(s)	4, 93, 272, 997, 1043, 1219, 1754, 1924, 2580
BaeGI	GKGCMC	2 cut(s)	295, 2226
BaeI	ACNNNNGTAYC	2 cut(s)	1782, 1815
BalI	TGGCCA	1 cut(s)	2241
BanI	GGYRCC	2 cut(s)	173, 670
BanII	GRGCYC	3 cut(s)	209, 666, 1266
BauI	CACGAG	2 cut(s)	1257, 2412
BbsI	GAAGAC	2 cut(s)	750, 1339
Bbv12I	GWGCWC	4 cut(s)	666, 730, 1266, 2226
BbvI	GCAGC	7 cut(s)	85, 93, 255, 403, 1044, 1506, 2581
BciT130I	CCWGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
BciVI	GTATCC	3 cut(s)	778, 1016, 1637
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	2 cut(s)	1727, 1884
BcuI	ACTAGT	1 cut(s)	2072
BfaI	CTAG	2 cut(s)	1905, 2073
BfmI	CTRYAG	2 cut(s)	1030, 1520
BfuI	GTATCC	3 cut(s)	778, 1016, 1637
BlpI	GCTNAGC	1 cut(s)	1961
BmcAI	AGTACT	1 cut(s)	2071
Bme1390I	CCNGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
Bme18I	GGWCC	9 cut(s)	4, 93, 272, 997, 1043, 1219, 1754, 1924, 2580
BmrFI	CCNGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
BmrI	ACTGGG	3 cut(s)	669, 1145, 1490
BmsI	GCATC	2 cut(s)	1378, 1515
BmuI	ACTGGG	3 cut(s)	669, 1145, 1490
BpiI	GAAGAC	2 cut(s)	750, 1339
BpmI	CTGGAG	1 cut(s)	1953
Bpu1102I	GCTNAGC	1 cut(s)	1961
BpuEI	CTTGAG	1 cut(s)	2307
BsaAI	YACGTR	2 cut(s)	1566, 1739
BsaBI	GATNNNNATC	2 cut(s)	2316, 2533
BsaHI	GRCGYC	1 cut(s)	2329
BsaI	GGTCTC	1 cut(s)	1727
BsaJI	CCNNGG	7 cut(s)	201, 275, 594, 1215, 1705, 1966, 2517
BsaWI	WCCGGW	2 cut(s)	90, 170
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 772, 802
Bsc4I	CCNNNNNNNGG	9 cut(s)	202, 255, 1712, 1763, 1921, 2203, 2362, 2523, 2590
Bse118I	RCCGGY	2 cut(s)	25, 90
Bse1I	ACTGG	8 cut(s)	288, 675, 765, 1112, 1140, 1222, 1485, 1645
Bse3DI	GCAATG	2 cut(s)	354, 1238
Bse8I	GATNNNNATC	2 cut(s)	2316, 2533
BseBI	CCWGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
BseDI	CCNNGG	7 cut(s)	201, 275, 594, 1215, 1705, 1966, 2517
BseGI	GGATG	2 cut(s)	2224, 2534
BseJI	GATNNNNATC	2 cut(s)	2316, 2533
BseLI	CCNNNNNNNGG	9 cut(s)	202, 255, 1712, 1763, 1921, 2203, 2362, 2523, 2590
BseMI	GCAATG	2 cut(s)	354, 1238
BseMII	CTCAG	2 cut(s)	762, 1686
BseNI	ACTGG	8 cut(s)	288, 675, 765, 1112, 1140, 1222, 1485, 1645
BsePI	GCGCGC	2 cut(s)	109, 111
BseRI	GAGGAG	1 cut(s)	1290
BseSI	GKGCMC	2 cut(s)	295, 2226
BseXI	GCAGC	7 cut(s)	85, 93, 255, 403, 1044, 1506, 2581
BseYI	CCCAGC	2 cut(s)	567, 2523
BsgI	GTGCAG	1 cut(s)	1618
Bsh1236I	CGCG	5 cut(s)	31, 111, 113, 518, 1785
Bsh1285I	CGRYCG	2 cut(s)	35, 91
BshFI	GGCC	7 cut(s)	43, 537, 897, 1165, 1732, 1816, 2241
BshNI	GGYRCC	2 cut(s)	173, 670
BshTI	ACCGGT	1 cut(s)	90
BsiEI	CGRYCG	2 cut(s)	35, 91
BsiHKAI	GWGCWC	4 cut(s)	666, 730, 1266, 2226
BsiSI	CCGG	3 cut(s)	26, 91, 171
BslFI	GGGAC	3 cut(s)	1232, 1937, 2593
BslI	CCNNNNNNNGG	9 cut(s)	202, 255, 1712, 1763, 1921, 2203, 2362, 2523, 2590
BsmAI	GTCTC	2 cut(s)	1727, 1884
BsmFI	GGGAC	3 cut(s)	1232, 1937, 2593
BsmI	GAATGC	2 cut(s)	701, 710
BsnI	GGCC	7 cut(s)	43, 537, 897, 1165, 1732, 1816, 2241
Bso31I	GGTCTC	1 cut(s)	1727
Bsp1286I	GDGCHC	6 cut(s)	209, 295, 666, 730, 1266, 2226
Bsp1407I	TGTACA	1 cut(s)	2602
Bsp143I	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
Bsp1720I	GCTNAGC	1 cut(s)	1961
Bsp19I	CCATGG	2 cut(s)	201, 594
BspANI	GGCC	7 cut(s)	43, 537, 897, 1165, 1732, 1816, 2241
BspCNI	CTCAG	2 cut(s)	763, 1687
BspFNI	CGCG	5 cut(s)	31, 111, 113, 518, 1785
BspMAI	CTGCAG	2 cut(s)	1034, 1524
BspPI	GGATC	3 cut(s)	1186, 1423, 2312
BspQI	GCTCTTC	1 cut(s)	1243
BspT107I	GGYRCC	2 cut(s)	173, 670
BspTNI	GGTCTC	1 cut(s)	1727
BsrDI	GCAATG	2 cut(s)	354, 1238
BsrFI	RCCGGY	2 cut(s)	25, 90
BsrGI	TGTACA	1 cut(s)	2602
BsrI	ACTGG	8 cut(s)	288, 675, 765, 1112, 1140, 1222, 1485, 1645
BssAI	RCCGGY	2 cut(s)	25, 90
BssECI	CCNNGG	7 cut(s)	201, 275, 594, 1215, 1705, 1966, 2517
BssHII	GCGCGC	2 cut(s)	109, 111
BssMI	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
BssNI	GRCGYC	1 cut(s)	2329
BssSI	CACGAG	2 cut(s)	1257, 2412
BssT1I	CCWWGG	5 cut(s)	201, 275, 594, 1966, 2517
Bst2BI	CACGAG	2 cut(s)	1257, 2412
Bst2UI	CCWGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
Bst4CI	ACNGT	4 cut(s)	371, 690, 938, 1205
Bst6I	CTCTTC	4 cut(s)	675, 1243, 1255, 2260
BstACI	GRCGYC	1 cut(s)	2329
BstAPI	GCANNNNNTGC	4 cut(s)	707, 716, 725, 1575
BstAUI	TGTACA	1 cut(s)	2602
BstBAI	YACGTR	2 cut(s)	1566, 1739
BstDEI	CTNAG	6 cut(s)	499, 771, 1695, 1961, 2231, 2585
BstDSI	CCRYGG	2 cut(s)	201, 594
BstEII	GGTNACC	1 cut(s)	371
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	2224, 2534
BstFNI	CGCG	5 cut(s)	31, 111, 113, 518, 1785
BstHHI	GCGC	4 cut(s)	31, 111, 113, 115
BstKTI	GATC	6 cut(s)	754, 1181, 1418, 2320, 2537, 2566
BstMAI	GTCTC	2 cut(s)	1727, 1884
BstMBI	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
BstMCI	CGRYCG	2 cut(s)	35, 91
BstNI	CCWGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
BstNSI	RCATGY	5 cut(s)	265, 1297, 1438, 1654, 1748
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	5 cut(s)	1018, 1214, 1678, 1705, 1811
BstSFI	CTRYAG	2 cut(s)	1030, 1520
BstSLI	GKGCMC	2 cut(s)	295, 2226
BstUI	CGCG	5 cut(s)	31, 111, 113, 518, 1785
BstV1I	GCAGC	7 cut(s)	85, 93, 255, 403, 1044, 1506, 2581
BstV2I	GAAGAC	2 cut(s)	750, 1339
BstX2I	RGATCY	2 cut(s)	1415, 2317
BstXI	CCANNNNNNTGG	6 cut(s)	533, 1278, 1553, 2092, 2117, 2158
BstYI	RGATCY	2 cut(s)	1415, 2317
BsuI	GTATCC	3 cut(s)	778, 1016, 1637
BsuRI	GGCC	7 cut(s)	43, 537, 897, 1165, 1732, 1816, 2241
BtgI	CCRYGG	2 cut(s)	201, 594
BtsCI	GGATG	2 cut(s)	2224, 2534
BtsIMutI	CAGTG	3 cut(s)	295, 682, 2067
CaiI	CAGNNNCTG	1 cut(s)	1808
CfoI	GCGC	4 cut(s)	31, 111, 113, 115
Cfr10I	RCCGGY	2 cut(s)	25, 90
CseI	GACGC	1 cut(s)	1791
Csp6I	GTAC	7 cut(s)	671, 1460, 1736, 1799, 2070, 2081, 2603
CspAI	ACCGGT	1 cut(s)	90
CviQI	GTAC	7 cut(s)	671, 1460, 1736, 1799, 2070, 2081, 2603
DdeI	CTNAG	6 cut(s)	499, 771, 1695, 1961, 2231, 2585
DpnI	GATC	6 cut(s)	753, 1180, 1417, 2319, 2536, 2565
DpnII	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
EaeI	YGGCCR	1 cut(s)	2239
Eam1104I	CTCTTC	4 cut(s)	675, 1243, 1255, 2260
EarI	CTCTTC	4 cut(s)	675, 1243, 1255, 2260
EciI	GGCGGA	1 cut(s)	1428
Ecl136II	GAGCTC	2 cut(s)	664, 1264
Eco130I	CCWWGG	5 cut(s)	201, 275, 594, 1966, 2517
Eco147I	AGGCCT	1 cut(s)	1732
Eco24I	GRGCYC	3 cut(s)	209, 666, 1266
Eco31I	GGTCTC	1 cut(s)	1727
Eco47I	GGWCC	9 cut(s)	4, 93, 272, 997, 1043, 1219, 1754, 1924, 2580
Eco53kI	GAGCTC	2 cut(s)	664, 1264
Eco57I	CTGAAG	4 cut(s)	238, 422, 879, 2241
Eco91I	GGTNACC	1 cut(s)	371
EcoICRI	GAGCTC	2 cut(s)	664, 1264
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	3 cut(s)	1754, 1924, 2580
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	5 cut(s)	1018, 1214, 1678, 1705, 1811
EcoT14I	CCWWGG	5 cut(s)	201, 275, 594, 1966, 2517
EcoT22I	ATGCAT	3 cut(s)	403, 712, 1393
EcoT38I	GRGCYC	3 cut(s)	209, 666, 1266
ErhI	CCWWGG	5 cut(s)	201, 275, 594, 1966, 2517
FalI	AAGNNNNNCTT	6 cut(s)	547, 579, 597, 629, 2131, 2163
FaqI	GGGAC	3 cut(s)	1232, 1937, 2593
FauI	CCCGC	3 cut(s)	15, 248, 2438
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	1132
FokI	GGATG	2 cut(s)	2231, 2541
FriOI	GRGCYC	3 cut(s)	209, 666, 1266
FspBI	CTAG	2 cut(s)	1905, 2073
GlaI	GCGC	4 cut(s)	30, 110, 112, 114
GsaI	CCCAGC	2 cut(s)	571, 2527
GsuI	CTGGAG	1 cut(s)	1953
HaeIII	GGCC	7 cut(s)	43, 537, 897, 1165, 1732, 1816, 2241
HapII	CCGG	3 cut(s)	26, 91, 171
HgaI	GACGC	1 cut(s)	1791
HhaI	GCGC	4 cut(s)	31, 111, 113, 115
Hin1I	GRCGYC	1 cut(s)	2329
Hin6I	GCGC	4 cut(s)	29, 109, 111, 113
HinP1I	GCGC	4 cut(s)	29, 109, 111, 113
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	383
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	3 cut(s)	26, 91, 171
HphI	GGTGA	3 cut(s)	365, 1721, 2345
Hpy166II	GTNNAC	6 cut(s)	196, 331, 1133, 1504, 2081, 2224
Hpy188III	TCNNGA	6 cut(s)	256, 431, 440, 1259, 1932, 2414
Hpy8I	GTNNAC	6 cut(s)	196, 331, 1133, 1504, 2081, 2224
Hpy99I	CGWCG	2 cut(s)	2334, 2361
HpyAV	CCTTC	8 cut(s)	187, 446, 1056, 1154, 1169, 1403, 1706, 2281
HpyCH4III	ACNGT	4 cut(s)	371, 690, 938, 1205
HpyCH4IV	ACGT	5 cut(s)	1565, 1738, 2051, 2329, 2359
HpyF3I	CTNAG	6 cut(s)	499, 771, 1695, 1961, 2231, 2585
HpySE526I	ACGT	5 cut(s)	1565, 1738, 2051, 2329, 2359
Hsp92I	GRCGYC	1 cut(s)	2329
HspAI	GCGC	4 cut(s)	29, 109, 111, 113
KflI	GGGWCCC	1 cut(s)	2580
KpnI	GGTACC	1 cut(s)	674
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	751
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
LguI	GCTCTTC	1 cut(s)	1243
LmnI	GCTCC	5 cut(s)	212, 1015, 1124, 1999, 2518
Lsp1109I	GCAGC	7 cut(s)	85, 93, 255, 403, 1044, 1506, 2581
LweI	GCATC	2 cut(s)	1378, 1515
MaeI	CTAG	2 cut(s)	1905, 2073
MaeII	ACGT	5 cut(s)	1565, 1738, 2051, 2329, 2359
MaeIII	GTNAC	4 cut(s)	371, 1633, 2180, 2422
MalI	GATC	6 cut(s)	753, 1180, 1417, 2319, 2536, 2565
MboI	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	2 cut(s)	1415, 2317
MhlI	GDGCHC	6 cut(s)	209, 295, 666, 730, 1266, 2226
MlsI	TGGCCA	1 cut(s)	2241
MluNI	TGGCCA	1 cut(s)	2241
MlyI	GAGTC	4 cut(s)	863, 1551, 1706, 2108
MmeI	TCCRAC	5 cut(s)	105, 831, 1009, 1102, 1844
Mox20I	TGGCCA	1 cut(s)	2241
Mph1103I	ATGCAT	3 cut(s)	403, 712, 1393
MroNI	GCCGGC	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	2241
MslI	CAYNNNNRTG	2 cut(s)	2060, 2090
Msp20I	TGGCCA	1 cut(s)	2241
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	3 cut(s)	26, 91, 171
MspR9I	CCNGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	2 cut(s)	701, 710
MvaI	CCWGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
MvnI	CGCG	5 cut(s)	31, 111, 113, 518, 1785
NaeI	GCCGGC	1 cut(s)	27
NcoI	CCATGG	2 cut(s)	201, 594
NdeII	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
NgoMIV	GCCGGC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	371, 2180
NsiI	ATGCAT	3 cut(s)	403, 712, 1393
NspI	RCATGY	5 cut(s)	265, 1297, 1438, 1654, 1748
PaeI	GCATGC	1 cut(s)	1297
PauI	GCGCGC	2 cut(s)	109, 111
PceI	AGGCCT	1 cut(s)	1732
PciI	ACATGT	1 cut(s)	1434
PciSI	GCTCTTC	1 cut(s)	1243
PcsI	WCGNNNNNNNCGW	1 cut(s)	2504
PctI	GAATGC	2 cut(s)	701, 710
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	7 cut(s)	61, 797, 820, 834, 1895, 2378, 2408
PflMI	CCANNNNNTGG	2 cut(s)	202, 2523
PinAI	ACCGGT	1 cut(s)	90
PleI	GAGTC	4 cut(s)	862, 1550, 1705, 2107
PpsI	GAGTC	4 cut(s)	862, 1550, 1705, 2107
Ppu21I	YACGTR	2 cut(s)	1566, 1739
PpuMI	RGGWCCY	3 cut(s)	1754, 1924, 2580
PscI	ACATGT	1 cut(s)	1434
Psp124BI	GAGCTC	2 cut(s)	666, 1266
Psp5II	RGGWCCY	3 cut(s)	1754, 1924, 2580
Psp6I	CCWGG	5 cut(s)	1018, 1214, 1678, 1705, 1811
PspEI	GGTNACC	1 cut(s)	371
PspFI	CCCAGC	2 cut(s)	567, 2523
PspGI	CCWGG	5 cut(s)	1018, 1214, 1678, 1705, 1811
PspPPI	RGGWCCY	3 cut(s)	1754, 1924, 2580
PstI	CTGCAG	2 cut(s)	1034, 1524
PstNI	CAGNNNCTG	1 cut(s)	1808
PsuI	RGATCY	2 cut(s)	1415, 2317
PteI	GCGCGC	2 cut(s)	109, 111
RsaI	GTAC	7 cut(s)	672, 1461, 1737, 1800, 2071, 2082, 2604
RsaNI	GTAC	7 cut(s)	671, 1460, 1736, 1799, 2070, 2081, 2603
RseI	CAYNNNNRTG	2 cut(s)	2060, 2090
SacI	GAGCTC	2 cut(s)	666, 1266
SapI	GCTCTTC	1 cut(s)	1243
Sau3AI	GATC	6 cut(s)	751, 1178, 1415, 2317, 2534, 2563
ScaI	AGTACT	1 cut(s)	2071
SchI	GAGTC	4 cut(s)	863, 1551, 1706, 2108
ScrFI	CCNGG	5 cut(s)	1020, 1216, 1680, 1707, 1813
SduI	GDGCHC	6 cut(s)	209, 295, 666, 730, 1266, 2226
SfaNI	GCATC	2 cut(s)	1378, 1515
SfcI	CTRYAG	2 cut(s)	1030, 1520
SinI	GGWCC	9 cut(s)	4, 93, 272, 997, 1043, 1219, 1754, 1924, 2580
SmiMI	CAYNNNNRTG	2 cut(s)	2060, 2090
SmlI	CTYRAG	1 cut(s)	2322
SmoI	CTYRAG	1 cut(s)	2322
SpeI	ACTAGT	1 cut(s)	2072
SphI	GCATGC	1 cut(s)	1297
SseBI	AGGCCT	1 cut(s)	1732
SspMI	CTAG	2 cut(s)	1905, 2073
SstI	GAGCTC	2 cut(s)	666, 1266
StuI	AGGCCT	1 cut(s)	1732
StyD4I	CCNGG	5 cut(s)	1018, 1214, 1678, 1705, 1811
StyI	CCWWGG	5 cut(s)	201, 275, 594, 1966, 2517
TaaI	ACNGT	4 cut(s)	371, 690, 938, 1205
TaiI	ACGT	5 cut(s)	1568, 1741, 2054, 2332, 2362
TaqI	TCGA	2 cut(s)	2332, 2406
TatI	WGTACW	2 cut(s)	2069, 2602
TauI	GCSGC	3 cut(s)	46, 102, 422
TfiI	GAWTC	7 cut(s)	61, 797, 820, 834, 1895, 2378, 2408
TscAI	CASTG	3 cut(s)	295, 682, 2067
TseFI	GTSAC	2 cut(s)	371, 2180
TseI	GCWGC	7 cut(s)	73, 106, 243, 416, 1032, 1519, 2594
Tsp45I	GTSAC	2 cut(s)	371, 2180
TspGWI	ACGGA	3 cut(s)	170, 348, 797
TspRI	CASTG	3 cut(s)	295, 682, 2067
Van91I	CCANNNNNTGG	2 cut(s)	202, 2523
VneI	GTGCAC	1 cut(s)	2222
VpaK11BI	GGWCC	9 cut(s)	4, 93, 272, 997, 1043, 1219, 1754, 1924, 2580
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	967, 1060
XceI	RCATGY	5 cut(s)	265, 1297, 1438, 1654, 1748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1809
XmiI	GTMKAC	1 cut(s)	1132
XspI	CTAG	2 cut(s)	1905, 2073
ZraI	GACGTC	1 cut(s)	2330
ZrmI	AGTACT	1 cut(s)	2071
Zsp2I	ATGCAT	3 cut(s)	403, 712, 1393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.