Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

47989709 .. 47995007

Gene Structure 5299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGGAAGCTAACTACGCTAACAACCACCACCACAACCAAGCGACGCGGTGCTTCGGGCCGCAGATGAAAATGACGATTCAGCCCTCGCAGCAGCAGCAGCAGCAGCAGCACTCCGACAACGACCGCAGCAGCGGCGAGCTCCGCGCCCTCGACTGCAACCTCACCTCCCTCTGCGACCACATCCAGACCGAAGGCTTCAACTCCGGCGCCTTCTCCGACGTCCTCGTCCTCGCCATGGGCTCCACCTACCACCTCCACCGCCTCATCCTCTCCCGCAGCCCCTACTTCAGGAATATGCTTCATGGACCTTGGAAAGAAGCCAACGCTCCCATTGTGACGTTACATGTAGATGATAAGAATATTAATGCAGAGGCAATTGCAACGGCCTTGGCGTACTTGTATGGCCACCACCCCAAGCTTAGTGATACCAATGCCTTTCGCGTTCTTGCTGCTGCTTCTTTTCTTGATCTTCAGGATTTATGTGCTATATGCACTGACTTCATTATATCGGAACTATGGACTTCAAACTTCTTAGCCTATCAGGTGTTTGCGGAGGGGCAAGATTATGGCATACATGGAGAACGGGTAAGAAATGCTTGCTGGGGCTACCTTTGTCAAAGCGGTGCCATGGAGTTGAAAGAGGTGCTTCCGAGACTTTCTTCTCAAACGTTGCTTGCATTACTCACCTCTGACGAGCTCTGGATACCCAGTGAAGAGAAACGGTTTGAGCTGGCATTGTGCACATTCCTTTCAAAGGGTGCTCAATGCAAACAGGAAGATTATGATCATGGAAGTTCCAGTTCGGAGACAGGGACGGATGCACATTCTGATTCCTCTAAATTAAATGGAAAGAATCTGACTGATAGCTTCACTAATAAAAGGTTGGAGTCTGAATTGGGGCGCTTAACTCTAAAAGATGATTTAGAGGGACATAATACAGCTCGTAACCTTCTGATAGAGCTTGCAGACTGTGTAGTTGACTTCCAAACAGGAGGTTCAAATGCCAAACAGCAAGTGCAGCAAGTTGCTTACCCTCAGTCAAATTTTGAGCCAGGATACAACTGCAGCATGGGAGGTCCTTCATCATTTAATACATTTTCAGACATAGATGCAATTAGAACTTCATGTTATGCGGAAATGCCTATTGGTGTTGGAGTAAGTAGATTGGGGGAAAATGGAGGGGCTATGGAGGGGCCATCTGATGAAGGGTCATGCTACCATTTAAATAACAATAGTTGGCTTGGTAGGGACCAGTCAAGGCAATGCTCGTCAATGAACTCTTCAAGTAGTGAGCTAATGCCAAATGATTGGGGAAGATGTGGCATGCCTCCTCTTTCCTGGGGTGGCAGGGTTGTAGGCAGAAGACAGCTTAAAGGTTATGGTAAAGGAGAACTTGGGGTTGGTGGGGAGGAATATGATGCATTTGTAAATATATTTGAAGGAGGATCTCTTCTATACTGCAACATGTCTTTTGAAGCACTTTTGAATGTAAGAAAGCAACTTGAGGAAATGGGGTTTCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTTTGAGCCAGAGAGTTCAAGAAATTGGTGCTGATACATGCAAAAGTTGCTGTCTAACAAGCATAGCATGCAGTTGCAGACAGCAATTTTCTTTCTCACATGGAGGTACCACCGGATACTACATGCAAGAGCATAATCAGAGTAACTCTTCTGGAGTATACATCACTGAGTCTGCTCCAGGTGAAGGAAATGGCCTCTTCAGGCCTGTACGTGTGCATGTCAGGGGTCCTATTGATGGGCTTGCTGGTATTGGACGTGGAACCACATTTGTCCCAGCAGCCGCTTGGCCTCCAACTCGGTTCGTCTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTGCCAGCAGTCTCTTGCTAATGATGATTCAGAGGCTAGAGCTGACCACACTGCAGAGCTGTCAGGAGATGGATTGACAGCTTTGGTTGGGCTAAGCCAAGGAGGTAACAATGCAGCTAATGCTCATGTAGAGCAAACAGAGAGGGGCTATGAGATGGATATGCAAAGCCGAATGCCTGGAACTTCCATGTCAATGCCAAGTTCTAGTGGTGCACCTGTGCAGATGGTAGAGTCATCTGACCAAGCACTTGGGATTGAGTGGGATAATGCAAACAGTTCCTCCATATCATTGGATATGAAAACACCTTTAAGTCACTTCCCTCCATTCCGCTTTGGGGTGCAATTTGAGGATGTACACAGACTCAGCGATGGCCAAGTCAAGCACTCTTCAGAAGTCTTTTATGCTGGTTCTTTATGGAAGGTTAGTGTTCAGGCTTTTAATGATGAGGACCCTCAAGGACGCCGAACACTTGGATTATTTCTCCACCGACGTAAAGCTGAGATTACCGACCCGTATAGAAAGGTGCAGATGTATGTCGATTCTCGTGAAAAGGTTACTGCCCGCTACCAGCTAATATGTCCATCAAAGAGGGAAGTCATGGTGTTTGGAAGCTACAAGCAAACAGGCACCCTTTTACCAAAAGCTCCGAAGGGCTGGGGCTGGCGAACAGCTCTGTTATTTGATGAACTTGCAGATCTTCTTCAAAATGGGGCCTTAAGAGTGGCTGCAGTGGTGCAACTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

881

Amino Acids

96.98

Weight (kDa)

5.57

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	66 - 170	9.1e-15	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	222
Acc65I	GGTACC	1 cut(s)	1664
AccB1I	GGYRCC	4 cut(s)	206, 623, 1664, 2525
AccI	GTMKAC	1 cut(s)	1716
AccII	CGCG	3 cut(s)	46, 144, 441
AclI	AACGTT	1 cut(s)	668
AclWI	GGATC	1 cut(s)	1453
AcoI	YGGCCR	2 cut(s)	403, 2269
AcsI	RAATTY	1 cut(s)	1042
AcuI	CTGAAG	4 cut(s)	271, 455, 1741, 2271
AcyI	GRCGYC	3 cut(s)	207, 219, 2359
AfaI	GTAC	4 cut(s)	395, 1666, 1767, 2253
AfiI	CCNNNNNNNGG	6 cut(s)	235, 288, 754, 1742, 1793, 2233
AflII	CTTAAG	1 cut(s)	2614
AflIII	ACRYGT	3 cut(s)	343, 1464, 1768
AjiI	CACGTC	1 cut(s)	1814
AjnI	CCWGG	4 cut(s)	1051, 1337, 1735, 2074
AjuI	GAANNNNNNNTTGG	4 cut(s)	1128, 1160, 1383, 1415
Alw21I	GWGCWC	5 cut(s)	141, 699, 743, 763, 2113
Alw26I	GTCTC	3 cut(s)	646, 800, 1914
Alw44I	GTGCAC	2 cut(s)	739, 2109
AlwI	GGATC	1 cut(s)	1453
AoxI	GGCC	9 cut(s)	56, 384, 403, 1193, 1750, 1760, 1844, 2269, 2610
ApaLI	GTGCAC	2 cut(s)	739, 2109
ApoI	RAATTY	1 cut(s)	1042
AseI	ATTAAT	1 cut(s)	363
Asp718I	GGTACC	1 cut(s)	1664
AspLEI	GCGC	3 cut(s)	146, 209, 903
AspS9I	GGNCC	8 cut(s)	56, 305, 1076, 1193, 1249, 1784, 2347, 2610
AsuHPI	GGTGA	3 cut(s)	154, 676, 1751
AvaII	GGWCC	5 cut(s)	305, 1076, 1249, 1784, 2347
BaeGI	GKGCMC	2 cut(s)	743, 2113
BalI	TGGCCA	2 cut(s)	405, 2271
BanI	GGYRCC	4 cut(s)	206, 623, 1664, 2525
BanII	GRGCYC	3 cut(s)	141, 242, 699
BauI	CACGAG	2 cut(s)	1869, 2442
BbsI	GAAGAC	1 cut(s)	1369
Bbv12I	GWGCWC	5 cut(s)	141, 699, 743, 763, 2113
BccI	CCATC	8 cut(s)	1204, 1532, 1787, 1961, 2047, 2116, 2261, 2488
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	4 cut(s)	1053, 1339, 1737, 2076
BciVI	GTATCC	3 cut(s)	696, 1049, 1667
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	646, 800, 1914
BfaI	CTAG	2 cut(s)	1935, 2103
BfmI	CTRYAG	4 cut(s)	1063, 1550, 1950, 2625
BfoI	RGCGCY	2 cut(s)	210, 904
BfrI	CTTAAG	1 cut(s)	2614
BfuI	GTATCC	3 cut(s)	696, 1049, 1667
BglII	AGATCT	1 cut(s)	2593
BlpI	GCTNAGC	1 cut(s)	1991
Bme1390I	CCNGG	4 cut(s)	1053, 1339, 1737, 2076
Bme18I	GGWCC	5 cut(s)	305, 1076, 1249, 1784, 2347
BmgBI	CACGTC	1 cut(s)	1814
BmgT120I	GGNCC	8 cut(s)	56, 305, 1076, 1193, 1249, 1784, 2347, 2610
BmrFI	CCNGG	4 cut(s)	1053, 1339, 1737, 2076
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	4 cut(s)	808, 1099, 1408, 1545
BmuI	ACTGGG	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	1369
BpmI	CTGGAG	2 cut(s)	1719, 1731
Bpu1102I	GCTNAGC	1 cut(s)	1991
BpuEI	CTTGAG	2 cut(s)	1523, 2337
BsaAI	YACGTR	1 cut(s)	1769
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	3 cut(s)	207, 219, 2359
BsaJI	CCNNGG	6 cut(s)	234, 308, 387, 627, 1338, 1996
BsaWI	WCCGGW	1 cut(s)	1670
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 570, 600, 2162, 2192
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 288, 754, 1742, 1793, 2233
Bse1I	ACTGG	3 cut(s)	708, 798, 1252
Bse3DI	GCAATG	1 cut(s)	1268
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	1053, 1339, 1737, 2076
BseDI	CCNNGG	6 cut(s)	234, 308, 387, 627, 1338, 1996
BseGI	GGATG	4 cut(s)	180, 264, 823, 2254
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	6 cut(s)	235, 288, 754, 1742, 1793, 2233
BseMI	GCAATG	1 cut(s)	1268
BseMII	CTCAG	4 cut(s)	1049, 1716, 2275, 2388
BseNI	ACTGG	3 cut(s)	708, 798, 1252
BseRI	GAGGAG	1 cut(s)	1320
BseSI	GKGCMC	2 cut(s)	743, 2113
BseYI	CCCAGC	3 cut(s)	600, 1831, 2553
BsgI	GTGCAG	3 cut(s)	1037, 2138, 2444
Bsh1236I	CGCG	3 cut(s)	46, 144, 441
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	9 cut(s)	58, 386, 405, 1195, 1752, 1762, 1846, 2271, 2612
BshNI	GGYRCC	4 cut(s)	206, 623, 1664, 2525
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	5 cut(s)	141, 699, 743, 763, 2113
BsiSI	CCGG	2 cut(s)	204, 1671
BslFI	GGGAC	4 cut(s)	826, 942, 1262, 1814
BslI	CCNNNNNNNGG	6 cut(s)	235, 288, 754, 1742, 1793, 2233
BsmAI	GTCTC	3 cut(s)	646, 800, 1914
BsmFI	GGGAC	4 cut(s)	826, 942, 1262, 1814
BsmI	GAATGC	1 cut(s)	2076
BsnI	GGCC	9 cut(s)	58, 386, 405, 1195, 1752, 1762, 1846, 2271, 2612
Bsp1286I	GDGCHC	6 cut(s)	141, 242, 699, 743, 763, 2113
Bsp1407I	TGTACA	1 cut(s)	2251
Bsp143I	GATC	4 cut(s)	466, 784, 1445, 2593
Bsp1720I	GCTNAGC	1 cut(s)	1991
Bsp19I	CCATGG	2 cut(s)	234, 627
BspANI	GGCC	9 cut(s)	58, 386, 405, 1195, 1752, 1762, 1846, 2271, 2612
BspCNI	CTCAG	4 cut(s)	1048, 1717, 2274, 2389
BspFNI	CGCG	3 cut(s)	46, 144, 441
BspMAI	CTGCAG	4 cut(s)	1067, 1554, 1954, 2629
BspPI	GGATC	1 cut(s)	1453
BspT107I	GGYRCC	4 cut(s)	206, 623, 1664, 2525
BspTI	CTTAAG	1 cut(s)	2614
BsrDI	GCAATG	1 cut(s)	1268
BsrGI	TGTACA	1 cut(s)	2251
BsrI	ACTGG	3 cut(s)	708, 798, 1252
BssECI	CCNNGG	6 cut(s)	234, 308, 387, 627, 1338, 1996
BssMI	GATC	4 cut(s)	466, 784, 1445, 2593
BssNAI	GTATAC	1 cut(s)	1717
BssNI	GRCGYC	3 cut(s)	207, 219, 2359
BssSI	CACGAG	2 cut(s)	1869, 2442
BssT1I	CCWWGG	5 cut(s)	234, 308, 387, 627, 1996
Bst1107I	GTATAC	1 cut(s)	1717
Bst2BI	CACGAG	2 cut(s)	1869, 2442
Bst2UI	CCWGG	4 cut(s)	1053, 1339, 1737, 2076
Bst4CI	ACNGT	3 cut(s)	723, 971, 2174
Bst6I	CTCTTC	6 cut(s)	708, 1285, 1455, 1711, 1760, 2290
BstACI	GRCGYC	3 cut(s)	207, 219, 2359
BstAFI	CTTAAG	1 cut(s)	2614
BstAPI	GCANNNNNTGC	3 cut(s)	1605, 1626, 2018
BstAUI	TGTACA	1 cut(s)	2251
BstBAI	YACGTR	1 cut(s)	1769
BstDEI	CTNAG	7 cut(s)	419, 532, 1035, 1725, 1991, 2261, 2397
BstDSI	CCRYGG	2 cut(s)	234, 627
BstENI	CCTNNNNNAGG	2 cut(s)	286, 752
BstF5I	GGATG	4 cut(s)	180, 264, 823, 2254
BstFNI	CGCG	3 cut(s)	46, 144, 441
BstH2I	RGCGCY	2 cut(s)	210, 904
BstHHI	GCGC	3 cut(s)	146, 209, 903
BstKTI	GATC	4 cut(s)	469, 787, 1448, 2596
BstMAI	GTCTC	3 cut(s)	646, 800, 1914
BstMBI	GATC	4 cut(s)	466, 784, 1445, 2593
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	4 cut(s)	1053, 1339, 1737, 2076
BstNSI	RCATGY	7 cut(s)	347, 1327, 1468, 1599, 1629, 1684, 1778
BstSCI	CCNGG	4 cut(s)	1051, 1337, 1735, 2074
BstSFI	CTRYAG	4 cut(s)	1063, 1550, 1950, 2625
BstSLI	GKGCMC	2 cut(s)	743, 2113
BstUI	CGCG	3 cut(s)	46, 144, 441
BstV2I	GAAGAC	1 cut(s)	1369
BstX2I	RGATCY	2 cut(s)	1445, 2593
BstXI	CCANNNNNNTGG	3 cut(s)	1308, 2147, 2188
BstYI	RGATCY	2 cut(s)	1445, 2593
BstZ17I	GTATAC	1 cut(s)	1717
BsuI	GTATCC	3 cut(s)	696, 1049, 1667
BsuRI	GGCC	9 cut(s)	58, 386, 405, 1195, 1752, 1762, 1846, 2271, 2612
BtgI	CCRYGG	2 cut(s)	234, 627
BtgZI	GCGATG	1 cut(s)	2280
BtrI	CACGTC	1 cut(s)	1814
BtsCI	GGATG	4 cut(s)	180, 264, 823, 2254
BtsI	GCAGTG	2 cut(s)	1947, 2634
BtsIMutI	CAGTG	5 cut(s)	492, 715, 1722, 1947, 2634
CfoI	GCGC	3 cut(s)	146, 209, 903
Cfr13I	GGNCC	8 cut(s)	56, 305, 1076, 1193, 1249, 1784, 2347, 2610
CseI	GACGC	2 cut(s)	52, 2367
Csp6I	GTAC	4 cut(s)	394, 1665, 1766, 2252
CviQI	GTAC	4 cut(s)	394, 1665, 1766, 2252
DdeI	CTNAG	7 cut(s)	419, 532, 1035, 1725, 1991, 2261, 2397
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	4 cut(s)	468, 786, 1447, 2595
DpnII	GATC	4 cut(s)	466, 784, 1445, 2593
DraI	TTTAAA	1 cut(s)	1224
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	403, 2269
Eam1104I	CTCTTC	6 cut(s)	708, 1285, 1455, 1711, 1760, 2290
EarI	CTCTTC	6 cut(s)	708, 1285, 1455, 1711, 1760, 2290
Ecl136II	GAGCTC	2 cut(s)	139, 697
Eco130I	CCWWGG	5 cut(s)	234, 308, 387, 627, 1996
Eco147I	AGGCCT	1 cut(s)	1762
Eco24I	GRGCYC	3 cut(s)	141, 242, 699
Eco47I	GGWCC	5 cut(s)	305, 1076, 1249, 1784, 2347
Eco53kI	GAGCTC	2 cut(s)	139, 697
Eco57I	CTGAAG	4 cut(s)	271, 455, 1741, 2271
EcoICRI	GAGCTC	2 cut(s)	139, 697
EcoNI	CCTNNNNNAGG	2 cut(s)	286, 752
EcoO109I	RGGNCCY	4 cut(s)	1076, 1784, 2347, 2610
EcoRII	CCWGG	4 cut(s)	1051, 1337, 1735, 2074
EcoT14I	CCWWGG	5 cut(s)	234, 308, 387, 627, 1996
EcoT22I	ATGCAT	1 cut(s)	1423
EcoT38I	GRGCYC	3 cut(s)	141, 242, 699
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
ErhI	CCWWGG	5 cut(s)	234, 308, 387, 627, 1996
FalI	AAGNNNNNCTT	6 cut(s)	580, 612, 630, 662, 1377, 1409
FaqI	GGGAC	4 cut(s)	826, 942, 1262, 1814
FauI	CCCGC	2 cut(s)	281, 2468
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	1716
FokI	GGATG	4 cut(s)	167, 251, 830, 2261
FriOI	GRGCYC	3 cut(s)	141, 242, 699
FspBI	CTAG	2 cut(s)	1935, 2103
GlaI	GCGC	3 cut(s)	145, 208, 902
GsaI	CCCAGC	3 cut(s)	604, 1835, 2557
GsuI	CTGGAG	2 cut(s)	1719, 1731
HaeII	RGCGCY	2 cut(s)	210, 904
HaeIII	GGCC	9 cut(s)	58, 386, 405, 1195, 1752, 1762, 1846, 2271, 2612
HapII	CCGG	2 cut(s)	204, 1671
HgaI	GACGC	2 cut(s)	52, 2367
HhaI	GCGC	3 cut(s)	146, 209, 903
Hin1I	GRCGYC	3 cut(s)	207, 219, 2359
Hin6I	GCGC	3 cut(s)	144, 207, 901
HinP1I	GCGC	3 cut(s)	144, 207, 901
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	9 cut(s)	76, 830, 853, 887, 1727, 1925, 2129, 2259, 2438
HpaII	CCGG	2 cut(s)	204, 1671
HphI	GGTGA	3 cut(s)	154, 676, 1751
Hpy166II	GTNNAC	5 cut(s)	741, 979, 1717, 2111, 2254
Hpy188III	TCNNGA	9 cut(s)	184, 289, 464, 473, 700, 1577, 1710, 1962, 2444
Hpy8I	GTNNAC	5 cut(s)	741, 979, 1717, 2111, 2254
Hpy99I	CGWCG	3 cut(s)	46, 221, 2391
HpyAV	CCTTC	9 cut(s)	185, 220, 959, 1089, 1199, 1433, 1736, 2311, 2542
HpyCH4III	ACNGT	3 cut(s)	723, 971, 2174
HpyCH4IV	ACGT	6 cut(s)	219, 338, 668, 1768, 1813, 2389
HpyF3I	CTNAG	7 cut(s)	419, 532, 1035, 1725, 1991, 2261, 2397
HpySE526I	ACGT	6 cut(s)	219, 338, 668, 1768, 1813, 2389
Hsp92I	GRCGYC	3 cut(s)	207, 219, 2359
HspAI	GCGC	3 cut(s)	144, 207, 901
KasI	GGCGCC	1 cut(s)	206
KpnI	GGTACC	1 cut(s)	1668
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	466, 784, 1445, 2593
LmnI	GCTCC	5 cut(s)	144, 245, 331, 1738, 2548
LweI	GCATC	4 cut(s)	808, 1099, 1408, 1545
MaeI	CTAG	2 cut(s)	1935, 2103
MaeII	ACGT	6 cut(s)	219, 338, 668, 1768, 1813, 2389
MaeIII	GTNAC	7 cut(s)	334, 339, 944, 1700, 2003, 2210, 2452
MalI	GATC	4 cut(s)	468, 786, 1447, 2595
MboI	GATC	4 cut(s)	466, 784, 1445, 2593
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	1445, 2593
MhlI	GDGCHC	6 cut(s)	141, 242, 699, 743, 763, 2113
MlsI	TGGCCA	2 cut(s)	405, 2271
MluCI	AATT	9 cut(s)	375, 839, 893, 1042, 1113, 1581, 1643, 1897, 2240
MluNI	TGGCCA	2 cut(s)	405, 2271
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	4 cut(s)	896, 1736, 2138, 2253
MmeI	TCCRAC	5 cut(s)	138, 240, 864, 1132, 1874
Mox20I	TGGCCA	2 cut(s)	405, 2271
Mph1103I	ATGCAT	1 cut(s)	1423
MscI	TGGCCA	2 cut(s)	405, 2271
MseI	TTAA	9 cut(s)	363, 842, 905, 1089, 1223, 1371, 2207, 2337, 2615
MslI	CAYNNNNRTG	2 cut(s)	348, 2090
Msp20I	TGGCCA	2 cut(s)	405, 2271
MspA1I	CMGCKG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	2614
MspI	CCGG	2 cut(s)	204, 1671
MspR9I	CCNGG	4 cut(s)	1053, 1339, 1737, 2076
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	2076
MvaI	CCWGG	4 cut(s)	1053, 1339, 1737, 2076
MvnI	CGCG	3 cut(s)	46, 144, 441
NarI	GGCGCC	1 cut(s)	207
NcoI	CCATGG	2 cut(s)	234, 627
NdeII	GATC	4 cut(s)	466, 784, 1445, 2593
NmuCI	GTSAC	2 cut(s)	334, 2210
NsiI	ATGCAT	1 cut(s)	1423
NspI	RCATGY	7 cut(s)	347, 1327, 1468, 1599, 1629, 1684, 1778
PaeI	GCATGC	2 cut(s)	1327, 1629
PceI	AGGCCT	1 cut(s)	1762
PciI	ACATGT	2 cut(s)	343, 1464
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PctI	GAATGC	1 cut(s)	2076
PfeI	GAWTC	5 cut(s)	76, 830, 853, 1925, 2438
PleI	GAGTC	4 cut(s)	895, 1735, 2137, 2253
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	4 cut(s)	895, 1735, 2137, 2253
Ppu21I	YACGTR	1 cut(s)	1769
PpuMI	RGGWCCY	3 cut(s)	1076, 1784, 2347
PscI	ACATGT	2 cut(s)	343, 1464
PshBI	ATTAAT	1 cut(s)	363
Psp124BI	GAGCTC	2 cut(s)	141, 699
Psp1406I	AACGTT	1 cut(s)	668
Psp5II	RGGWCCY	3 cut(s)	1076, 1784, 2347
Psp6I	CCWGG	4 cut(s)	1051, 1337, 1735, 2074
PspFI	CCCAGC	3 cut(s)	600, 1831, 2553
PspGI	CCWGG	4 cut(s)	1051, 1337, 1735, 2074
PspPI	GGNCC	8 cut(s)	56, 305, 1076, 1193, 1249, 1784, 2347, 2610
PspPPI	RGGWCCY	3 cut(s)	1076, 1784, 2347
PstI	CTGCAG	4 cut(s)	1067, 1554, 1954, 2629
PsuI	RGATCY	2 cut(s)	1445, 2593
RsaI	GTAC	4 cut(s)	395, 1666, 1767, 2253
RsaNI	GTAC	4 cut(s)	394, 1665, 1766, 2252
RseI	CAYNNNNRTG	2 cut(s)	348, 2090
SacI	GAGCTC	2 cut(s)	141, 699
SaqAI	TTAA	9 cut(s)	363, 842, 905, 1089, 1223, 1371, 2207, 2337, 2615
Sau3AI	GATC	4 cut(s)	466, 784, 1445, 2593
Sau96I	GGNCC	8 cut(s)	56, 305, 1076, 1193, 1249, 1784, 2347, 2610
SchI	GAGTC	4 cut(s)	896, 1736, 2138, 2253
ScrFI	CCNGG	4 cut(s)	1053, 1339, 1737, 2076
SduI	GDGCHC	6 cut(s)	141, 242, 699, 743, 763, 2113
SfaNI	GCATC	4 cut(s)	808, 1099, 1408, 1545
SfcI	CTRYAG	4 cut(s)	1063, 1550, 1950, 2625
SfoI	GGCGCC	1 cut(s)	208
SinI	GGWCC	5 cut(s)	305, 1076, 1249, 1784, 2347
SmiI	ATTTAAAT	1 cut(s)	1224
SmiMI	CAYNNNNRTG	2 cut(s)	348, 2090
SmlI	CTYRAG	3 cut(s)	1502, 2352, 2614
SmoI	CTYRAG	3 cut(s)	1502, 2352, 2614
SphI	GCATGC	2 cut(s)	1327, 1629
Sse9I	AATT	9 cut(s)	375, 839, 893, 1042, 1113, 1581, 1643, 1897, 2240
SseBI	AGGCCT	1 cut(s)	1762
SspDI	GGCGCC	1 cut(s)	206
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	1935, 2103
SstI	GAGCTC	2 cut(s)	141, 699
StuI	AGGCCT	1 cut(s)	1762
StyD4I	CCNGG	4 cut(s)	1051, 1337, 1735, 2074
StyI	CCWWGG	5 cut(s)	234, 308, 387, 627, 1996
SwaI	ATTTAAAT	1 cut(s)	1224
TaaI	ACNGT	3 cut(s)	723, 971, 2174
TaiI	ACGT	6 cut(s)	222, 341, 671, 1771, 1816, 2392
TaqI	TCGA	2 cut(s)	150, 2436
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	9 cut(s)	375, 839, 893, 1042, 1113, 1581, 1643, 1897, 2240
TatI	WGTACW	1 cut(s)	2251
TauI	GCSGC	3 cut(s)	61, 135, 1841
TfiI	GAWTC	5 cut(s)	76, 830, 853, 1925, 2438
Tru1I	TTAA	9 cut(s)	363, 842, 905, 1089, 1223, 1371, 2207, 2337, 2615
Tru9I	TTAA	9 cut(s)	363, 842, 905, 1089, 1223, 1371, 2207, 2337, 2615
TscAI	CASTG	5 cut(s)	499, 715, 1729, 1954, 2634
TseFI	GTSAC	2 cut(s)	334, 2210
Tsp45I	GTSAC	2 cut(s)	334, 2210
TspDTI	ATGAA	9 cut(s)	80, 290, 490, 1071, 1113, 1218, 1289, 2210, 2598
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	5 cut(s)	499, 715, 1729, 1954, 2634
Vha464I	CTTAAG	1 cut(s)	2614
VneI	GTGCAC	2 cut(s)	739, 2109
VpaK11BI	GGWCC	5 cut(s)	305, 1076, 1249, 1784, 2347
VspI	ATTAAT	1 cut(s)	363
XagI	CCTNNNNNAGG	2 cut(s)	286, 752
XapI	RAATTY	1 cut(s)	1042
XceI	RCATGY	7 cut(s)	347, 1327, 1468, 1599, 1629, 1684, 1778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1839
XmiI	GTMKAC	1 cut(s)	1716
XspI	CTAG	2 cut(s)	1935, 2103
ZraI	GACGTC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.