Broad-Complex, Tramtrack and Bric a brac
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15840 AT4G15840 |
| fragaria_vesca | FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 |
| malus_domestica | MD08G1066800.v1.1 MD13G1167900.v1.1 |
| prunus_persica | Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 |
| pyrus_communis | pycom13g14360 |
| rosa_chinensis | RchiOBHm_Chr4g0422381 |
| rosa_laevigata | RLG00000007614 |
| rosa_multiflora | Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00364500 |
| rosa_rugosa | Rorug04G0179600 Rorug04G0179700 |
| rosa_samantha | Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200 |
| rosa_wichuraiana | Rw4G020670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 950 |
| AccB1I | GGYRCC | 2 cut(s) | 950, 1811 |
| AccI | GTMKAC | 1 cut(s) | 1002 |
| AciI | CCGC | 4 cut(s) | 419, 1125, 1513, 1747 |
| AclWI | GGATC | 1 cut(s) | 739 |
| AcoI | YGGCCR | 1 cut(s) | 1555 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcuI | CTGAAG | 2 cut(s) | 1027, 1557 |
| AcyI | GRCGYC | 1 cut(s) | 1645 |
| AfaI | GTAC | 3 cut(s) | 952, 1053, 1539 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 1028, 1079, 1519 |
| AflII | CTTAAG | 1 cut(s) | 1900 |
| AflIII | ACRYGT | 2 cut(s) | 750, 1054 |
| AgsI | TTSAA | 7 cut(s) | 39, 285, 570, 725, 772, 863, 1889 |
| AjiI | CACGTC | 1 cut(s) | 1100 |
| AjnI | CCWGG | 4 cut(s) | 337, 623, 1021, 1360 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 414, 446, 669, 701 |
| Alw21I | GWGCWC | 3 cut(s) | 29, 49, 1399 |
| Alw26I | GTCTC | 2 cut(s) | 86, 1200 |
| Alw44I | GTGCAC | 2 cut(s) | 25, 1395 |
| AlwI | GGATC | 1 cut(s) | 739 |
| AoxI | GGCC | 6 cut(s) | 479, 1036, 1046, 1130, 1555, 1896 |
| ApaLI | GTGCAC | 2 cut(s) | 25, 1395 |
| ApeKI | GCWGC | 6 cut(s) | 351, 835, 1121, 1298, 1910, 1921 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| Asp718I | GGTACC | 1 cut(s) | 950 |
| AspLEI | GCGC | 2 cut(s) | 189, 875 |
| AspS9I | GGNCC | 6 cut(s) | 362, 479, 535, 1070, 1633, 1896 |
| AsuHPI | GGTGA | 1 cut(s) | 1037 |
| AvaII | GGWCC | 4 cut(s) | 362, 535, 1070, 1633 |
| BaeGI | GKGCMC | 2 cut(s) | 29, 1399 |
| BalI | TGGCCA | 1 cut(s) | 1557 |
| BanI | GGYRCC | 2 cut(s) | 950, 1811 |
| BauI | CACGAG | 2 cut(s) | 1155, 1728 |
| BbsI | GAAGAC | 1 cut(s) | 655 |
| Bbv12I | GWGCWC | 3 cut(s) | 29, 49, 1399 |
| BbvI | GCAGC | 5 cut(s) | 363, 822, 1133, 1310, 1897 |
| BccI | CCATC | 8 cut(s) | 490, 818, 1073, 1247, 1333, 1402, 1547, 1774 |
| BciT130I | CCWGG | 4 cut(s) | 339, 625, 1023, 1362 |
| BciVI | GTATCC | 2 cut(s) | 335, 953 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BcoDI | GTCTC | 2 cut(s) | 86, 1200 |
| BfaI | CTAG | 2 cut(s) | 1221, 1389 |
| BfmI | CTRYAG | 3 cut(s) | 836, 1236, 1911 |
| BfoI | RGCGCY | 2 cut(s) | 190, 876 |
| BfrI | CTTAAG | 1 cut(s) | 1900 |
| BfuI | GTATCC | 2 cut(s) | 335, 953 |
| BglII | AGATCT | 1 cut(s) | 1879 |
| BisI | GCNGC | 7 cut(s) | 352, 836, 1122, 1125, 1299, 1911, 1922 |
| BlpI | GCTNAGC | 1 cut(s) | 1277 |
| BlsI | GCNGC | 7 cut(s) | 353, 837, 1123, 1126, 1300, 1912, 1923 |
| Bme1390I | CCNGG | 4 cut(s) | 339, 625, 1023, 1362 |
| Bme18I | GGWCC | 4 cut(s) | 362, 535, 1070, 1633 |
| BmgBI | CACGTC | 1 cut(s) | 1100 |
| BmgT120I | GGNCC | 6 cut(s) | 362, 479, 535, 1070, 1633, 1896 |
| BmiI | GGNNCC | 8 cut(s) | 480, 536, 952, 1071, 1105, 1635, 1813, 1897 |
| BmrFI | CCNGG | 4 cut(s) | 339, 625, 1023, 1362 |
| BmsI | GCATC | 4 cut(s) | 94, 385, 694, 831 |
| BpiI | GAAGAC | 1 cut(s) | 655 |
| BpmI | CTGGAG | 2 cut(s) | 1005, 1017 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1277 |
| BpuEI | CTTGAG | 2 cut(s) | 809, 1623 |
| BsaAI | YACGTR | 1 cut(s) | 1055 |
| BsaHI | GRCGYC | 1 cut(s) | 1645 |
| BsaJI | CCNNGG | 2 cut(s) | 624, 1282 |
| BsaWI | WCCGGW | 1 cut(s) | 956 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 1028, 1079, 1519 |
| Bse1I | ACTGG | 2 cut(s) | 84, 538 |
| Bse3DI | GCAATG | 1 cut(s) | 554 |
| BseBI | CCWGG | 4 cut(s) | 339, 625, 1023, 1362 |
| BseDI | CCNNGG | 2 cut(s) | 624, 1282 |
| BseGI | GGATG | 2 cut(s) | 109, 1540 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 1028, 1079, 1519 |
| BseMI | GCAATG | 1 cut(s) | 554 |
| BseMII | CTCAG | 4 cut(s) | 335, 1002, 1561, 1674 |
| BseNI | ACTGG | 2 cut(s) | 84, 538 |
| BseRI | GAGGAG | 1 cut(s) | 606 |
| BseSI | GKGCMC | 2 cut(s) | 29, 1399 |
| BseXI | GCAGC | 5 cut(s) | 363, 822, 1133, 1310, 1897 |
| BseYI | CCCAGC | 2 cut(s) | 1117, 1839 |
| BsgI | GTGCAG | 2 cut(s) | 1424, 1730 |
| BshFI | GGCC | 6 cut(s) | 481, 1038, 1048, 1132, 1557, 1898 |
| BshNI | GGYRCC | 2 cut(s) | 950, 1811 |
| BsiHKAI | GWGCWC | 3 cut(s) | 29, 49, 1399 |
| BsiSI | CCGG | 1 cut(s) | 957 |
| BslFI | GGGAC | 4 cut(s) | 112, 228, 548, 1100 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 1028, 1079, 1519 |
| BsmAI | GTCTC | 2 cut(s) | 86, 1200 |
| BsmFI | GGGAC | 4 cut(s) | 112, 228, 548, 1100 |
| BsmI | GAATGC | 1 cut(s) | 1362 |
| BsnI | GGCC | 6 cut(s) | 481, 1038, 1048, 1132, 1557, 1898 |
| Bsp1286I | GDGCHC | 3 cut(s) | 29, 49, 1399 |
| Bsp1407I | TGTACA | 1 cut(s) | 1537 |
| Bsp143I | GATC | 3 cut(s) | 70, 731, 1879 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1277 |
| BspACI | CCGC | 4 cut(s) | 419, 1125, 1513, 1747 |
| BspANI | GGCC | 6 cut(s) | 481, 1038, 1048, 1132, 1557, 1898 |
| BspCNI | CTCAG | 4 cut(s) | 334, 1003, 1560, 1675 |
| BspLI | GGNNCC | 8 cut(s) | 480, 536, 952, 1071, 1105, 1635, 1813, 1897 |
| BspMAI | CTGCAG | 3 cut(s) | 840, 1240, 1915 |
| BspPI | GGATC | 1 cut(s) | 739 |
| BspT107I | GGYRCC | 2 cut(s) | 950, 1811 |
| BspTI | CTTAAG | 1 cut(s) | 1900 |
| BsrDI | GCAATG | 1 cut(s) | 554 |
| BsrGI | TGTACA | 1 cut(s) | 1537 |
| BsrI | ACTGG | 2 cut(s) | 84, 538 |
| BssECI | CCNNGG | 2 cut(s) | 624, 1282 |
| BssMI | GATC | 3 cut(s) | 70, 731, 1879 |
| BssNAI | GTATAC | 1 cut(s) | 1003 |
| BssNI | GRCGYC | 1 cut(s) | 1645 |
| BssSI | CACGAG | 2 cut(s) | 1155, 1728 |
| BssT1I | CCWWGG | 1 cut(s) | 1282 |
| Bst1107I | GTATAC | 1 cut(s) | 1003 |
| Bst2BI | CACGAG | 2 cut(s) | 1155, 1728 |
| Bst2UI | CCWGG | 4 cut(s) | 339, 625, 1023, 1362 |
| Bst4CI | ACNGT | 2 cut(s) | 257, 1460 |
| Bst6I | CTCTTC | 5 cut(s) | 571, 741, 997, 1046, 1576 |
| BstACI | GRCGYC | 1 cut(s) | 1645 |
| BstAFI | CTTAAG | 1 cut(s) | 1900 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 891, 912, 1304 |
| BstAUI | TGTACA | 1 cut(s) | 1537 |
| BstBAI | YACGTR | 1 cut(s) | 1055 |
| BstC8I | GCNNGC | 8 cut(s) | 18, 249, 611, 913, 1086, 1190, 1747, 1847 |
| BstDEI | CTNAG | 5 cut(s) | 321, 1011, 1277, 1547, 1683 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 38 |
| BstF5I | GGATG | 2 cut(s) | 109, 1540 |
| BstH2I | RGCGCY | 2 cut(s) | 190, 876 |
| BstHHI | GCGC | 2 cut(s) | 189, 875 |
| BstKTI | GATC | 3 cut(s) | 73, 734, 1882 |
| BstMAI | GTCTC | 2 cut(s) | 86, 1200 |
| BstMBI | GATC | 3 cut(s) | 70, 731, 1879 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 841, 891, 912, 1304 |
| BstNI | CCWGG | 4 cut(s) | 339, 625, 1023, 1362 |
| BstNSI | RCATGY | 6 cut(s) | 613, 754, 885, 915, 970, 1064 |
| BstSCI | CCNGG | 4 cut(s) | 337, 623, 1021, 1360 |
| BstSFI | CTRYAG | 3 cut(s) | 836, 1236, 1911 |
| BstSLI | GKGCMC | 2 cut(s) | 29, 1399 |
| BstV1I | GCAGC | 5 cut(s) | 363, 822, 1133, 1310, 1897 |
| BstV2I | GAAGAC | 1 cut(s) | 655 |
| BstX2I | RGATCY | 2 cut(s) | 731, 1879 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 594, 1433, 1474 |
| BstYI | RGATCY | 2 cut(s) | 731, 1879 |
| BstZ17I | GTATAC | 1 cut(s) | 1003 |
| BsuI | GTATCC | 2 cut(s) | 335, 953 |
| BsuRI | GGCC | 6 cut(s) | 481, 1038, 1048, 1132, 1557, 1898 |
| BtrI | CACGTC | 1 cut(s) | 1100 |
| BtsCI | GGATG | 2 cut(s) | 109, 1540 |
| BtsI | GCAGTG | 2 cut(s) | 1233, 1920 |
| BtsIMutI | CAGTG | 5 cut(s) | 1008, 1233, 1383, 1555, 1920 |
| Cac8I | GCNNGC | 8 cut(s) | 18, 249, 611, 913, 1086, 1190, 1747, 1847 |
| CfoI | GCGC | 2 cut(s) | 189, 875 |
| Cfr13I | GGNCC | 6 cut(s) | 362, 479, 535, 1070, 1633, 1896 |
| CseI | GACGC | 1 cut(s) | 1653 |
| Csp6I | GTAC | 3 cut(s) | 951, 1052, 1538 |
| CviQI | GTAC | 3 cut(s) | 951, 1052, 1538 |
| DdeI | CTNAG | 5 cut(s) | 321, 1011, 1277, 1547, 1683 |
| DpnI | GATC | 3 cut(s) | 72, 733, 1881 |
| DpnII | GATC | 3 cut(s) | 70, 731, 1879 |
| DraI | TTTAAA | 2 cut(s) | 510, 1494 |
| EaeI | YGGCCR | 1 cut(s) | 1555 |
| Eam1104I | CTCTTC | 5 cut(s) | 571, 741, 997, 1046, 1576 |
| EarI | CTCTTC | 5 cut(s) | 571, 741, 997, 1046, 1576 |
| Eco130I | CCWWGG | 1 cut(s) | 1282 |
| Eco147I | AGGCCT | 1 cut(s) | 1048 |
| Eco47I | GGWCC | 4 cut(s) | 362, 535, 1070, 1633 |
| Eco57I | CTGAAG | 2 cut(s) | 1027, 1557 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 38 |
| EcoO109I | RGGNCCY | 4 cut(s) | 362, 1070, 1633, 1896 |
| EcoRII | CCWGG | 4 cut(s) | 337, 623, 1021, 1360 |
| EcoT14I | CCWWGG | 1 cut(s) | 1282 |
| EcoT22I | ATGCAT | 1 cut(s) | 709 |
| ErhI | CCWWGG | 1 cut(s) | 1282 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 663, 695 |
| FaqI | GGGAC | 4 cut(s) | 112, 228, 548, 1100 |
| FauI | CCCGC | 1 cut(s) | 1754 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| FblI | GTMKAC | 1 cut(s) | 1002 |
| Fnu4HI | GCNGC | 7 cut(s) | 352, 836, 1122, 1125, 1299, 1911, 1922 |
| FokI | GGATG | 2 cut(s) | 116, 1547 |
| Fsp4HI | GCNGC | 7 cut(s) | 352, 836, 1122, 1125, 1299, 1911, 1922 |
| FspBI | CTAG | 2 cut(s) | 1221, 1389 |
| GlaI | GCGC | 2 cut(s) | 188, 874 |
| GluI | GCNGC | 7 cut(s) | 352, 836, 1122, 1125, 1299, 1911, 1922 |
| GsaI | CCCAGC | 2 cut(s) | 1121, 1843 |
| GsuI | CTGGAG | 2 cut(s) | 1005, 1017 |
| HaeII | RGCGCY | 2 cut(s) | 190, 876 |
| HaeIII | GGCC | 6 cut(s) | 481, 1038, 1048, 1132, 1557, 1898 |
| HapII | CCGG | 1 cut(s) | 957 |
| HgaI | GACGC | 1 cut(s) | 1653 |
| HhaI | GCGC | 2 cut(s) | 189, 875 |
| Hin1I | GRCGYC | 1 cut(s) | 1645 |
| Hin6I | GCGC | 2 cut(s) | 187, 873 |
| HinP1I | GCGC | 2 cut(s) | 187, 873 |
| HincII | GTYRAC | 1 cut(s) | 265 |
| HindII | GTYRAC | 1 cut(s) | 265 |
| HinfI | GANTC | 8 cut(s) | 116, 139, 173, 1013, 1211, 1415, 1545, 1724 |
| HpaII | CCGG | 1 cut(s) | 957 |
| HphI | GGTGA | 1 cut(s) | 1037 |
| Hpy166II | GTNNAC | 5 cut(s) | 27, 265, 1003, 1397, 1540 |
| Hpy188III | TCNNGA | 4 cut(s) | 863, 996, 1248, 1730 |
| Hpy8I | GTNNAC | 5 cut(s) | 27, 265, 1003, 1397, 1540 |
| Hpy99I | CGWCG | 1 cut(s) | 1677 |
| HpyAV | CCTTC | 7 cut(s) | 245, 375, 485, 719, 1022, 1597, 1828 |
| HpyCH4III | ACNGT | 2 cut(s) | 257, 1460 |
| HpyCH4IV | ACGT | 3 cut(s) | 1054, 1099, 1675 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 841, 891, 912, 1304 |
| HpyF3I | CTNAG | 5 cut(s) | 321, 1011, 1277, 1547, 1683 |
| HpySE526I | ACGT | 3 cut(s) | 1054, 1099, 1675 |
| Hsp92I | GRCGYC | 1 cut(s) | 1645 |
| HspAI | GCGC | 2 cut(s) | 187, 873 |
| KpnI | GGTACC | 1 cut(s) | 954 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| Kzo9I | GATC | 3 cut(s) | 70, 731, 1879 |
| LmnI | GCTCC | 2 cut(s) | 1024, 1834 |
| Lsp1109I | GCAGC | 5 cut(s) | 363, 822, 1133, 1310, 1897 |
| LweI | GCATC | 4 cut(s) | 94, 385, 694, 831 |
| MaeI | CTAG | 2 cut(s) | 1221, 1389 |
| MaeII | ACGT | 3 cut(s) | 1054, 1099, 1675 |
| MaeIII | GTNAC | 4 cut(s) | 230, 986, 1289, 1738 |
| MalI | GATC | 3 cut(s) | 72, 733, 1881 |
| MboI | GATC | 3 cut(s) | 70, 731, 1879 |
| MflI | RGATCY | 2 cut(s) | 731, 1879 |
| MhlI | GDGCHC | 3 cut(s) | 29, 49, 1399 |
| MlsI | TGGCCA | 1 cut(s) | 1557 |
| MluCI | AATT | 7 cut(s) | 179, 328, 399, 867, 929, 1183, 1526 |
| MluNI | TGGCCA | 1 cut(s) | 1557 |
| MlyI | GAGTC | 4 cut(s) | 182, 1022, 1424, 1539 |
| MmeI | TCCRAC | 3 cut(s) | 150, 418, 1160 |
| Mox20I | TGGCCA | 1 cut(s) | 1557 |
| Mph1103I | ATGCAT | 1 cut(s) | 709 |
| MscI | TGGCCA | 1 cut(s) | 1557 |
| MseI | TTAA | 7 cut(s) | 191, 375, 509, 657, 1493, 1623, 1901 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1376 |
| Msp20I | TGGCCA | 1 cut(s) | 1557 |
| MspCI | CTTAAG | 1 cut(s) | 1900 |
| MspI | CCGG | 1 cut(s) | 957 |
| MspR9I | CCNGG | 4 cut(s) | 339, 625, 1023, 1362 |
| Mva1269I | GAATGC | 1 cut(s) | 1362 |
| MvaI | CCWGG | 4 cut(s) | 339, 625, 1023, 1362 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 841, 891, 912, 1304 |
| NdeII | GATC | 3 cut(s) | 70, 731, 1879 |
| NlaIV | GGNNCC | 8 cut(s) | 480, 536, 952, 1071, 1105, 1635, 1813, 1897 |
| NsiI | ATGCAT | 1 cut(s) | 709 |
| NspI | RCATGY | 6 cut(s) | 613, 754, 885, 915, 970, 1064 |
| PaeI | GCATGC | 2 cut(s) | 613, 915 |
| PceI | AGGCCT | 1 cut(s) | 1048 |
| PciI | ACATGT | 1 cut(s) | 750 |
| PctI | GAATGC | 1 cut(s) | 1362 |
| PfeI | GAWTC | 4 cut(s) | 116, 139, 1211, 1724 |
| PkrI | GCNGC | 7 cut(s) | 353, 837, 1123, 1126, 1300, 1912, 1923 |
| PleI | GAGTC | 4 cut(s) | 181, 1021, 1423, 1539 |
| PpsI | GAGTC | 4 cut(s) | 181, 1021, 1423, 1539 |
| Ppu21I | YACGTR | 1 cut(s) | 1055 |
| PpuMI | RGGWCCY | 3 cut(s) | 362, 1070, 1633 |
| PscI | ACATGT | 1 cut(s) | 750 |
| Psp5II | RGGWCCY | 3 cut(s) | 362, 1070, 1633 |
| Psp6I | CCWGG | 4 cut(s) | 337, 623, 1021, 1360 |
| PspFI | CCCAGC | 2 cut(s) | 1117, 1839 |
| PspGI | CCWGG | 4 cut(s) | 337, 623, 1021, 1360 |
| PspN4I | GGNNCC | 8 cut(s) | 480, 536, 952, 1071, 1105, 1635, 1813, 1897 |
| PspPI | GGNCC | 6 cut(s) | 362, 479, 535, 1070, 1633, 1896 |
| PspPPI | RGGWCCY | 3 cut(s) | 362, 1070, 1633 |
| PstI | CTGCAG | 3 cut(s) | 840, 1240, 1915 |
| PsuI | RGATCY | 2 cut(s) | 731, 1879 |
| RsaI | GTAC | 3 cut(s) | 952, 1053, 1539 |
| RsaNI | GTAC | 3 cut(s) | 951, 1052, 1538 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1376 |
| SaqAI | TTAA | 7 cut(s) | 191, 375, 509, 657, 1493, 1623, 1901 |
| SatI | GCNGC | 7 cut(s) | 352, 836, 1122, 1125, 1299, 1911, 1922 |
| Sau3AI | GATC | 3 cut(s) | 70, 731, 1879 |
| Sau96I | GGNCC | 6 cut(s) | 362, 479, 535, 1070, 1633, 1896 |
| SchI | GAGTC | 4 cut(s) | 182, 1022, 1424, 1539 |
| ScrFI | CCNGG | 4 cut(s) | 339, 625, 1023, 1362 |
| SduI | GDGCHC | 3 cut(s) | 29, 49, 1399 |
| SfaNI | GCATC | 4 cut(s) | 94, 385, 694, 831 |
| SfcI | CTRYAG | 3 cut(s) | 836, 1236, 1911 |
| SinI | GGWCC | 4 cut(s) | 362, 535, 1070, 1633 |
| SmiI | ATTTAAAT | 1 cut(s) | 510 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1376 |
| SmlI | CTYRAG | 3 cut(s) | 788, 1638, 1900 |
| SmoI | CTYRAG | 3 cut(s) | 788, 1638, 1900 |
| SphI | GCATGC | 2 cut(s) | 613, 915 |
| Sse9I | AATT | 7 cut(s) | 179, 328, 399, 867, 929, 1183, 1526 |
| SseBI | AGGCCT | 1 cut(s) | 1048 |
| SsiI | CCGC | 4 cut(s) | 419, 1125, 1513, 1747 |
| SspMI | CTAG | 2 cut(s) | 1221, 1389 |
| StuI | AGGCCT | 1 cut(s) | 1048 |
| StyD4I | CCNGG | 4 cut(s) | 337, 623, 1021, 1360 |
| StyI | CCWWGG | 1 cut(s) | 1282 |
| SwaI | ATTTAAAT | 1 cut(s) | 510 |
| TaaI | ACNGT | 2 cut(s) | 257, 1460 |
| TaiI | ACGT | 3 cut(s) | 1057, 1102, 1678 |
| TaqI | TCGA | 1 cut(s) | 1722 |
| TasI | AATT | 7 cut(s) | 179, 328, 399, 867, 929, 1183, 1526 |
| TatI | WGTACW | 1 cut(s) | 1537 |
| TauI | GCSGC | 1 cut(s) | 1127 |
| TfiI | GAWTC | 4 cut(s) | 116, 139, 1211, 1724 |
| Tru1I | TTAA | 7 cut(s) | 191, 375, 509, 657, 1493, 1623, 1901 |
| Tru9I | TTAA | 7 cut(s) | 191, 375, 509, 657, 1493, 1623, 1901 |
| TscAI | CASTG | 5 cut(s) | 1015, 1240, 1383, 1555, 1920 |
| TseI | GCWGC | 6 cut(s) | 351, 835, 1121, 1298, 1910, 1921 |
| TspDTI | ATGAA | 7 cut(s) | 17, 357, 399, 504, 575, 1496, 1884 |
| TspGWI | ACGGA | 1 cut(s) | 116 |
| TspRI | CASTG | 5 cut(s) | 1015, 1240, 1383, 1555, 1920 |
| Vha464I | CTTAAG | 1 cut(s) | 1900 |
| VneI | GTGCAC | 2 cut(s) | 25, 1395 |
| VpaK11BI | GGWCC | 4 cut(s) | 362, 535, 1070, 1633 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 38 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XceI | RCATGY | 6 cut(s) | 613, 754, 885, 915, 970, 1064 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1125 |
| XmiI | GTMKAC | 1 cut(s) | 1002 |
| XspI | CTAG | 2 cut(s) | 1221, 1389 |
| Zsp2I | ATGCAT | 1 cut(s) | 709 |