Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

44530251 .. 44535561

Gene Structure 5311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG238200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGGAAGCTAACTACGCTAACAACCACCACCACAACCAAGCGACGCGGTGCTTCGGGCCGCAGATGAAAATGACGATTCAGCCCTCGCAGCAGCAGCAGCAGCACTCCGACAACGACCGCAGCAGCGGCGAGCTCCGCGCCCTCGACTGCAACCTCACCTCCCTCTGCGACCACATCCAGACCGAAGGCTTCAACTCCGGCGCCTTCTCCGACGTCCTCGTCCTCGCCATGGGCTCCACCTACCACCTCCACCGCCTCATCCTCTCCCGCAGCCCCTACTTCAGGAATATGCTTCATGGACCTTGGAAAGAAGCCAACGCTCCCATTGTGACATTACATGTAGATGATAAGAATATTAATGCAGAGGCAATTGCAACGGCCTTGGCGTACTTGTATGGCCACCACCCCAAGCTTAGTGATACCAATGCCTTTCGCGTTCTTGCTGCTGCTTCTTTTCTTGATCTTCAGGATTTATGTGCTATATGCACTGACTTCATTATATCGGAACTGTGGACTTCAAACTTCTTAGCCTATCAGGTGTTTGCGGAGGGGCAAGATTATGGCATACATGGAGAACGGGTAAGAAATGCTTGCTGGGGCTACCTTTGTCAAAGCGGTGCCATGGATTTGAAAGAGGTGCTTCCGAGACTTTCTTCTCAAACGTTGCTTGCATTACTCACCTCTGACGAGCTCTGGGTACCCAGTGAAGAGAAACGGTTTGAGCTGGCATTGTGCACATTCCTTTCAAAGGGTGCTCAATGCAAACAGGAAGATTATGATCATGGAAGTTCCAGTTCGGAGACAGGGACGGATGCACATTCCGATTCCTCTAAATCAAATGGAAAGAATCTGACTGATAGCTTCGCTAATAAAAGGTTGGAGTCTGAATTGGGGCGCTTAACTCTAAAAGATGATTTAGAGGGACATAATACAGCTCGTAACCTTCTGATAGAGCTTGCAGACTGTGTAGTTGACTTCCAAACAGGAGGTTCAAATGCCAAACAGCAAGTGCAACAAGTTGCTTACCCTCAGTCAAATTTTGAGCCAGGATACAACTGCAGCATGGGAGGTCCTTCATCATTTAATACATTTTCAGACATAGATGCAATTAGAACTTCATGTTATGCGGAAATGCCTATTGGTGTTGGAGTAAGTAGATTGGGGGAAAATGGAGGGGCTATGGAGGGGCCATCTGATGAAGGGTCATGCTACCATTTAAATAACAATAGTTGGCTTGGTAGGGACCAGTCAAGGCAATGCTCGTCAATGAACTCTTCAAGTAGTGAGCTAATGCCAAATGATTGGGGAAGATGTAGCATGCCTCCTCTTTCCTGGGGTGGCAGGGTTGTAGGCAGAAGACAGCTTAAAGGTTATGGTAAAGGAGAACTTGGGGTTGGTGGGGAGGAATATGATGCATTTGTAAATATATTTGAAGGAGGATCTCTTCTATACTGCAACATGTCTTTTGAGGCACTTTTGAATGTAAGAAAGCAACTTGAGGAAATGGGGTTTCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTTTGAGCCAGAGAGTTCAAGAAATTGGCGCTGATACATGCAAAAGTTGCTGTCTAACAAGCATAGCATGCAGTTGCAGACAGCAATTTTCGTTCTCACATGGAGGTACCACCGGATACTACATGCAAGAGCATAATCAGAGTAACTCTTCTGGAGTATACATCACTGAGTCTGCTCCAGGTGAAGGAAATGGCCTCTTCAGGCCTGTACGTGTGCATGTCAGGGGTCCTATTGATGGGCTTGCTGGTATTGGACGTGGAACCACATTTGTCCCAGCAGCCGCTTGGCCTCCAACTCGGTTCGTCTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTGCCAGCAGTCTCTTGCTAATGATGATTCAGAGGCTAGAGCTGACCACACTGCAGAGCTGTCAGGAGATGGATTGACAGCTTTGGTTGGGCTAAGCCAAGGAGGTAACAATGCAGCTAATGCTCATGTAGAGCAAACAGAGAGGGGCTATGAGATGGATATGCAAAGCCGAATGCCTGGAACTTCCATGTCAGTGCCAAGTTCTAGTGGTGCACCCGTGCAGATGGTAGAGTCATCAGACCAAGCACTTGGGATTGAGTGGGATAATGCAAACAGTTCTTCCATATCATTGGATATGAAAACACCTTTAAATCACTTCCCTCCATTCCGCTTTGGGTATGTGCTCCTTTCTCTCTGCGTTACAGTTTCTGCAGATACATTAATCTTGCTTCTAGGTCCACTGGTGCTTCCAGAATTTTCACTCTTGAAAAATAGGAATATAAATTCTTTTGAGGTATTTAGGATGCTTTCATATGATCTCCTAGCTCAGAGAGCTCTGTTGATACTCATTATAGGATTGGATTGCGTGTGTAGTACTGTTCGTCTCTGCCCATGTCCTAATCGCATTATAAGATGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

824

Amino Acids

90.26

Weight (kDa)

5.3

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	64 - 168	8.3e-15	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2462
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	1 cut(s)	216
Acc65I	GGTACC	2 cut(s)	697, 1658
AccB1I	GGYRCC	4 cut(s)	200, 617, 697, 1658
AccI	GTMKAC	1 cut(s)	1710
AccII	CGCG	3 cut(s)	46, 138, 435
AclI	AACGTT	1 cut(s)	662
AclWI	GGATC	1 cut(s)	1447
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	3 cut(s)	1036, 2306, 2335
AcuI	CTGAAG	3 cut(s)	265, 449, 1735
AcyI	GRCGYC	2 cut(s)	201, 213
AfaI	GTAC	5 cut(s)	389, 699, 1660, 1761, 2428
AfiI	CCNNNNNNNGG	5 cut(s)	229, 282, 748, 1736, 1787
AflIII	ACRYGT	3 cut(s)	337, 1458, 1762
AjiI	CACGTC	1 cut(s)	1808
AjnI	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
AjuI	GAANNNNNNNTTGG	4 cut(s)	1122, 1154, 1377, 1409
Alw21I	GWGCWC	7 cut(s)	135, 693, 737, 757, 2107, 2238, 2389
Alw26I	GTCTC	4 cut(s)	640, 794, 1908, 2441
Alw44I	GTGCAC	2 cut(s)	733, 2103
AlwI	GGATC	1 cut(s)	1447
AlwNI	CAGNNNCTG	1 cut(s)	2261
AoxI	GGCC	7 cut(s)	56, 378, 397, 1187, 1744, 1754, 1838
ApaLI	GTGCAC	2 cut(s)	733, 2103
ApoI	RAATTY	3 cut(s)	1036, 2306, 2335
AseI	ATTAAT	2 cut(s)	357, 2273
Asp718I	GGTACC	2 cut(s)	697, 1658
AspLEI	GCGC	4 cut(s)	140, 203, 897, 1583
AspS9I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2288, 2469
AsuHPI	GGTGA	3 cut(s)	148, 670, 1745
AvaII	GGWCC	6 cut(s)	299, 1070, 1243, 1778, 2288, 2469
BaeGI	GKGCMC	2 cut(s)	737, 2107
BalI	TGGCCA	1 cut(s)	399
BanI	GGYRCC	4 cut(s)	200, 617, 697, 1658
BanII	GRGCYC	4 cut(s)	135, 236, 693, 2389
BauI	CACGAG	1 cut(s)	1863
BbsI	GAAGAC	1 cut(s)	1363
Bbv12I	GWGCWC	7 cut(s)	135, 693, 737, 757, 2107, 2238, 2389
BccI	CCATC	7 cut(s)	1198, 1526, 1781, 1955, 2041, 2110, 2460
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
BciVI	GTATCC	2 cut(s)	1043, 1661
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	4 cut(s)	640, 794, 1908, 2441
BfaI	CTAG	4 cut(s)	1929, 2097, 2285, 2375
BfmI	CTRYAG	4 cut(s)	1057, 1544, 1944, 2262
BfoI	RGCGCY	3 cut(s)	204, 898, 1584
BfuI	GTATCC	2 cut(s)	1043, 1661
BlpI	GCTNAGC	1 cut(s)	1985
BmcAI	AGTACT	1 cut(s)	2428
Bme1390I	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
Bme18I	GGWCC	6 cut(s)	299, 1070, 1243, 1778, 2288, 2469
BmgBI	CACGTC	1 cut(s)	1808
BmgT120I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2288, 2469
BmiI	GGNNCC	9 cut(s)	202, 235, 619, 699, 1188, 1244, 1660, 1779, 1813
BmrFI	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	5 cut(s)	802, 1093, 1402, 1539, 2346
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	1363
BpmI	CTGGAG	2 cut(s)	1713, 1725
Bpu1102I	GCTNAGC	1 cut(s)	1985
BpuEI	CTTGAG	1 cut(s)	1517
BsaAI	YACGTR	1 cut(s)	1763
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	2 cut(s)	201, 213
BsaJI	CCNNGG	6 cut(s)	228, 302, 381, 621, 1332, 1990
BsaWI	WCCGGW	1 cut(s)	1664
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 564, 594
Bsc4I	CCNNNNNNNGG	5 cut(s)	229, 282, 748, 1736, 1787
Bse1I	ACTGG	4 cut(s)	702, 792, 1246, 2298
Bse3DI	GCAATG	1 cut(s)	1262
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
BseDI	CCNNGG	6 cut(s)	228, 302, 381, 621, 1332, 1990
BseGI	GGATG	4 cut(s)	174, 258, 817, 2361
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	5 cut(s)	229, 282, 748, 1736, 1787
BseMI	GCAATG	1 cut(s)	1262
BseMII	CTCAG	3 cut(s)	1043, 1710, 2393
BseNI	ACTGG	4 cut(s)	702, 792, 1246, 2298
BseRI	GAGGAG	1 cut(s)	1314
BseSI	GKGCMC	2 cut(s)	737, 2107
BseYI	CCCAGC	2 cut(s)	594, 1825
BsgI	GTGCAG	1 cut(s)	2132
Bsh1236I	CGCG	3 cut(s)	46, 138, 435
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	7 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840
BshNI	GGYRCC	4 cut(s)	200, 617, 697, 1658
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	7 cut(s)	135, 693, 737, 757, 2107, 2238, 2389
BsiSI	CCGG	2 cut(s)	198, 1665
BslFI	GGGAC	4 cut(s)	820, 936, 1256, 1808
BslI	CCNNNNNNNGG	5 cut(s)	229, 282, 748, 1736, 1787
BsmAI	GTCTC	4 cut(s)	640, 794, 1908, 2441
BsmBI	CGTCTC	1 cut(s)	2441
BsmFI	GGGAC	4 cut(s)	820, 936, 1256, 1808
BsmI	GAATGC	1 cut(s)	2070
BsnI	GGCC	7 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840
Bsp1286I	GDGCHC	8 cut(s)	135, 236, 693, 737, 757, 2107, 2238, 2389
Bsp143I	GATC	4 cut(s)	460, 778, 1439, 2368
Bsp1720I	GCTNAGC	1 cut(s)	1985
Bsp19I	CCATGG	2 cut(s)	228, 621
BspANI	GGCC	7 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840
BspCNI	CTCAG	3 cut(s)	1042, 1711, 2392
BspFNI	CGCG	3 cut(s)	46, 138, 435
BspLI	GGNNCC	9 cut(s)	202, 235, 619, 699, 1188, 1244, 1660, 1779, 1813
BspMAI	CTGCAG	4 cut(s)	1061, 1548, 1948, 2266
BspPI	GGATC	1 cut(s)	1447
BspT107I	GGYRCC	4 cut(s)	200, 617, 697, 1658
BsrDI	GCAATG	1 cut(s)	1262
BsrI	ACTGG	4 cut(s)	702, 792, 1246, 2298
BssECI	CCNNGG	6 cut(s)	228, 302, 381, 621, 1332, 1990
BssMI	GATC	4 cut(s)	460, 778, 1439, 2368
BssNAI	GTATAC	1 cut(s)	1711
BssNI	GRCGYC	2 cut(s)	201, 213
BssSI	CACGAG	1 cut(s)	1863
BssT1I	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
Bst1107I	GTATAC	1 cut(s)	1711
Bst2BI	CACGAG	1 cut(s)	1863
Bst2UI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
Bst4CI	ACNGT	6 cut(s)	510, 717, 965, 2168, 2257, 2431
Bst6I	CTCTTC	5 cut(s)	702, 1279, 1449, 1705, 1754
BstACI	GRCGYC	2 cut(s)	201, 213
BstAPI	GCANNNNNTGC	3 cut(s)	1599, 1620, 2012
BstBAI	YACGTR	1 cut(s)	1763
BstC8I	GCNNGC	9 cut(s)	131, 592, 669, 726, 957, 1319, 1621, 1794, 1898
BstDEI	CTNAG	6 cut(s)	413, 526, 1029, 1719, 1985, 2379
BstDSI	CCRYGG	2 cut(s)	228, 621
BstENI	CCTNNNNNAGG	2 cut(s)	280, 746
BstF5I	GGATG	4 cut(s)	174, 258, 817, 2361
BstFNI	CGCG	3 cut(s)	46, 138, 435
BstH2I	RGCGCY	3 cut(s)	204, 898, 1584
BstHHI	GCGC	4 cut(s)	140, 203, 897, 1583
BstKTI	GATC	4 cut(s)	463, 781, 1442, 2371
BstMAI	GTCTC	4 cut(s)	640, 794, 1908, 2441
BstMBI	GATC	4 cut(s)	460, 778, 1439, 2368
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
BstNSI	RCATGY	7 cut(s)	341, 1321, 1462, 1593, 1623, 1678, 1772
BstSCI	CCNGG	4 cut(s)	1045, 1331, 1729, 2068
BstSFI	CTRYAG	4 cut(s)	1057, 1544, 1944, 2262
BstSLI	GKGCMC	2 cut(s)	737, 2107
BstUI	CGCG	3 cut(s)	46, 138, 435
BstV2I	GAAGAC	1 cut(s)	1363
BstX2I	RGATCY	1 cut(s)	1439
BstXI	CCANNNNNNTGG	3 cut(s)	1302, 2141, 2182
BstYI	RGATCY	1 cut(s)	1439
BstZ17I	GTATAC	1 cut(s)	1711
BsuI	GTATCC	2 cut(s)	1043, 1661
BsuRI	GGCC	7 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840
BtgI	CCRYGG	2 cut(s)	228, 621
BtrI	CACGTC	1 cut(s)	1808
BtsCI	GGATG	4 cut(s)	174, 258, 817, 2361
BtsI	GCAGTG	1 cut(s)	1941
BtsIMutI	CAGTG	6 cut(s)	486, 709, 1716, 1941, 2091, 2291
Cac8I	GCNNGC	9 cut(s)	131, 592, 669, 726, 957, 1319, 1621, 1794, 1898
CaiI	CAGNNNCTG	1 cut(s)	2261
CfoI	GCGC	4 cut(s)	140, 203, 897, 1583
Cfr13I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2288, 2469
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	388, 698, 1659, 1760, 2427
CviQI	GTAC	5 cut(s)	388, 698, 1659, 1760, 2427
DdeI	CTNAG	6 cut(s)	413, 526, 1029, 1719, 1985, 2379
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	4 cut(s)	462, 780, 1441, 2370
DpnII	GATC	4 cut(s)	460, 778, 1439, 2368
DraI	TTTAAA	2 cut(s)	1218, 2202
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	5 cut(s)	702, 1279, 1449, 1705, 1754
EarI	CTCTTC	5 cut(s)	702, 1279, 1449, 1705, 1754
Ecl136II	GAGCTC	3 cut(s)	133, 691, 2387
Eco130I	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
Eco147I	AGGCCT	1 cut(s)	1756
Eco24I	GRGCYC	4 cut(s)	135, 236, 693, 2389
Eco47I	GGWCC	6 cut(s)	299, 1070, 1243, 1778, 2288, 2469
Eco53kI	GAGCTC	3 cut(s)	133, 691, 2387
Eco57I	CTGAAG	3 cut(s)	265, 449, 1735
EcoICRI	GAGCTC	3 cut(s)	133, 691, 2387
EcoNI	CCTNNNNNAGG	2 cut(s)	280, 746
EcoO109I	RGGNCCY	2 cut(s)	1070, 1778
EcoRII	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
EcoT14I	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
EcoT22I	ATGCAT	1 cut(s)	1417
EcoT38I	GRGCYC	4 cut(s)	135, 236, 693, 2389
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
Esp3I	CGTCTC	1 cut(s)	2441
FalI	AAGNNNNNCTT	6 cut(s)	574, 606, 624, 656, 1371, 1403
FaqI	GGGAC	4 cut(s)	820, 936, 1256, 1808
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	2365
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	1710
FokI	GGATG	4 cut(s)	161, 245, 824, 2368
FriOI	GRGCYC	4 cut(s)	135, 236, 693, 2389
FspBI	CTAG	4 cut(s)	1929, 2097, 2285, 2375
GlaI	GCGC	4 cut(s)	139, 202, 896, 1582
GsaI	CCCAGC	2 cut(s)	598, 1829
GsuI	CTGGAG	2 cut(s)	1713, 1725
HaeII	RGCGCY	3 cut(s)	204, 898, 1584
HaeIII	GGCC	7 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840
HapII	CCGG	2 cut(s)	198, 1665
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	4 cut(s)	140, 203, 897, 1583
Hin1I	GRCGYC	2 cut(s)	201, 213
Hin6I	GCGC	4 cut(s)	138, 201, 895, 1581
HinP1I	GCGC	4 cut(s)	138, 201, 895, 1581
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	7 cut(s)	76, 824, 847, 881, 1721, 1919, 2123
HpaII	CCGG	2 cut(s)	198, 1665
HphI	GGTGA	3 cut(s)	148, 670, 1745
Hpy166II	GTNNAC	6 cut(s)	513, 735, 973, 1711, 2105, 2291
Hpy188III	TCNNGA	9 cut(s)	178, 283, 458, 467, 1571, 1704, 1956, 2303, 2317
Hpy8I	GTNNAC	6 cut(s)	513, 735, 973, 1711, 2105, 2291
Hpy99I	CGWCG	2 cut(s)	46, 215
HpyAV	CCTTC	7 cut(s)	179, 214, 953, 1083, 1193, 1427, 1730
HpyCH4III	ACNGT	6 cut(s)	510, 717, 965, 2168, 2257, 2431
HpyCH4IV	ACGT	4 cut(s)	213, 662, 1762, 1807
HpyF3I	CTNAG	6 cut(s)	413, 526, 1029, 1719, 1985, 2379
HpySE526I	ACGT	4 cut(s)	213, 662, 1762, 1807
Hsp92I	GRCGYC	2 cut(s)	201, 213
HspAI	GCGC	4 cut(s)	138, 201, 895, 1581
KasI	GGCGCC	1 cut(s)	200
KpnI	GGTACC	2 cut(s)	701, 1662
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	4 cut(s)	460, 778, 1439, 2368
LmnI	GCTCC	5 cut(s)	138, 239, 325, 1732, 2241
LweI	GCATC	5 cut(s)	802, 1093, 1402, 1539, 2346
MaeI	CTAG	4 cut(s)	1929, 2097, 2285, 2375
MaeII	ACGT	4 cut(s)	213, 662, 1762, 1807
MaeIII	GTNAC	5 cut(s)	328, 938, 1694, 1997, 2251
MalI	GATC	4 cut(s)	462, 780, 1441, 2370
MboI	GATC	4 cut(s)	460, 778, 1439, 2368
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	1439
MhlI	GDGCHC	8 cut(s)	135, 236, 693, 737, 757, 2107, 2238, 2389
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	9 cut(s)	369, 887, 1036, 1107, 1575, 1637, 1891, 2306, 2335
MluNI	TGGCCA	1 cut(s)	399
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	3 cut(s)	890, 1730, 2132
MmeI	TCCRAC	5 cut(s)	132, 234, 858, 1126, 1868
Mox20I	TGGCCA	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	1417
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	7 cut(s)	357, 899, 1083, 1217, 1365, 2201, 2273
MslI	CAYNNNNRTG	2 cut(s)	342, 2084
Msp20I	TGGCCA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	198, 1665
MspR9I	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	2070
MvaI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
MvnI	CGCG	3 cut(s)	46, 138, 435
NarI	GGCGCC	1 cut(s)	201
NcoI	CCATGG	2 cut(s)	228, 621
NdeI	CATATG	1 cut(s)	2365
NdeII	GATC	4 cut(s)	460, 778, 1439, 2368
NlaIV	GGNNCC	9 cut(s)	202, 235, 619, 699, 1188, 1244, 1660, 1779, 1813
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	1417
NspI	RCATGY	7 cut(s)	341, 1321, 1462, 1593, 1623, 1678, 1772
PaeI	GCATGC	2 cut(s)	1321, 1623
PceI	AGGCCT	1 cut(s)	1756
PciI	ACATGT	2 cut(s)	337, 1458
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PctI	GAATGC	1 cut(s)	2070
PfeI	GAWTC	4 cut(s)	76, 824, 847, 1919
PleI	GAGTC	3 cut(s)	889, 1729, 2131
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	3 cut(s)	889, 1729, 2131
Ppu21I	YACGTR	1 cut(s)	1763
PpuMI	RGGWCCY	2 cut(s)	1070, 1778
PscI	ACATGT	2 cut(s)	337, 1458
PshBI	ATTAAT	2 cut(s)	357, 2273
PsiI	TTATAA	1 cut(s)	2462
Psp124BI	GAGCTC	3 cut(s)	135, 693, 2389
Psp1406I	AACGTT	1 cut(s)	662
Psp5II	RGGWCCY	2 cut(s)	1070, 1778
Psp6I	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
PspFI	CCCAGC	2 cut(s)	594, 1825
PspGI	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
PspN4I	GGNNCC	9 cut(s)	202, 235, 619, 699, 1188, 1244, 1660, 1779, 1813
PspPI	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2288, 2469
PspPPI	RGGWCCY	2 cut(s)	1070, 1778
PstI	CTGCAG	4 cut(s)	1061, 1548, 1948, 2266
PstNI	CAGNNNCTG	1 cut(s)	2261
PsuI	RGATCY	1 cut(s)	1439
RsaI	GTAC	5 cut(s)	389, 699, 1660, 1761, 2428
RsaNI	GTAC	5 cut(s)	388, 698, 1659, 1760, 2427
RseI	CAYNNNNRTG	2 cut(s)	342, 2084
SacI	GAGCTC	3 cut(s)	135, 693, 2389
SaqAI	TTAA	7 cut(s)	357, 899, 1083, 1217, 1365, 2201, 2273
Sau3AI	GATC	4 cut(s)	460, 778, 1439, 2368
Sau96I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2288, 2469
ScaI	AGTACT	1 cut(s)	2428
SchI	GAGTC	3 cut(s)	890, 1730, 2132
ScrFI	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
SduI	GDGCHC	8 cut(s)	135, 236, 693, 737, 757, 2107, 2238, 2389
SfaNI	GCATC	5 cut(s)	802, 1093, 1402, 1539, 2346
SfcI	CTRYAG	4 cut(s)	1057, 1544, 1944, 2262
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	6 cut(s)	299, 1070, 1243, 1778, 2288, 2469
SmiI	ATTTAAAT	1 cut(s)	1218
SmiMI	CAYNNNNRTG	2 cut(s)	342, 2084
SmlI	CTYRAG	1 cut(s)	1496
SmoI	CTYRAG	1 cut(s)	1496
SphI	GCATGC	2 cut(s)	1321, 1623
Sse9I	AATT	9 cut(s)	369, 887, 1036, 1107, 1575, 1637, 1891, 2306, 2335
SseBI	AGGCCT	1 cut(s)	1756
SspDI	GGCGCC	1 cut(s)	200
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	4 cut(s)	1929, 2097, 2285, 2375
SstI	GAGCTC	3 cut(s)	135, 693, 2389
StuI	AGGCCT	1 cut(s)	1756
StyD4I	CCNGG	4 cut(s)	1045, 1331, 1729, 2068
StyI	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
SwaI	ATTTAAAT	1 cut(s)	1218
TaaI	ACNGT	6 cut(s)	510, 717, 965, 2168, 2257, 2431
TaiI	ACGT	4 cut(s)	216, 665, 1765, 1810
TaqI	TCGA	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	9 cut(s)	369, 887, 1036, 1107, 1575, 1637, 1891, 2306, 2335
TatI	WGTACW	1 cut(s)	2426
TauI	GCSGC	3 cut(s)	61, 129, 1835
TfiI	GAWTC	4 cut(s)	76, 824, 847, 1919
Tru1I	TTAA	7 cut(s)	357, 899, 1083, 1217, 1365, 2201, 2273
Tru9I	TTAA	7 cut(s)	357, 899, 1083, 1217, 1365, 2201, 2273
TscAI	CASTG	6 cut(s)	493, 709, 1723, 1948, 2091, 2298
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	9 cut(s)	80, 284, 484, 1065, 1107, 1212, 1283, 2204, 2352
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	6 cut(s)	493, 709, 1723, 1948, 2091, 2298
VneI	GTGCAC	2 cut(s)	733, 2103
VpaK11BI	GGWCC	6 cut(s)	299, 1070, 1243, 1778, 2288, 2469
VspI	ATTAAT	2 cut(s)	357, 2273
XagI	CCTNNNNNAGG	2 cut(s)	280, 746
XapI	RAATTY	3 cut(s)	1036, 2306, 2335
XceI	RCATGY	7 cut(s)	341, 1321, 1462, 1593, 1623, 1678, 1772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1833
XmiI	GTMKAC	1 cut(s)	1710
XspI	CTAG	4 cut(s)	1929, 2097, 2285, 2375
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	2428
Zsp2I	ATGCAT	1 cut(s)	1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.