Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

54493183 .. 54497482

Gene Structure 4300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGGAGTTGAAAGAGGTGCTTCCGAGACTTTCTTCTCAAACGTTGCTTGCATTACTCACCTCTGACGAGCTCTGGGTACCCAGTGAAGAGAAACGGTTTGAGCTGGCATTGTGCACATTCCTTTCAAAGGGTGCTCAATGCAAACAGGAAGATTATGATCATGGAAGTTCCAGTTCGGAGACAGGGACGGATGCACATTCCGATTCCTCTAAATCAAATGGAAAGAATCTGACTGATAGCTTCACTAATAAAAGGTTGGAGTCTGAATTGGGGCGCTTAACTCTAAAAGATGATTTAGAGGGACATAATACAGCTCGTAACCTTCTGATAGAGCTTGCAGACTGTGTAGTTGACTTCCAAACAGGAGGTTCAAATGCCAAACAGCAAGTGCAACAAGTTGCTTACCCTCAGTCAAATTTTGAGCCAGGATACAACTGCAGCATGGGAGGTCCTTCATCATTTAATACATTTTCCGACATAGATGCAATTAGAACTTCATGTTATGCAGAAATGCCTATTGGTGTTGGAGTAAGTAGATTGGGGGAAAATGGAGGGGCTATGGAGGGGCCATCTGATGAAGGGTCATGCTACCATTTAAATAACAATAGTTGGCTTGGTAGGGACCAGTCAAGGCAATGCTCGTCAATGAACTCTTCAAGTAGTGAGCTAATGCCAAATGATTGGGGAAGATGTGGCATGCCTCCTCTTTCCTGGGGTGGCAGGGTTGTAGGCAGAAGACAGCTTAAAGGTTATGGTAAAGGAGAACTTGGGGTTGGTGGGGAGGAATATGATGCATTTGTAAATATATTTGAAGGAGGATCTCTTCTATACTGCAACATGTCTTTTGAGGCACTTTTGAATGTAAGAAAGCAACTTGAGGAAATGGGGTTTCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTTTGAGCCAGAGAGTTCAAGAAATTGGCGCTGATACATGCAAAAGTTGCTGTCTAACAAGCATAGCATGCAGTTGCAGACAGCAATTTTCGTTCTCACATGGAGGTACCAACGGATACTACATGCAAGAGCATAATCAGAGTAACTCTTCTGGAGTATACATCACTGAGTCTGCTCCAGGTGAAGGAAATGGCCTCTTCAGGCCTGTACGTGTGCATGTCAGGGGTCCTATTGATGGGCTTGCTGGTATTGGACGTGGAACCACATTTGTCCCAGCAGCCGCTTGGCCTCCAACTCGGTTCGTCTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTGCCAGCAGTCTCTTGCTAATGATGATTCAGAGGCTAGAGCTGACCACACTGCAGAGCTGTCAGGAGATGGATTGACAGCTTTGGTTGGGCTAAGCCAAGGAGGTAACAATGTAGCTAATGCTCATGTAGAGCAAACAGAGAGGGGCTATGAGATGGATATGCAAAGCCGAATGCCTGGAACTTCCATGTCAGTGCCAAGTTCTAGTGGTGCACCCGTGCAGATGGTAGAGTCATCAGACCAAGCACTTGGGATTGAGTGGGATAATGCAAACAGTTCCTCCATATCATTGGATATGAAAACACCTTTAAGTCACTTCCCTCCATTCCGCTTTGGGGTGCAATTTGAGGATGTACACAGACTCAGTGATGGCCAAGTCAAGCACTCTTCAGAAGTCTTTTATGCTGGTTCTTTATGGAAGGTTAGTGTTCAGGCTTTTAATGATGAGGACCCTCAAGGACGCCGAACACTTGGATTATTTCTCCACCGACGTAAAGCTGAGATTACCGACCCGTATAGAAAGGTGCAGATGTATGTCGATTCTCGTGAAAAGGTTACTGCCCGCTACCAGCTAATATGTCCATCAAAGAGGGAAGTCATGGTGTTTGGAAGCTACAAGCAAACAGGCACCCTTTTACCAAAAGCTCCGAAGGGCTGGGGCTGGCGAACAGCTCTGTTATTTGATGAACTTGCAGATCTTCTTCAAAATGGGGCCTTAAGAGTGGCTGCAGTGGTGCAGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

672

Amino Acids

73.53

Weight (kDa)

5.41

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	76, 1037
AccB1I	GGYRCC	3 cut(s)	76, 1037, 1898
AccI	GTMKAC	1 cut(s)	1089
AciI	CCGC	3 cut(s)	1212, 1600, 1834
AclI	AACGTT	1 cut(s)	41
AclWI	GGATC	1 cut(s)	826
AcoI	YGGCCR	1 cut(s)	1642
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	2 cut(s)	1114, 1644
AcyI	GRCGYC	1 cut(s)	1732
AfaI	GTAC	4 cut(s)	78, 1039, 1140, 1626
AfiI	CCNNNNNNNGG	4 cut(s)	127, 1115, 1166, 1606
AflII	CTTAAG	1 cut(s)	1987
AflIII	ACRYGT	2 cut(s)	837, 1141
AgsI	TTSAA	8 cut(s)	10, 126, 372, 657, 812, 859, 950, 1976
AjiI	CACGTC	1 cut(s)	1187
AjnI	CCWGG	4 cut(s)	424, 710, 1108, 1447
AjuI	GAANNNNNNNTTGG	4 cut(s)	501, 533, 756, 788
Alw21I	GWGCWC	4 cut(s)	72, 116, 136, 1486
Alw26I	GTCTC	3 cut(s)	19, 173, 1287
Alw44I	GTGCAC	2 cut(s)	112, 1482
AlwI	GGATC	1 cut(s)	826
AoxI	GGCC	6 cut(s)	566, 1123, 1133, 1217, 1642, 1983
ApaLI	GTGCAC	2 cut(s)	112, 1482
ApeKI	GCWGC	5 cut(s)	438, 922, 1208, 1997, 2008
ApoI	RAATTY	1 cut(s)	415
Asp718I	GGTACC	2 cut(s)	76, 1037
AspLEI	GCGC	2 cut(s)	276, 962
AspS9I	GGNCC	6 cut(s)	449, 566, 622, 1157, 1720, 1983
AsuHPI	GGTGA	2 cut(s)	49, 1124
AvaII	GGWCC	4 cut(s)	449, 622, 1157, 1720
BaeGI	GKGCMC	2 cut(s)	116, 1486
BalI	TGGCCA	1 cut(s)	1644
BanI	GGYRCC	3 cut(s)	76, 1037, 1898
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	2 cut(s)	1242, 1815
BbsI	GAAGAC	1 cut(s)	742
Bbv12I	GWGCWC	4 cut(s)	72, 116, 136, 1486
BbvI	GCAGC	4 cut(s)	450, 909, 1220, 1984
BccI	CCATC	8 cut(s)	577, 905, 1160, 1334, 1420, 1489, 1634, 1861
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	4 cut(s)	426, 712, 1110, 1449
BciVI	GTATCC	2 cut(s)	422, 1040
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	19, 173, 1287
BfaI	CTAG	2 cut(s)	1308, 1476
BfmI	CTRYAG	4 cut(s)	436, 923, 1323, 1998
BfoI	RGCGCY	2 cut(s)	277, 963
BfrI	CTTAAG	1 cut(s)	1987
BfuI	GTATCC	2 cut(s)	422, 1040
BglII	AGATCT	1 cut(s)	1966
BisI	GCNGC	6 cut(s)	439, 923, 1209, 1212, 1998, 2009
BlpI	GCTNAGC	1 cut(s)	1364
BlsI	GCNGC	6 cut(s)	440, 924, 1210, 1213, 1999, 2010
Bme1390I	CCNGG	4 cut(s)	426, 712, 1110, 1449
Bme18I	GGWCC	4 cut(s)	449, 622, 1157, 1720
BmgBI	CACGTC	1 cut(s)	1187
BmgT120I	GGNCC	6 cut(s)	449, 566, 622, 1157, 1720, 1983
BmiI	GGNNCC	9 cut(s)	78, 567, 623, 1039, 1158, 1192, 1722, 1900, 1984
BmrFI	CCNGG	4 cut(s)	426, 712, 1110, 1449
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	4 cut(s)	181, 472, 781, 918
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	742
BpmI	CTGGAG	2 cut(s)	1092, 1104
Bpu1102I	GCTNAGC	1 cut(s)	1364
BpuEI	CTTGAG	2 cut(s)	896, 1710
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	1732
BsaJI	CCNNGG	2 cut(s)	711, 1369
BsaXI	ACNNNNNCTCC	2 cut(s)	1535, 1565
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 1115, 1166, 1606
Bse1I	ACTGG	3 cut(s)	81, 171, 625
Bse3DI	GCAATG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	4 cut(s)	426, 712, 1110, 1449
BseDI	CCNNGG	2 cut(s)	711, 1369
BseGI	GGATG	2 cut(s)	196, 1627
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	127, 1115, 1166, 1606
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	4 cut(s)	422, 1089, 1648, 1761
BseNI	ACTGG	3 cut(s)	81, 171, 625
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	2 cut(s)	116, 1486
BseXI	GCAGC	4 cut(s)	450, 909, 1220, 1984
BseYI	CCCAGC	2 cut(s)	1204, 1926
BsgI	GTGCAG	2 cut(s)	1511, 1817
BshFI	GGCC	6 cut(s)	568, 1125, 1135, 1219, 1644, 1985
BshNI	GGYRCC	3 cut(s)	76, 1037, 1898
BsiHKAI	GWGCWC	4 cut(s)	72, 116, 136, 1486
BslFI	GGGAC	4 cut(s)	199, 315, 635, 1187
BslI	CCNNNNNNNGG	4 cut(s)	127, 1115, 1166, 1606
BsmAI	GTCTC	3 cut(s)	19, 173, 1287
BsmFI	GGGAC	4 cut(s)	199, 315, 635, 1187
BsmI	GAATGC	1 cut(s)	1449
BsnI	GGCC	6 cut(s)	568, 1125, 1135, 1219, 1644, 1985
Bsp1286I	GDGCHC	4 cut(s)	72, 116, 136, 1486
Bsp1407I	TGTACA	1 cut(s)	1624
Bsp143I	GATC	3 cut(s)	157, 818, 1966
Bsp1720I	GCTNAGC	1 cut(s)	1364
BspACI	CCGC	3 cut(s)	1212, 1600, 1834
BspANI	GGCC	6 cut(s)	568, 1125, 1135, 1219, 1644, 1985
BspCNI	CTCAG	4 cut(s)	421, 1090, 1647, 1762
BspLI	GGNNCC	9 cut(s)	78, 567, 623, 1039, 1158, 1192, 1722, 1900, 1984
BspMAI	CTGCAG	4 cut(s)	440, 927, 1327, 2002
BspPI	GGATC	1 cut(s)	826
BspT107I	GGYRCC	3 cut(s)	76, 1037, 1898
BspTI	CTTAAG	1 cut(s)	1987
BsrDI	GCAATG	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	1624
BsrI	ACTGG	3 cut(s)	81, 171, 625
BssECI	CCNNGG	2 cut(s)	711, 1369
BssMI	GATC	3 cut(s)	157, 818, 1966
BssNAI	GTATAC	1 cut(s)	1090
BssNI	GRCGYC	1 cut(s)	1732
BssSI	CACGAG	2 cut(s)	1242, 1815
BssT1I	CCWWGG	1 cut(s)	1369
Bst1107I	GTATAC	1 cut(s)	1090
Bst2BI	CACGAG	2 cut(s)	1242, 1815
Bst2UI	CCWGG	4 cut(s)	426, 712, 1110, 1449
Bst4CI	ACNGT	3 cut(s)	96, 344, 1547
Bst6I	CTCTTC	6 cut(s)	81, 658, 828, 1084, 1133, 1663
BstACI	GRCGYC	1 cut(s)	1732
BstAFI	CTTAAG	1 cut(s)	1987
BstAPI	GCANNNNNTGC	2 cut(s)	978, 999
BstAUI	TGTACA	1 cut(s)	1624
BstBAI	YACGTR	1 cut(s)	1142
BstC8I	GCNNGC	9 cut(s)	48, 105, 336, 698, 1000, 1173, 1277, 1834, 1934
BstDEI	CTNAG	5 cut(s)	408, 1098, 1364, 1634, 1770
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	196, 1627
BstH2I	RGCGCY	2 cut(s)	277, 963
BstHHI	GCGC	2 cut(s)	276, 962
BstKTI	GATC	3 cut(s)	160, 821, 1969
BstMAI	GTCTC	3 cut(s)	19, 173, 1287
BstMBI	GATC	3 cut(s)	157, 818, 1966
BstMWI	GCNNNNNNNGC	3 cut(s)	928, 978, 999
BstNI	CCWGG	4 cut(s)	426, 712, 1110, 1449
BstNSI	RCATGY	6 cut(s)	700, 841, 972, 1002, 1057, 1151
BstSCI	CCNGG	4 cut(s)	424, 710, 1108, 1447
BstSFI	CTRYAG	4 cut(s)	436, 923, 1323, 1998
BstSLI	GKGCMC	2 cut(s)	116, 1486
BstV1I	GCAGC	4 cut(s)	450, 909, 1220, 1984
BstV2I	GAAGAC	1 cut(s)	742
BstX2I	RGATCY	2 cut(s)	818, 1966
BstXI	CCANNNNNNTGG	3 cut(s)	681, 1520, 1561
BstYI	RGATCY	2 cut(s)	818, 1966
BstZ17I	GTATAC	1 cut(s)	1090
BsuI	GTATCC	2 cut(s)	422, 1040
BsuRI	GGCC	6 cut(s)	568, 1125, 1135, 1219, 1644, 1985
BtrI	CACGTC	1 cut(s)	1187
BtsCI	GGATG	2 cut(s)	196, 1627
BtsI	GCAGTG	2 cut(s)	1320, 2007
BtsIMutI	CAGTG	6 cut(s)	88, 1095, 1320, 1470, 1642, 2007
Cac8I	GCNNGC	9 cut(s)	48, 105, 336, 698, 1000, 1173, 1277, 1834, 1934
CfoI	GCGC	2 cut(s)	276, 962
Cfr13I	GGNCC	6 cut(s)	449, 566, 622, 1157, 1720, 1983
CseI	GACGC	1 cut(s)	1740
Csp6I	GTAC	4 cut(s)	77, 1038, 1139, 1625
CviQI	GTAC	4 cut(s)	77, 1038, 1139, 1625
DdeI	CTNAG	5 cut(s)	408, 1098, 1364, 1634, 1770
DpnI	GATC	3 cut(s)	159, 820, 1968
DpnII	GATC	3 cut(s)	157, 818, 1966
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	1642
Eam1104I	CTCTTC	6 cut(s)	81, 658, 828, 1084, 1133, 1663
EarI	CTCTTC	6 cut(s)	81, 658, 828, 1084, 1133, 1663
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	1369
Eco147I	AGGCCT	1 cut(s)	1135
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	4 cut(s)	449, 622, 1157, 1720
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	1114, 1644
EcoICRI	GAGCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoO109I	RGGNCCY	4 cut(s)	449, 1157, 1720, 1983
EcoRII	CCWGG	4 cut(s)	424, 710, 1108, 1447
EcoT14I	CCWWGG	1 cut(s)	1369
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	1369
FalI	AAGNNNNNCTT	3 cut(s)	35, 750, 782
FaqI	GGGAC	4 cut(s)	199, 315, 635, 1187
FauI	CCCGC	1 cut(s)	1841
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	1089
Fnu4HI	GCNGC	6 cut(s)	439, 923, 1209, 1212, 1998, 2009
FokI	GGATG	2 cut(s)	203, 1634
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	6 cut(s)	439, 923, 1209, 1212, 1998, 2009
FspBI	CTAG	2 cut(s)	1308, 1476
GlaI	GCGC	2 cut(s)	275, 961
GluI	GCNGC	6 cut(s)	439, 923, 1209, 1212, 1998, 2009
GsaI	CCCAGC	2 cut(s)	1208, 1930
GsuI	CTGGAG	2 cut(s)	1092, 1104
HaeII	RGCGCY	2 cut(s)	277, 963
HaeIII	GGCC	6 cut(s)	568, 1125, 1135, 1219, 1644, 1985
HgaI	GACGC	1 cut(s)	1740
HhaI	GCGC	2 cut(s)	276, 962
Hin1I	GRCGYC	1 cut(s)	1732
Hin6I	GCGC	2 cut(s)	274, 960
HinP1I	GCGC	2 cut(s)	274, 960
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	8 cut(s)	203, 226, 260, 1100, 1298, 1502, 1632, 1811
HphI	GGTGA	2 cut(s)	49, 1124
Hpy166II	GTNNAC	5 cut(s)	114, 352, 1090, 1484, 1627
Hpy188III	TCNNGA	4 cut(s)	950, 1083, 1335, 1817
Hpy8I	GTNNAC	5 cut(s)	114, 352, 1090, 1484, 1627
Hpy99I	CGWCG	1 cut(s)	1764
HpyAV	CCTTC	7 cut(s)	332, 462, 572, 806, 1109, 1684, 1915
HpyCH4III	ACNGT	3 cut(s)	96, 344, 1547
HpyCH4IV	ACGT	4 cut(s)	41, 1141, 1186, 1762
HpyF10VI	GCNNNNNNNGC	3 cut(s)	928, 978, 999
HpyF3I	CTNAG	5 cut(s)	408, 1098, 1364, 1634, 1770
HpySE526I	ACGT	4 cut(s)	41, 1141, 1186, 1762
Hsp92I	GRCGYC	1 cut(s)	1732
HspAI	GCGC	2 cut(s)	274, 960
KpnI	GGTACC	2 cut(s)	80, 1041
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	157, 818, 1966
LmnI	GCTCC	2 cut(s)	1111, 1921
Lsp1109I	GCAGC	4 cut(s)	450, 909, 1220, 1984
LweI	GCATC	4 cut(s)	181, 472, 781, 918
MaeI	CTAG	2 cut(s)	1308, 1476
MaeII	ACGT	4 cut(s)	41, 1141, 1186, 1762
MaeIII	GTNAC	5 cut(s)	317, 1073, 1376, 1583, 1825
MalI	GATC	3 cut(s)	159, 820, 1968
MboI	GATC	3 cut(s)	157, 818, 1966
MflI	RGATCY	2 cut(s)	818, 1966
MhlI	GDGCHC	4 cut(s)	72, 116, 136, 1486
MlsI	TGGCCA	1 cut(s)	1644
MluCI	AATT	7 cut(s)	266, 415, 486, 954, 1016, 1270, 1613
MluNI	TGGCCA	1 cut(s)	1644
MlyI	GAGTC	4 cut(s)	269, 1109, 1511, 1626
MmeI	TCCRAC	4 cut(s)	237, 498, 505, 1247
Mox20I	TGGCCA	1 cut(s)	1644
Mph1103I	ATGCAT	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	1644
MseI	TTAA	7 cut(s)	278, 462, 596, 744, 1580, 1710, 1988
MslI	CAYNNNNRTG	1 cut(s)	1463
Msp20I	TGGCCA	1 cut(s)	1644
MspCI	CTTAAG	1 cut(s)	1987
MspR9I	CCNGG	4 cut(s)	426, 712, 1110, 1449
Mva1269I	GAATGC	1 cut(s)	1449
MvaI	CCWGG	4 cut(s)	426, 712, 1110, 1449
MwoI	GCNNNNNNNGC	3 cut(s)	928, 978, 999
NdeII	GATC	3 cut(s)	157, 818, 1966
NlaIV	GGNNCC	9 cut(s)	78, 567, 623, 1039, 1158, 1192, 1722, 1900, 1984
NmuCI	GTSAC	1 cut(s)	1583
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	6 cut(s)	700, 841, 972, 1002, 1057, 1151
PaeI	GCATGC	2 cut(s)	700, 1002
PceI	AGGCCT	1 cut(s)	1135
PciI	ACATGT	1 cut(s)	837
PctI	GAATGC	1 cut(s)	1449
PfeI	GAWTC	4 cut(s)	203, 226, 1298, 1811
PkrI	GCNGC	6 cut(s)	440, 924, 1210, 1213, 1999, 2010
PleI	GAGTC	4 cut(s)	268, 1108, 1510, 1626
PpsI	GAGTC	4 cut(s)	268, 1108, 1510, 1626
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	3 cut(s)	449, 1157, 1720
PscI	ACATGT	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	72
Psp1406I	AACGTT	1 cut(s)	41
Psp5II	RGGWCCY	3 cut(s)	449, 1157, 1720
Psp6I	CCWGG	4 cut(s)	424, 710, 1108, 1447
PspFI	CCCAGC	2 cut(s)	1204, 1926
PspGI	CCWGG	4 cut(s)	424, 710, 1108, 1447
PspN4I	GGNNCC	9 cut(s)	78, 567, 623, 1039, 1158, 1192, 1722, 1900, 1984
PspPI	GGNCC	6 cut(s)	449, 566, 622, 1157, 1720, 1983
PspPPI	RGGWCCY	3 cut(s)	449, 1157, 1720
PstI	CTGCAG	4 cut(s)	440, 927, 1327, 2002
PsuI	RGATCY	2 cut(s)	818, 1966
RsaI	GTAC	4 cut(s)	78, 1039, 1140, 1626
RsaNI	GTAC	4 cut(s)	77, 1038, 1139, 1625
RseI	CAYNNNNRTG	1 cut(s)	1463
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	7 cut(s)	278, 462, 596, 744, 1580, 1710, 1988
SatI	GCNGC	6 cut(s)	439, 923, 1209, 1212, 1998, 2009
Sau3AI	GATC	3 cut(s)	157, 818, 1966
Sau96I	GGNCC	6 cut(s)	449, 566, 622, 1157, 1720, 1983
SchI	GAGTC	4 cut(s)	269, 1109, 1511, 1626
ScrFI	CCNGG	4 cut(s)	426, 712, 1110, 1449
SduI	GDGCHC	4 cut(s)	72, 116, 136, 1486
SfaNI	GCATC	4 cut(s)	181, 472, 781, 918
SfcI	CTRYAG	4 cut(s)	436, 923, 1323, 1998
SinI	GGWCC	4 cut(s)	449, 622, 1157, 1720
SmiI	ATTTAAAT	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	1463
SmlI	CTYRAG	3 cut(s)	875, 1725, 1987
SmoI	CTYRAG	3 cut(s)	875, 1725, 1987
SphI	GCATGC	2 cut(s)	700, 1002
Sse9I	AATT	7 cut(s)	266, 415, 486, 954, 1016, 1270, 1613
SseBI	AGGCCT	1 cut(s)	1135
SsiI	CCGC	3 cut(s)	1212, 1600, 1834
SspMI	CTAG	2 cut(s)	1308, 1476
SstI	GAGCTC	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	1135
StyD4I	CCNGG	4 cut(s)	424, 710, 1108, 1447
StyI	CCWWGG	1 cut(s)	1369
SwaI	ATTTAAAT	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	96, 344, 1547
TaiI	ACGT	4 cut(s)	44, 1144, 1189, 1765
TaqI	TCGA	1 cut(s)	1809
TasI	AATT	7 cut(s)	266, 415, 486, 954, 1016, 1270, 1613
TatI	WGTACW	1 cut(s)	1624
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	4 cut(s)	203, 226, 1298, 1811
Tru1I	TTAA	7 cut(s)	278, 462, 596, 744, 1580, 1710, 1988
Tru9I	TTAA	7 cut(s)	278, 462, 596, 744, 1580, 1710, 1988
TscAI	CASTG	6 cut(s)	88, 1102, 1327, 1470, 1642, 2007
TseFI	GTSAC	1 cut(s)	1583
TseI	GCWGC	5 cut(s)	438, 922, 1208, 1997, 2008
Tsp45I	GTSAC	1 cut(s)	1583
TspDTI	ATGAA	6 cut(s)	444, 486, 591, 662, 1583, 1971
TspGWI	ACGGA	2 cut(s)	203, 1059
TspRI	CASTG	6 cut(s)	88, 1102, 1327, 1470, 1642, 2007
Vha464I	CTTAAG	1 cut(s)	1987
VneI	GTGCAC	2 cut(s)	112, 1482
VpaK11BI	GGWCC	4 cut(s)	449, 622, 1157, 1720
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	6 cut(s)	700, 841, 972, 1002, 1057, 1151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1212
XmiI	GTMKAC	1 cut(s)	1089
XspI	CTAG	2 cut(s)	1308, 1476
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.