Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

31517295 .. 31517660

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTATTCCTCTATGTTGCCCTTGGCTTGCTTTTGACGGCAGACAACATGAGGTACTCTTACGGGTTTCTCTTTCTCCCCGTCTCTACTTACTCTTTATTATGTGAAACCCAATTGGCCTTCAATGCATTGTTCTCTTTCTTTCTGAACTCTCAAAAATTTACTCCTTTTATATTCAACTCTCTTGTCCTTGTCACTATGTCTGCCTCCGTTCTCGCAATCAATTCTGACTCTGAAAACACTACCGATCGCATCTCTAAACGAAAGTATGTGATCGGTTTCTTGTGTACCCTCGGCGCCTCCGCGACTTACTCATTGTACCTTTCCCTTGTGCAACTTTCATTCCAGAAGGTGATAAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

9.23

Isoelectric Point (pI)

23.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	1 - 120	1.2e-40	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	1 cut(s)	305
AciI	CCGC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	3 cut(s)	56, 289, 320
AgsI	TTSAA	2 cut(s)	124, 178
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	22, 292
BseDI	CCNNGG	2 cut(s)	22, 292
Bsh1236I	CGCG	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	247, 273
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	22, 292
BssMI	GATC	2 cut(s)	247, 273
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	250, 276
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	247, 273
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstUI	CGCG	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	55, 288, 319
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	2 cut(s)	27, 119
CviKI_1	RGCY	2 cut(s)	27, 119
CviQI	GTAC	3 cut(s)	55, 288, 319
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	2 cut(s)	249, 275
DpnII	GATC	2 cut(s)	247, 273
Eco130I	CCWWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	52
FaiI	YATR	6 cut(s)	15, 50, 103, 173, 200, 270
FatI	CATG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	147, 229, 235
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	130, 343
HpyCH4V	TGCA	2 cut(s)	128, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	247, 273
LpnPI	CCDG	1 cut(s)	359
LweI	GCATC	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	249, 275
MboI	GATC	2 cut(s)	247, 273
MfeI	CAATTG	1 cut(s)	113
MluCI	AATT	3 cut(s)	113, 158, 223
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	20, 45, 217, 302, 310
Mph1103I	ATGCAT	1 cut(s)	130
MunI	CAATTG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	125
NarI	GGCGCC	1 cut(s)	297
NdeII	GATC	2 cut(s)	247, 273
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	298
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	130
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	298
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	56, 289, 320
RsaNI	GTAC	3 cut(s)	55, 288, 319
Sau3AI	GATC	2 cut(s)	247, 273
SchI	GAGTC	1 cut(s)	224
SetI	ASST	3 cut(s)	56, 324, 354
SfaNI	GCATC	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	113, 158, 223
SsiI	CCGC	1 cut(s)	303
SspDI	GGCGCC	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	22
TasI	AATT	3 cut(s)	113, 158, 223
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	199
XapI	RAATTY	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.