Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013245.1

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Reverse (-)

4816 .. 14379

Gene Structure 9564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013245.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4185 bp

atggaagctaactacgctaacaaccaccaccacaaccaagcgacgcggtgcttcgggccgcagatgaaaatgacgattcagccctcacagcagcagcagcagcagcactccgacaacgaccgcagcagcggcgagctccgcgccctcgactgcaacctcacctccctctgcgaccacatccagaccgaaggcttcaactccggcgccttctccgacgtcctcgtcctcgccatgggctccacctaccacctccaccgcctcatcctctcccgcagcccctacttcaggaatatgcttcatggaccttggaaagaagccaacgctcccattgtgacattacatgtagatgataagaatattaatgcagaggcaattgcaacggccttggcgtacttgtatggccaccaccccaagcttagtgataccaatgcctttcgcgttcttgctgctgcttcttttcttgatcttcaggatttatgtgctatatgcactgacttcattatatcggaactgtggacttcaaacttcttagcctatcaggtgtttgcggaggggcaagattatggcatacatggagaacgggtaagaaatgcttgctggggctacctttgtcaaagcggtgccatggagttgaaagaggtgcttccgagactttcttctcaaacgttgcttgcattactcacctctgacgagctctgggtacccagtgaagagaaacggtttgagctggcattgtgcacattcctttcaaagggtgctcaatgcaaacaggaagattatgatcatggaagttccagttcggagacagggacggatgcacattccgattcctctaaatcaaatggaaagaatctgactgatagcttcactaataaaaggttgcagtctgaattggggcgcttaactctaaaagatgatttagagggacataatacagctcgtaaccttctgatagagcttgcagactgtgtagttgacttccaaacaggaggttcaaatgccaaacagcaagtgcaacaagttgcttaccctcagtcaaattttgagccaggatacaacagcagcatgggaggtccttcatcatttaatacattttcagacatagatgcaattagaacttcatgttatgcggaaatgcctattggtgttggagtaagtagattgggggaaaatggaggggctatggaggggccatctgatgaagggtcatgctaccatttaaataacaatagttggcttgatagggaccagtcaaggcaatgctcgtcaatgaactcttcaagtagtgagctaatgccaaatgattggggaagatgtggcatgcctcctctttcctggggtggcagggttgtaggcagaagacagcttaaaggttatggtaaaggagaacttggggttggtggggaggaatatgatgcatttgtaaatatatttgaaggaggatctcttctatactgcaacatgtcttttgaggcacttttgaatgtaagaaagcaacttgaggaaatggggtttccttgcaaagctgtaaatgatggtctttggctgcagatgcttttgagccagagagttcaagaaattggagctgatacatgcaaaagttgctgtctaacaagcatagcatgcagttgcagacagcaattttcgttctcacatggaggttccaatggatactacatgcaagagcataatcagagtaactcttctggagtatacatcactgagtctgctccaggtgaaggaaatggcctcttcaggcctgtacgtgtgcatgtcaggggtcctattgatgggcttgctggtattggacgtggaaccacatttgtcccagcagccgcttggcctccaactcggttcgtcttttctcgtgtgccatttggtatgggcaacagaaattgccagcagtctcttgctaatgatgattcagaggctagagctgaccacactgcagagctgtcaggagatggattgacagctttggttgggttaagccaaggaggtaacaatgcagctaatgctcatgtagagcaaacagagaggggctatgagatggatatgcaaagccgaatgcctggaacttccgtgtcagtgccaagttctagtggtgcacctgtgcagatggtcgagtcatcagaccaagcacttgggattgagtgggataatgcaaacagttcatccatatctttggatatgaaaacacctttaagtcacttccctccattccgctttggggtgcaatttgaggatgtacacagactcagtgatggccaagtcaagcactcttcagaagtcttttatgctggttctttatggaaggttagtgttcaggcttttaatgatgaggaccctcaaggacgccgaacacttggattatttctacatcgacgtaaagctgatattaccgacccgtatagaaaggtgcagatgtatttcgattctcgtgaaaaggttactgcccgctaccagctaatatgtccatcaaagagggaagtcatggtgtttggaagctacaagcaaacaggcacccttttaccaaaagctccgaagggctggggctggcgaacagctctgttatttgatgaacttgcagatcttcttcaaaatggggccttaagagtggctgcagtggtgcagcttggttttggagttccgggtctgtcaatgggagccttagccaggaatcgtaagcgtatagacgagtgtctgagctcgaattctcccttttccccctattctcacatttccaagcgacccagattattctcctcctcttcttcttcttcttctccgacgacgacgacgacccgacccgtattctcttctaaccgcgccgtcgccagggtctcccgctacccagccgcgcagctcccgttgcgtcgaattcacgcgcctgttaagcccgaaaagttcagctcctgctgctccggccgaggggaccagtcgggtgacgtcaccgtcatgggcaatttgttgcggcgttacgccaatgcgaagaatgaagctcttgccacgtgtaagagtaagaaaaggagggaggaggaggaggaggaggaggtgattcaattggatgaggaggatgatgatgatcagaatcgggtttcggaggattcgagcatcgaggaggtggtggatttaggggaggatgagccggatgtgcaggaattggagaccaagagggtgcgatgtgaagctcaggccacgcagccgtcggcttcttcggtggcttcggacttcaccacattgacagtgaataatacctgtttgaaagtggagagttcggagcagatgagggagctgctggccctgaatcccgaggatttgccgagttacaagaagttgattgaggagttggataggaagactactcccaaattgaaacaattgggtttcgaaatccaggtgaatgagagtaagcgggccctgtttgagtctttgcggccaaagaagaaaccagtagaggaggcgcctcgcgaaccttttatccctctcaaagaagaggagaaggctgtggttgagcgagcattttcttatgcgaatcggaggaaggtccttgtaactcatgagaactcaaacatacaaattactggtgaacttttgcagtgccttaaaccatctgcatggttgaatgatgaggtcataaacgtctaccttgagttgctgaaggagagggaaaagagagatccaaagaagtttctgaaatgtcattttttcaacacatttttctacaaaaagttaataggtggaagaagtggctatgattataaagctgtcagaagatggactacccaaaaaaagctgggatacagcctcattgactgcgacaaaatattcgtcccaatccacaaagaaatacactggtgcttggctgtgattaataagagagatcagaagttccagtatcttgactcgctcggaggacgcgataccaaagtgatgcaactattggctaaatactacgctgatgaagtgaaggaaaagagtgggaaagacgttgatgtgagttcttgggaatttgaatgtgttgaagaccttcctgagcaggagaatgggtttgattgtggcgtattcatgatcaagtatgctgacttttacagtaggggattggatctctgtttccaccagaaacacatgccatattttcgattgaggacagccaaggaggttctacaattgagagctgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

1394

Amino Acids

155.81

Weight (kDa)

5.92

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3762
AasI	GACNNNNNNGTC	2 cut(s)	221, 2954
AatII	GACGTC	2 cut(s)	219, 2952
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	5 cut(s)	203, 620, 700, 2522, 3463
AccI	GTMKAC	2 cut(s)	1713, 3645
AccII	CGCG	8 cut(s)	46, 141, 438, 2829, 2861, 2888, 3471, 3921
AclI	AACGTT	1 cut(s)	665
AclWI	GGATC	3 cut(s)	1450, 3674, 4113
AcoI	YGGCCR	4 cut(s)	400, 2266, 2926, 3437
AcsI	RAATTY	4 cut(s)	1039, 2713, 2880, 4010
AcuI	CTGAAG	5 cut(s)	268, 452, 1738, 2268, 3680
AcvI	CACGTG	1 cut(s)	3012
AcyI	GRCGYC	5 cut(s)	204, 216, 2356, 2949, 3464
AfaI	GTAC	4 cut(s)	392, 702, 1764, 2250
AfiI	CCNNNNNNNGG	9 cut(s)	232, 285, 751, 1739, 1790, 2230, 2676, 2838, 2931
AflII	CTTAAG	1 cut(s)	2611
AflIII	ACRYGT	4 cut(s)	340, 1461, 1765, 3011
AjiI	CACGTC	1 cut(s)	1811
AjnI	CCWGG	7 cut(s)	1048, 1334, 1732, 2071, 2675, 2837, 3396
AjuI	GAANNNNNNNTTGG	4 cut(s)	1125, 1157, 1380, 1412
AloI	GAACNNNNNNTCC	2 cut(s)	3465, 3497
Alw21I	GWGCWC	6 cut(s)	138, 696, 740, 760, 2110, 2711
Alw26I	GTCTC	5 cut(s)	643, 797, 1911, 2848, 3161
Alw44I	GTGCAC	2 cut(s)	736, 2106
AlwI	GGATC	3 cut(s)	1450, 3674, 4113
AlwNI	CAGNNNCTG	1 cut(s)	2916
Ama87I	CYCGRG	1 cut(s)	3311
ApaI	GGGCCC	1 cut(s)	3421
ApaLI	GTGCAC	2 cut(s)	736, 2106
ApoI	RAATTY	4 cut(s)	1039, 2713, 2880, 4010
ArsI	GACNNNNNNTTYG	4 cut(s)	3812, 3816, 3844, 3848
AseI	ATTAAT	2 cut(s)	360, 3873
Asp700I	GAANNNNTTC	1 cut(s)	4029
Asp718I	GGTACC	1 cut(s)	700
AspLEI	GCGC	7 cut(s)	143, 206, 900, 2831, 2863, 2890, 3466
AsuC2I	CCSGG	1 cut(s)	2652
AsuHPI	GGTGA	9 cut(s)	151, 673, 1748, 2944, 2957, 3067, 3226, 3412, 3599
AsuII	TTCGAA	1 cut(s)	3390
AvaI	CYCGRG	1 cut(s)	3311
AvaII	GGWCC	7 cut(s)	302, 1073, 1246, 1781, 2344, 2935, 3547
BaeGI	GKGCMC	3 cut(s)	740, 2110, 3421
BaeI	ACNNNNGTAYC	2 cut(s)	3915, 3948
BalI	TGGCCA	2 cut(s)	402, 2268
BanI	GGYRCC	5 cut(s)	203, 620, 700, 2522, 3463
BanII	GRGCYC	5 cut(s)	138, 239, 696, 2711, 3421
BarI	GAAGNNNNNNTAC	2 cut(s)	3766, 3798
BauI	CACGAG	2 cut(s)	1866, 2439
BbrPI	CACGTG	1 cut(s)	3012
BbsI	GAAGAC	3 cut(s)	1366, 3365, 4032
Bbv12I	GWGCWC	6 cut(s)	138, 696, 740, 760, 2110, 2711
BceAI	ACGGC	3 cut(s)	396, 2816, 3190
BciT130I	CCWGG	7 cut(s)	1050, 1336, 1734, 2073, 2677, 2839, 3398
BciVI	GTATCC	3 cut(s)	1046, 1664, 3794
BclI	TGATCA	3 cut(s)	781, 3085, 4071
BcnI	CCSGG	1 cut(s)	2652
BcoDI	GTCTC	5 cut(s)	643, 797, 1911, 2848, 3161
BfaI	CTAG	2 cut(s)	1932, 2100
BfmI	CTRYAG	3 cut(s)	1547, 1947, 2622
BfoI	RGCGCY	3 cut(s)	207, 901, 3467
BfrI	CTTAAG	1 cut(s)	2611
BfuI	GTATCC	3 cut(s)	1046, 1664, 3794
BglII	AGATCT	1 cut(s)	2590
Bme1390I	CCNGG	8 cut(s)	1050, 1336, 1734, 2073, 2652, 2677, 2839, 3398
Bme18I	GGWCC	7 cut(s)	302, 1073, 1246, 1781, 2344, 2935, 3547
BmeT110I	CYCGRG	1 cut(s)	3311
BmgBI	CACGTC	1 cut(s)	1811
BmrFI	CCNGG	8 cut(s)	1050, 1336, 1734, 2073, 2652, 2677, 2839, 3398
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	6 cut(s)	805, 1096, 1405, 1542, 3123, 3924
BmuI	ACTGGG	1 cut(s)	699
BoxI	GACNNNNGTC	1 cut(s)	2700
BpiI	GAAGAC	3 cut(s)	1366, 3365, 4032
BpmI	CTGGAG	2 cut(s)	1716, 1728
Bpu10I	CCTNAGC	3 cut(s)	2671, 3192, 4035
Bpu14I	TTCGAA	1 cut(s)	3390
BpuEI	CTTGAG	3 cut(s)	1520, 2334, 3671
BpuMI	CCSGG	1 cut(s)	2652
BsaAI	YACGTR	2 cut(s)	1766, 3012
BsaBI	GATNNNNATC	3 cut(s)	780, 3084, 3090
BsaHI	GRCGYC	5 cut(s)	204, 216, 2356, 2949, 3464
BsaI	GGTCTC	2 cut(s)	2848, 3161
BsaXI	ACNNNNNCTCC	6 cut(s)	146, 176, 567, 597, 4034, 4064
Bsc4I	CCNNNNNNNGG	9 cut(s)	232, 285, 751, 1739, 1790, 2230, 2676, 2838, 2931
Bse1I	ACTGG	8 cut(s)	705, 795, 1249, 2938, 3452, 3589, 3860, 3895
Bse3DI	GCAATG	1 cut(s)	1265
Bse8I	GATNNNNATC	3 cut(s)	780, 3084, 3090
BseBI	CCWGG	7 cut(s)	1050, 1336, 1734, 2073, 2677, 2839, 3398
BseGI	GGATG	9 cut(s)	177, 261, 820, 2174, 2251, 3073, 3082, 3148, 3157
BseJI	GATNNNNATC	3 cut(s)	780, 3084, 3090
BseLI	CCNNNNNNNGG	9 cut(s)	232, 285, 751, 1739, 1790, 2230, 2676, 2838, 2931
BseMI	GCAATG	1 cut(s)	1265
BseMII	CTCAG	6 cut(s)	1046, 1713, 2272, 2696, 3206, 4026
BseNI	ACTGG	8 cut(s)	705, 795, 1249, 2938, 3452, 3589, 3860, 3895
BseSI	GKGCMC	3 cut(s)	740, 2110, 3421
BseX3I	CGGCCG	1 cut(s)	2926
BseYI	CCCAGC	5 cut(s)	597, 1828, 2550, 2854, 3796
BsgI	GTGCAG	4 cut(s)	2135, 2441, 2651, 3176
Bsh1236I	CGCG	8 cut(s)	46, 141, 438, 2829, 2861, 2888, 3471, 3921
Bsh1285I	CGRYCG	2 cut(s)	121, 2929
BshNI	GGYRCC	5 cut(s)	203, 620, 700, 2522, 3463
BsiEI	CGRYCG	2 cut(s)	121, 2929
BsiHKAI	GWGCWC	6 cut(s)	138, 696, 740, 760, 2110, 2711
BsiHKCI	CYCGRG	1 cut(s)	3311
BsiSI	CCGG	4 cut(s)	201, 2651, 2925, 3149
BslFI	GGGAC	6 cut(s)	823, 939, 1259, 1811, 2948, 3818
BslI	CCNNNNNNNGG	9 cut(s)	232, 285, 751, 1739, 1790, 2230, 2676, 2838, 2931
BsmAI	GTCTC	5 cut(s)	643, 797, 1911, 2848, 3161
BsmFI	GGGAC	6 cut(s)	823, 939, 1259, 1811, 2948, 3818
BsmI	GAATGC	1 cut(s)	2073
Bso31I	GGTCTC	2 cut(s)	2848, 3161
BsoBI	CYCGRG	1 cut(s)	3311
Bsp119I	TTCGAA	1 cut(s)	3390
Bsp120I	GGGCCC	1 cut(s)	3417
Bsp1286I	GDGCHC	8 cut(s)	138, 239, 696, 740, 760, 2110, 2711, 3421
Bsp1407I	TGTACA	1 cut(s)	2248
Bsp143I	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
Bsp19I	CCATGG	2 cut(s)	231, 624
Bsp68I	TCGCGA	1 cut(s)	3471
BspCNI	CTCAG	6 cut(s)	1045, 1714, 2271, 2697, 3205, 4027
BspFNI	CGCG	8 cut(s)	46, 141, 438, 2829, 2861, 2888, 3471, 3921
BspHI	TCATGA	2 cut(s)	3559, 4068
BspMAI	CTGCAG	3 cut(s)	1551, 1951, 2626
BspPI	GGATC	3 cut(s)	1450, 3674, 4113
BspT104I	TTCGAA	1 cut(s)	3390
BspT107I	GGYRCC	5 cut(s)	203, 620, 700, 2522, 3463
BspTI	CTTAAG	1 cut(s)	2611
BspTNI	GGTCTC	2 cut(s)	2848, 3161
BsrDI	GCAATG	1 cut(s)	1265
BsrGI	TGTACA	1 cut(s)	2248
BsrI	ACTGG	8 cut(s)	705, 795, 1249, 2938, 3452, 3589, 3860, 3895
BssMI	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
BssNAI	GTATAC	1 cut(s)	1714
BssNI	GRCGYC	5 cut(s)	204, 216, 2356, 2949, 3464
BssSI	CACGAG	2 cut(s)	1866, 2439
BssT1I	CCWWGG	6 cut(s)	231, 305, 384, 624, 1993, 4155
Bst1107I	GTATAC	1 cut(s)	1714
Bst2BI	CACGAG	2 cut(s)	1866, 2439
Bst2UI	CCWGG	7 cut(s)	1050, 1336, 1734, 2073, 2677, 2839, 3398
Bst4CI	ACNGT	7 cut(s)	513, 720, 968, 2171, 2956, 3247, 4094
Bst6I	CTCTTC	9 cut(s)	705, 1282, 1452, 1708, 1757, 2287, 2776, 2824, 3489
BstACI	GRCGYC	5 cut(s)	204, 216, 2356, 2949, 3464
BstAFI	CTTAAG	1 cut(s)	2611
BstAPI	GCANNNNNTGC	3 cut(s)	1602, 1623, 2015
BstAUI	TGTACA	1 cut(s)	2248
BstBAI	YACGTR	2 cut(s)	1766, 3012
BstBI	TTCGAA	1 cut(s)	3390
BstDEI	CTNAG	9 cut(s)	416, 529, 1032, 1722, 2258, 2671, 2705, 3192, 4035
BstDSI	CCRYGG	2 cut(s)	231, 624
BstENI	CCTNNNNNAGG	3 cut(s)	283, 749, 2674
BstF5I	GGATG	9 cut(s)	177, 261, 820, 2174, 2251, 3073, 3082, 3148, 3157
BstFNI	CGCG	8 cut(s)	46, 141, 438, 2829, 2861, 2888, 3471, 3921
BstH2I	RGCGCY	3 cut(s)	207, 901, 3467
BstHHI	GCGC	7 cut(s)	143, 206, 900, 2831, 2863, 2890, 3466
BstKTI	GATC	9 cut(s)	466, 784, 1445, 2593, 3088, 3682, 3886, 4074, 4108
BstMAI	GTCTC	5 cut(s)	643, 797, 1911, 2848, 3161
BstMBI	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
BstMCI	CGRYCG	2 cut(s)	121, 2929
BstNI	CCWGG	7 cut(s)	1050, 1336, 1734, 2073, 2677, 2839, 3398
BstNSI	RCATGY	8 cut(s)	344, 1324, 1465, 1596, 1626, 1681, 1775, 4132
BstPAI	GACNNNNGTC	1 cut(s)	2700
BstSCI	CCNGG	8 cut(s)	1048, 1334, 1732, 2071, 2650, 2675, 2837, 3396
BstSFI	CTRYAG	3 cut(s)	1547, 1947, 2622
BstSLI	GKGCMC	3 cut(s)	740, 2110, 3421
BstUI	CGCG	8 cut(s)	46, 141, 438, 2829, 2861, 2888, 3471, 3921
BstV2I	GAAGAC	3 cut(s)	1366, 3365, 4032
BstX2I	RGATCY	4 cut(s)	1442, 2590, 3679, 4105
BstXI	CCANNNNNNTGG	4 cut(s)	1305, 2144, 2185, 3618
BstYI	RGATCY	4 cut(s)	1442, 2590, 3679, 4105
BstZ17I	GTATAC	1 cut(s)	1714
BstZI	CGGCCG	1 cut(s)	2926
BsuI	GTATCC	3 cut(s)	1046, 1664, 3794
BtgI	CCRYGG	2 cut(s)	231, 624
BtgZI	GCGATG	1 cut(s)	3196
BtrI	CACGTC	1 cut(s)	1811
BtsCI	GGATG	9 cut(s)	177, 261, 820, 2174, 2251, 3073, 3082, 3148, 3157
BtsI	GCAGTG	3 cut(s)	1944, 2631, 3605
BtuMI	TCGCGA	1 cut(s)	3471
CaiI	CAGNNNCTG	1 cut(s)	2916
CciI	TCATGA	2 cut(s)	3559, 4068
CfoI	GCGC	7 cut(s)	143, 206, 900, 2831, 2863, 2890, 3466
CseI	GACGC	4 cut(s)	52, 2364, 2864, 3927
Csp6I	GTAC	4 cut(s)	391, 701, 1763, 2249
CviQI	GTAC	4 cut(s)	391, 701, 1763, 2249
DdeI	CTNAG	9 cut(s)	416, 529, 1032, 1722, 2258, 2671, 2705, 3192, 4035
DinI	GGCGCC	2 cut(s)	205, 3465
DpnI	GATC	9 cut(s)	465, 783, 1444, 2592, 3087, 3681, 3885, 4073, 4107
DpnII	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
DraI	TTTAAA	1 cut(s)	1221
DrdI	GACNNNNNNGTC	2 cut(s)	221, 2954
DseDI	GACNNNNNNGTC	2 cut(s)	221, 2954
EaeI	YGGCCR	4 cut(s)	400, 2266, 2926, 3437
EagI	CGGCCG	1 cut(s)	2926
Eam1104I	CTCTTC	9 cut(s)	705, 1282, 1452, 1708, 1757, 2287, 2776, 2824, 3489
EarI	CTCTTC	9 cut(s)	705, 1282, 1452, 1708, 1757, 2287, 2776, 2824, 3489
Ecl136II	GAGCTC	3 cut(s)	136, 694, 2709
EclXI	CGGCCG	1 cut(s)	2926
Eco130I	CCWWGG	6 cut(s)	231, 305, 384, 624, 1993, 4155
Eco147I	AGGCCT	1 cut(s)	1759
Eco24I	GRGCYC	5 cut(s)	138, 239, 696, 2711, 3421
Eco31I	GGTCTC	2 cut(s)	2848, 3161
Eco47I	GGWCC	7 cut(s)	302, 1073, 1246, 1781, 2344, 2935, 3547
Eco52I	CGGCCG	1 cut(s)	2926
Eco53kI	GAGCTC	3 cut(s)	136, 694, 2709
Eco57I	CTGAAG	5 cut(s)	268, 452, 1738, 2268, 3680
Eco72I	CACGTG	1 cut(s)	3012
Eco88I	CYCGRG	1 cut(s)	3311
EcoICRI	GAGCTC	3 cut(s)	136, 694, 2709
EcoNI	CCTNNNNNAGG	3 cut(s)	283, 749, 2674
EcoO109I	RGGNCCY	6 cut(s)	1073, 1781, 2344, 2607, 3418, 3547
EcoRI	GAATTC	2 cut(s)	2713, 2880
EcoRII	CCWGG	7 cut(s)	1048, 1334, 1732, 2071, 2675, 2837, 3396
EcoT14I	CCWWGG	6 cut(s)	231, 305, 384, 624, 1993, 4155
EcoT22I	ATGCAT	1 cut(s)	1420
EcoT38I	GRGCYC	5 cut(s)	138, 239, 696, 2711, 3421
EgeI	GGCGCC	2 cut(s)	205, 3465
EheI	GGCGCC	2 cut(s)	205, 3465
ErhI	CCWWGG	6 cut(s)	231, 305, 384, 624, 1993, 4155
FalI	AAGNNNNNCTT	6 cut(s)	577, 609, 627, 659, 1374, 1406
FaqI	GGGAC	6 cut(s)	823, 939, 1259, 1811, 2948, 3818
FauI	CCCGC	4 cut(s)	278, 2465, 2855, 3408
FbaI	TGATCA	3 cut(s)	781, 3085, 4071
FblI	GTMKAC	2 cut(s)	1713, 3645
FokI	GGATG	9 cut(s)	164, 248, 827, 2161, 2258, 3080, 3089, 3155, 3164
FriOI	GRGCYC	5 cut(s)	138, 239, 696, 2711, 3421
FspBI	CTAG	2 cut(s)	1932, 2100
GlaI	GCGC	7 cut(s)	142, 205, 899, 2830, 2862, 2889, 3465
GsaI	CCCAGC	5 cut(s)	601, 1832, 2554, 2858, 3800
GsuI	CTGGAG	2 cut(s)	1716, 1728
HaeII	RGCGCY	3 cut(s)	207, 901, 3467
HapII	CCGG	4 cut(s)	201, 2651, 2925, 3149
HgaI	GACGC	4 cut(s)	52, 2364, 2864, 3927
HhaI	GCGC	7 cut(s)	143, 206, 900, 2831, 2863, 2890, 3466
Hin1I	GRCGYC	5 cut(s)	204, 216, 2356, 2949, 3464
Hin6I	GCGC	7 cut(s)	141, 204, 898, 2829, 2861, 2888, 3464
HinP1I	GCGC	7 cut(s)	141, 204, 898, 2829, 2861, 2888, 3464
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HindIII	AAGCTT	1 cut(s)	413
HpaII	CCGG	4 cut(s)	201, 2651, 2925, 3149
HphI	GGTGA	9 cut(s)	151, 673, 1748, 2944, 2957, 3067, 3226, 3412, 3599
Hpy166II	GTNNAC	8 cut(s)	516, 738, 976, 1714, 2108, 2251, 3590, 3646
Hpy8I	GTNNAC	8 cut(s)	516, 738, 976, 1714, 2108, 2251, 3590, 3646
HpyCH4III	ACNGT	7 cut(s)	513, 720, 968, 2171, 2956, 3247, 4094
HpyCH4IV	ACGT	9 cut(s)	216, 665, 1765, 1810, 2386, 2949, 3011, 3642, 3990
HpyF3I	CTNAG	9 cut(s)	416, 529, 1032, 1722, 2258, 2671, 2705, 3192, 4035
HpySE526I	ACGT	9 cut(s)	216, 665, 1765, 1810, 2386, 2949, 3011, 3642, 3990
Hsp92I	GRCGYC	5 cut(s)	204, 216, 2356, 2949, 3464
HspAI	GCGC	7 cut(s)	141, 204, 898, 2829, 2861, 2888, 3464
KasI	GGCGCC	2 cut(s)	203, 3463
KpnI	GGTACC	1 cut(s)	704
Ksp22I	TGATCA	3 cut(s)	781, 3085, 4071
Kzo9I	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
LweI	GCATC	6 cut(s)	805, 1096, 1405, 1542, 3123, 3924
MaeI	CTAG	2 cut(s)	1932, 2100
MaeII	ACGT	9 cut(s)	216, 665, 1765, 1810, 2386, 2949, 3011, 3642, 3990
MalI	GATC	9 cut(s)	465, 783, 1444, 2592, 3087, 3681, 3885, 4073, 4107
MboI	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
MfeI	CAATTG	4 cut(s)	372, 3062, 3380, 4169
MflI	RGATCY	4 cut(s)	1442, 2590, 3679, 4105
MhlI	GDGCHC	8 cut(s)	138, 239, 696, 740, 760, 2110, 2711, 3421
MlsI	TGGCCA	2 cut(s)	402, 2268
MluNI	TGGCCA	2 cut(s)	402, 2268
Mly113I	GGCGCC	2 cut(s)	204, 3464
MlyI	GAGTC	5 cut(s)	1733, 2135, 2250, 3437, 3899
MmeI	TCCRAC	6 cut(s)	135, 237, 1129, 1871, 2813, 3330
Mox20I	TGGCCA	2 cut(s)	402, 2268
Mph1103I	ATGCAT	1 cut(s)	1420
MroXI	GAANNNNTTC	1 cut(s)	4029
MscI	TGGCCA	2 cut(s)	402, 2268
MslI	CAYNNNNRTG	3 cut(s)	345, 2957, 3616
Msp20I	TGGCCA	2 cut(s)	402, 2268
MspA1I	CMGCKG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	2611
MspI	CCGG	4 cut(s)	201, 2651, 2925, 3149
MspR9I	CCNGG	8 cut(s)	1050, 1336, 1734, 2073, 2652, 2677, 2839, 3398
MunI	CAATTG	4 cut(s)	372, 3062, 3380, 4169
Mva1269I	GAATGC	1 cut(s)	2073
MvaI	CCWGG	7 cut(s)	1050, 1336, 1734, 2073, 2677, 2839, 3398
MvnI	CGCG	8 cut(s)	46, 141, 438, 2829, 2861, 2888, 3471, 3921
NarI	GGCGCC	2 cut(s)	204, 3464
NciI	CCSGG	1 cut(s)	2652
NcoI	CCATGG	2 cut(s)	231, 624
NdeII	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
NmeAIII	GCCGAG	2 cut(s)	2954, 3348
NmuCI	GTSAC	4 cut(s)	331, 2207, 2945, 2950
NruI	TCGCGA	1 cut(s)	3471
NsiI	ATGCAT	1 cut(s)	1420
NspI	RCATGY	8 cut(s)	344, 1324, 1465, 1596, 1626, 1681, 1775, 4132
NspV	TTCGAA	1 cut(s)	3390
PaeI	GCATGC	2 cut(s)	1324, 1626
PagI	TCATGA	2 cut(s)	3559, 4068
PceI	AGGCCT	1 cut(s)	1759
PciI	ACATGT	2 cut(s)	340, 1461
PcsI	WCGNNNNNNNCGW	4 cut(s)	386, 2798, 3107, 3918
PctI	GAATGC	1 cut(s)	2073
PdmI	GAANNNNTTC	1 cut(s)	4029
PleI	GAGTC	5 cut(s)	1732, 2134, 2250, 3436, 3899
PluTI	GGCGCC	2 cut(s)	207, 3467
PmaCI	CACGTG	1 cut(s)	3012
PmlI	CACGTG	1 cut(s)	3012
PpsI	GAGTC	5 cut(s)	1732, 2134, 2250, 3436, 3899
Ppu21I	YACGTR	2 cut(s)	1766, 3012
PpuMI	RGGWCCY	4 cut(s)	1073, 1781, 2344, 3547
PscI	ACATGT	2 cut(s)	340, 1461
PshAI	GACNNNNGTC	1 cut(s)	2700
PshBI	ATTAAT	2 cut(s)	360, 3873
PsiI	TTATAA	1 cut(s)	3762
Psp124BI	GAGCTC	3 cut(s)	138, 696, 2711
Psp1406I	AACGTT	1 cut(s)	665
Psp5II	RGGWCCY	4 cut(s)	1073, 1781, 2344, 3547
Psp6I	CCWGG	7 cut(s)	1048, 1334, 1732, 2071, 2675, 2837, 3396
PspCI	CACGTG	1 cut(s)	3012
PspFI	CCCAGC	5 cut(s)	597, 1828, 2550, 2854, 3796
PspGI	CCWGG	7 cut(s)	1048, 1334, 1732, 2071, 2675, 2837, 3396
PspOMI	GGGCCC	1 cut(s)	3417
PspPPI	RGGWCCY	4 cut(s)	1073, 1781, 2344, 3547
PstI	CTGCAG	3 cut(s)	1551, 1951, 2626
PstNI	CAGNNNCTG	1 cut(s)	2916
PsuI	RGATCY	4 cut(s)	1442, 2590, 3679, 4105
RruI	TCGCGA	1 cut(s)	3471
RsaI	GTAC	4 cut(s)	392, 702, 1764, 2250
RsaNI	GTAC	4 cut(s)	391, 701, 1763, 2249
RseI	CAYNNNNRTG	3 cut(s)	345, 2957, 3616
SacI	GAGCTC	3 cut(s)	138, 696, 2711
Sau3AI	GATC	9 cut(s)	463, 781, 1442, 2590, 3085, 3679, 3883, 4071, 4105
SchI	GAGTC	5 cut(s)	1733, 2135, 2250, 3437, 3899
ScrFI	CCNGG	8 cut(s)	1050, 1336, 1734, 2073, 2652, 2677, 2839, 3398
SduI	GDGCHC	8 cut(s)	138, 239, 696, 740, 760, 2110, 2711, 3421
SfaNI	GCATC	6 cut(s)	805, 1096, 1405, 1542, 3123, 3924
SfcI	CTRYAG	3 cut(s)	1547, 1947, 2622
SfoI	GGCGCC	2 cut(s)	205, 3465
SfuI	TTCGAA	1 cut(s)	3390
SinI	GGWCC	7 cut(s)	302, 1073, 1246, 1781, 2344, 2935, 3547
SmiI	ATTTAAAT	1 cut(s)	1221
SmiMI	CAYNNNNRTG	3 cut(s)	345, 2957, 3616
SmlI	CTYRAG	4 cut(s)	1499, 2349, 2611, 3650
SmoI	CTYRAG	4 cut(s)	1499, 2349, 2611, 3650
SphI	GCATGC	2 cut(s)	1324, 1626
SseBI	AGGCCT	1 cut(s)	1759
SspDI	GGCGCC	2 cut(s)	203, 3463
SspI	AATATT	2 cut(s)	358, 3828
SspMI	CTAG	2 cut(s)	1932, 2100
SstI	GAGCTC	3 cut(s)	138, 696, 2711
StuI	AGGCCT	1 cut(s)	1759
StyD4I	CCNGG	8 cut(s)	1048, 1334, 1732, 2071, 2650, 2675, 2837, 3396
StyI	CCWWGG	6 cut(s)	231, 305, 384, 624, 1993, 4155
SwaI	ATTTAAAT	1 cut(s)	1221
TaaI	ACNGT	7 cut(s)	513, 720, 968, 2171, 2956, 3247, 4094
TaiI	ACGT	9 cut(s)	219, 668, 1768, 1813, 2389, 2952, 3014, 3645, 3993
TaqII	GACCGA	1 cut(s)	200
TatI	WGTACW	1 cut(s)	2248
TauI	GCSGC	6 cut(s)	61, 132, 1838, 2861, 2977, 3439
TseFI	GTSAC	4 cut(s)	331, 2207, 2945, 2950
Tsp45I	GTSAC	4 cut(s)	331, 2207, 2945, 2950
TspGWI	ACGGA	2 cut(s)	827, 2071
Vha464I	CTTAAG	1 cut(s)	2611
VneI	GTGCAC	2 cut(s)	736, 2106
VpaK11BI	GGWCC	7 cut(s)	302, 1073, 1246, 1781, 2344, 2935, 3547
VspI	ATTAAT	2 cut(s)	360, 3873
XagI	CCTNNNNNAGG	3 cut(s)	283, 749, 2674
XapI	RAATTY	4 cut(s)	1039, 2713, 2880, 4010
XceI	RCATGY	8 cut(s)	344, 1324, 1465, 1596, 1626, 1681, 1775, 4132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1836
XmiI	GTMKAC	2 cut(s)	1713, 3645
XmnI	GAANNNNTTC	1 cut(s)	4029
XspI	CTAG	2 cut(s)	1932, 2100
ZraI	GACGTC	2 cut(s)	217, 2950
Zsp2I	ATGCAT	1 cut(s)	1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.