Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

45695828 .. 45701127

Gene Structure 5300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGGAAGCTAACTACGCTAACAACCAAGCGACGCGGTGCTTCGGCCCGCAGATGAAAATGACGATTCAGCCCTCGCAGCAGCAGCACTCCGACAACGACCGCAGCAGCGGCGAGCTCCGCGCCCTCGACTGCAACCTCACCTCCCTCTGCGACCACATCCAGACCGAAGGCTTCAACTCCGGCGCCTTCTCCGACGTCGTCGTCCACGCCATGGGCTCCACCTACCACCTCCACCGCCTCATCCTCTCCCGCAGCCCCTACTTCAGGAATATGCTTCATGGACCTTGGAAAGAAGCCAATGCTCCCATTGTGACATTACATGTAGATGATAAGAATATTAATGCAGAGGCAATTGCAACGGCCTTGGCGTACTTGTATGGCCACCACCCCAAGCTTAGTGATACCAATGCCTTTCGCGTTCTTGCTGCTGCTTCTTTTCTTGATCTTCAGGATTTATGTGCTATATGCACTGACTTCATTATATCGGAACTATGGACTTCAAACTTCTTAGCCTATCAGGTGTTTGCGGAGGGGCAAGATTATGGCATACATGGAGAACGGGTAAGAAATGCTTGCTGGGGCTACCTTTCTCAAAGCGGTGCCATGGAGTTGAAAGAGGTGCTTCCGAGACTTTCTTCCCAAACGTTGCTTGCATTACTCACCTCTGACGAGCTCTGGGTACCCAGTGAAGAGAAACGGTTTGAACTGGCATTGTGCACATTCCTTTCAAAGGGTGCTCAATGCAAACAGGAAGATTATGATCATGGAAGTTCCAGTTCGGAGACAGGGACGGATGCACATTCCGATTCGTCTAAATCAAAGGGAAAGAATCTGACTGATAGCTTCACTAATAAAAGGTTGGAGTCTGAATTGGGGCGCTTAACTCTAAAAGATGATTTAGAGGGACATAATACAGCTCGTAACCTTCTGATAGAGCTTGCAGACTGTGTAGTTGACTTCCAAACAGGAGGTTCAAATGCCAAACAGCAAGTGCAACAAGTTGCTTACCCTCAGTCAAATTTTGAGCCAGGATACAACTGCAGCATGGGAGGTCCTTCATCATTTAATACATTTTCAGACATAGATGCAATTAGAACTTCATGTTATGCCGAAATGCCTATTGGTGTTGGAGGAAGTAGATTGGGGGAAAATGGAGGGGCTATGGAGGGGCCATCTGATGAAGAGTCATGCTACCATTTAAATAACAATAGTTGGCTTGGTAGGGACCAGTCAAGGCAATGCTCATCAATGAACTCTTCAAGTAGTGAGCTAATGCCAAATGATTGGGGAAGATGTGGCATGCCTCCTCTAACCTGGGGTGGCAGGGTTGTAGGCAGAAGACAACTTAAAGGTTATGGTAAAGGAGAACTTGGGTTTGCTGGGGAGGAATATGATGCATTTGTAAATATATTTGAAGGAGGATCTCTTCTATACTGCAACATGTCTTTTGAGGCACTTTTGAATGTAAGAAAGCAACTTGAGGAAATGGGGTTTCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTTTGAGCCAGAGAGTTCAAGAAATTGGTGCCGATACATGCAAAAGTTGCTGTCTAACAAGCATAGCATGCAGTTGCAGACAGCCATTTTCGTTCTCACATGGAGGTACCACTGGATACTACATGCAAGAGCATAATCAGAGTAACTCTTCTGGAGTATACATCACTGAGTCTGCTCCAGGTGAAGGTAATGGGCTCTTCAGGCCTGTACGTGTGCATGTCAGGGGTCCTATTGATGGGCTTGCTGGTATTGGACGTGGAACCACATTTGTGCCAGCAGCCGCTTGGCCTCCAACTCGGTTCGTCTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTGCCAGCAGTCTCTTGCTAATGATGATTCAGAGGCTAGAGCTGACCACACTGCAGAGCTTTCAGGAGATGGATTGACAGCTTTGGTTGGGCTAAGCCAAGGAGGTAACAATGCAGCTAATGCTCATGTAGAGCAAACAGAGAGGGGCTATGAGATGGATATGCAAAGCCGAATGCCTGGAACTTCCATGTCAGTGCCAAGTTCAAGTGGTGCACCTGTGCAGATGGTAGAGTCATCAGACCAAGCACTTGGGATTGAGTGGGATAATGCAAACAGTTCCTCCATATCATTGGATATGAAAACACCTTTAAGTCACTTCCCTCCATTCCGCTTTGGGGTGCAATTTGAGGATGTACACAGACTCAGTGATGGCCAAGTCAAGCACTCTTCAGAAGTTTTTTATGCTGGTTCTCTGTGGAAGGTTAGCGTTCAGGCTTTTAATGATGAGGACCCTCAAGGACGCCGAACACTTGGATTATTTCTCCACCGACGTAAGGCTGAGATTACCGACCCGTATAGAAAGGTGCAGATGTATGTCGATTCTCGTGAAAAGGTTACTGCCCGCTACCAGCTAATATGTCCATCAAAGAGGGAAGTCATGGTGTTTGGAAGCTACAAGCAAACAGGCACCCTTTTACCAAAAGCTCCCAAGGGCTGGGGCTGGCGAACAGCTCTGTTATTTGATGAACTTTCCGATCTTCTTCAAAATGGGGCCTTAAGAGTGGCTGCTGTGGTGCAGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

873

Amino Acids

95.97

Weight (kDa)

5.51

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	58 - 162	3.9e-15	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	198
Acc65I	GGTACC	2 cut(s)	679, 1640
AccB1I	GGYRCC	6 cut(s)	182, 599, 679, 1562, 1640, 2501
AccB7I	CCANNNNNTGG	2 cut(s)	211, 2529
AccI	GTMKAC	1 cut(s)	1692
AccII	CGCG	3 cut(s)	34, 120, 417
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	1 cut(s)	1429
AcoI	YGGCCR	2 cut(s)	379, 2245
AcsI	RAATTY	1 cut(s)	1018
AcuI	CTGAAG	4 cut(s)	247, 431, 1717, 2247
AcyI	GRCGYC	3 cut(s)	183, 195, 2335
AfaI	GTAC	5 cut(s)	371, 681, 1642, 1743, 2229
AfiI	CCNNNNNNNGG	8 cut(s)	211, 264, 730, 1718, 1769, 2209, 2368, 2529
AflII	CTTAAG	1 cut(s)	2590
AflIII	ACRYGT	3 cut(s)	319, 1440, 1744
AjiI	CACGTC	1 cut(s)	1790
AjnI	CCWGG	4 cut(s)	1027, 1313, 1711, 2050
AjuI	GAANNNNNNNTTGG	2 cut(s)	1104, 1136
AleI	CACNNNNGTG	1 cut(s)	1802
Alw21I	GWGCWC	5 cut(s)	117, 675, 719, 739, 2089
Alw26I	GTCTC	3 cut(s)	622, 776, 1890
Alw44I	GTGCAC	2 cut(s)	715, 2085
AlwI	GGATC	1 cut(s)	1429
AoxI	GGCC	8 cut(s)	43, 360, 379, 1169, 1736, 1820, 2245, 2586
ApaLI	GTGCAC	2 cut(s)	715, 2085
ApoI	RAATTY	1 cut(s)	1018
AseI	ATTAAT	1 cut(s)	339
Asp718I	GGTACC	2 cut(s)	679, 1640
AspLEI	GCGC	3 cut(s)	122, 185, 879
AspS9I	GGNCC	8 cut(s)	44, 281, 1052, 1169, 1225, 1760, 2323, 2586
AsuHPI	GGTGA	3 cut(s)	130, 652, 1727
AvaII	GGWCC	5 cut(s)	281, 1052, 1225, 1760, 2323
BaeGI	GKGCMC	2 cut(s)	719, 2089
BalI	TGGCCA	2 cut(s)	381, 2247
BanI	GGYRCC	6 cut(s)	182, 599, 679, 1562, 1640, 2501
BanII	GRGCYC	4 cut(s)	117, 218, 675, 1731
BauI	CACGAG	2 cut(s)	1845, 2418
BbsI	GAAGAC	1 cut(s)	1345
Bbv12I	GWGCWC	5 cut(s)	117, 675, 719, 739, 2089
BccI	CCATC	8 cut(s)	1180, 1508, 1763, 1937, 2023, 2092, 2237, 2464
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	4 cut(s)	1029, 1315, 1713, 2052
BciVI	GTATCC	2 cut(s)	1025, 1643
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	3 cut(s)	622, 776, 1890
BfaI	CTAG	1 cut(s)	1911
BfmI	CTRYAG	3 cut(s)	1039, 1526, 1926
BfoI	RGCGCY	2 cut(s)	186, 880
BfrI	CTTAAG	1 cut(s)	2590
BfuI	GTATCC	2 cut(s)	1025, 1643
BlpI	GCTNAGC	1 cut(s)	1967
Bme1390I	CCNGG	4 cut(s)	1029, 1315, 1713, 2052
Bme18I	GGWCC	5 cut(s)	281, 1052, 1225, 1760, 2323
BmgBI	CACGTC	1 cut(s)	1790
BmgT120I	GGNCC	8 cut(s)	44, 281, 1052, 1169, 1225, 1760, 2323, 2586
BmrFI	CCNGG	4 cut(s)	1029, 1315, 1713, 2052
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	4 cut(s)	784, 1075, 1384, 1521
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	1345
BpmI	CTGGAG	2 cut(s)	1695, 1707
Bpu1102I	GCTNAGC	1 cut(s)	1967
BpuEI	CTTGAG	2 cut(s)	1499, 2313
BsaAI	YACGTR	1 cut(s)	1745
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	3 cut(s)	183, 195, 2335
BsaJI	CCNNGG	7 cut(s)	210, 284, 363, 603, 1314, 1972, 2523
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 546, 576, 2138, 2168
Bsc4I	CCNNNNNNNGG	8 cut(s)	211, 264, 730, 1718, 1769, 2209, 2368, 2529
Bse1I	ACTGG	5 cut(s)	684, 711, 774, 1228, 1651
Bse3DI	GCAATG	1 cut(s)	1244
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	4 cut(s)	1029, 1315, 1713, 2052
BseDI	CCNNGG	7 cut(s)	210, 284, 363, 603, 1314, 1972, 2523
BseGI	GGATG	4 cut(s)	156, 240, 799, 2230
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	8 cut(s)	211, 264, 730, 1718, 1769, 2209, 2368, 2529
BseMI	GCAATG	1 cut(s)	1244
BseMII	CTCAG	4 cut(s)	1025, 1692, 2251, 2364
BseNI	ACTGG	5 cut(s)	684, 711, 774, 1228, 1651
BseRI	GAGGAG	1 cut(s)	1296
BseSI	GKGCMC	2 cut(s)	719, 2089
BseYI	CCCAGC	3 cut(s)	576, 1379, 2529
BsgI	GTGCAG	2 cut(s)	2114, 2420
Bsh1236I	CGCG	3 cut(s)	34, 120, 417
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	8 cut(s)	45, 362, 381, 1171, 1738, 1822, 2247, 2588
BshNI	GGYRCC	6 cut(s)	182, 599, 679, 1562, 1640, 2501
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	5 cut(s)	117, 675, 719, 739, 2089
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	3 cut(s)	802, 918, 1238
BslI	CCNNNNNNNGG	8 cut(s)	211, 264, 730, 1718, 1769, 2209, 2368, 2529
BsmAI	GTCTC	3 cut(s)	622, 776, 1890
BsmFI	GGGAC	3 cut(s)	802, 918, 1238
BsmI	GAATGC	1 cut(s)	2052
BsnI	GGCC	8 cut(s)	45, 362, 381, 1171, 1738, 1822, 2247, 2588
Bsp1286I	GDGCHC	7 cut(s)	117, 218, 675, 719, 739, 1731, 2089
Bsp1407I	TGTACA	1 cut(s)	2227
Bsp143I	GATC	4 cut(s)	442, 760, 1421, 2569
Bsp1720I	GCTNAGC	1 cut(s)	1967
Bsp19I	CCATGG	2 cut(s)	210, 603
BspANI	GGCC	8 cut(s)	45, 362, 381, 1171, 1738, 1822, 2247, 2588
BspCNI	CTCAG	4 cut(s)	1024, 1693, 2250, 2365
BspFNI	CGCG	3 cut(s)	34, 120, 417
BspMAI	CTGCAG	3 cut(s)	1043, 1530, 1930
BspPI	GGATC	1 cut(s)	1429
BspQI	GCTCTTC	1 cut(s)	1736
BspT107I	GGYRCC	6 cut(s)	182, 599, 679, 1562, 1640, 2501
BspTI	CTTAAG	1 cut(s)	2590
BsrDI	GCAATG	1 cut(s)	1244
BsrGI	TGTACA	1 cut(s)	2227
BsrI	ACTGG	5 cut(s)	684, 711, 774, 1228, 1651
BssECI	CCNNGG	7 cut(s)	210, 284, 363, 603, 1314, 1972, 2523
BssMI	GATC	4 cut(s)	442, 760, 1421, 2569
BssNAI	GTATAC	1 cut(s)	1693
BssNI	GRCGYC	3 cut(s)	183, 195, 2335
BssSI	CACGAG	2 cut(s)	1845, 2418
BssT1I	CCWWGG	6 cut(s)	210, 284, 363, 603, 1972, 2523
Bst1107I	GTATAC	1 cut(s)	1693
Bst2BI	CACGAG	2 cut(s)	1845, 2418
Bst2UI	CCWGG	4 cut(s)	1029, 1315, 1713, 2052
Bst4CI	ACNGT	3 cut(s)	699, 947, 2150
Bst6I	CTCTTC	7 cut(s)	684, 1176, 1261, 1431, 1687, 1736, 2266
BstACI	GRCGYC	3 cut(s)	183, 195, 2335
BstAFI	CTTAAG	1 cut(s)	2590
BstAPI	GCANNNNNTGC	3 cut(s)	1581, 1602, 1994
BstAUI	TGTACA	1 cut(s)	2227
BstBAI	YACGTR	1 cut(s)	1745
BstDEI	CTNAG	7 cut(s)	395, 508, 1011, 1701, 1967, 2237, 2373
BstDSI	CCRYGG	2 cut(s)	210, 603
BstENI	CCTNNNNNAGG	2 cut(s)	262, 728
BstF5I	GGATG	4 cut(s)	156, 240, 799, 2230
BstFNI	CGCG	3 cut(s)	34, 120, 417
BstH2I	RGCGCY	2 cut(s)	186, 880
BstHHI	GCGC	3 cut(s)	122, 185, 879
BstKTI	GATC	4 cut(s)	445, 763, 1424, 2572
BstMAI	GTCTC	3 cut(s)	622, 776, 1890
BstMBI	GATC	4 cut(s)	442, 760, 1421, 2569
BstMCI	CGRYCG	1 cut(s)	100
BstNI	CCWGG	4 cut(s)	1029, 1315, 1713, 2052
BstNSI	RCATGY	7 cut(s)	323, 1303, 1444, 1575, 1605, 1660, 1754
BstSCI	CCNGG	4 cut(s)	1027, 1313, 1711, 2050
BstSFI	CTRYAG	3 cut(s)	1039, 1526, 1926
BstSLI	GKGCMC	2 cut(s)	719, 2089
BstUI	CGCG	3 cut(s)	34, 120, 417
BstV2I	GAAGAC	1 cut(s)	1345
BstX2I	RGATCY	1 cut(s)	1421
BstXI	CCANNNNNNTGG	3 cut(s)	1284, 2123, 2164
BstYI	RGATCY	1 cut(s)	1421
BstZ17I	GTATAC	1 cut(s)	1693
BsuI	GTATCC	2 cut(s)	1025, 1643
BsuRI	GGCC	8 cut(s)	45, 362, 381, 1171, 1738, 1822, 2247, 2588
BtgI	CCRYGG	2 cut(s)	210, 603
BtrI	CACGTC	1 cut(s)	1790
BtsCI	GGATG	4 cut(s)	156, 240, 799, 2230
BtsI	GCAGTG	1 cut(s)	1923
BtsIMutI	CAGTG	7 cut(s)	468, 691, 1644, 1698, 1923, 2073, 2245
CfoI	GCGC	3 cut(s)	122, 185, 879
Cfr13I	GGNCC	8 cut(s)	44, 281, 1052, 1169, 1225, 1760, 2323, 2586
CseI	GACGC	2 cut(s)	40, 2343
Csp6I	GTAC	5 cut(s)	370, 680, 1641, 1742, 2228
CviQI	GTAC	5 cut(s)	370, 680, 1641, 1742, 2228
DdeI	CTNAG	7 cut(s)	395, 508, 1011, 1701, 1967, 2237, 2373
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	4 cut(s)	444, 762, 1423, 2571
DpnII	GATC	4 cut(s)	442, 760, 1421, 2569
DraI	TTTAAA	1 cut(s)	1200
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	379, 2245
Eam1104I	CTCTTC	7 cut(s)	684, 1176, 1261, 1431, 1687, 1736, 2266
EarI	CTCTTC	7 cut(s)	684, 1176, 1261, 1431, 1687, 1736, 2266
Ecl136II	GAGCTC	2 cut(s)	115, 673
Eco130I	CCWWGG	6 cut(s)	210, 284, 363, 603, 1972, 2523
Eco147I	AGGCCT	1 cut(s)	1738
Eco24I	GRGCYC	4 cut(s)	117, 218, 675, 1731
Eco47I	GGWCC	5 cut(s)	281, 1052, 1225, 1760, 2323
Eco53kI	GAGCTC	2 cut(s)	115, 673
Eco57I	CTGAAG	4 cut(s)	247, 431, 1717, 2247
EcoICRI	GAGCTC	2 cut(s)	115, 673
EcoNI	CCTNNNNNAGG	2 cut(s)	262, 728
EcoO109I	RGGNCCY	4 cut(s)	1052, 1760, 2323, 2586
EcoRII	CCWGG	4 cut(s)	1027, 1313, 1711, 2050
EcoT14I	CCWWGG	6 cut(s)	210, 284, 363, 603, 1972, 2523
EcoT22I	ATGCAT	1 cut(s)	1399
EcoT38I	GRGCYC	4 cut(s)	117, 218, 675, 1731
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	6 cut(s)	210, 284, 363, 603, 1972, 2523
FalI	AAGNNNNNCTT	6 cut(s)	556, 588, 606, 638, 1353, 1385
FaqI	GGGAC	3 cut(s)	802, 918, 1238
FauI	CCCGC	3 cut(s)	54, 257, 2444
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	1692
FokI	GGATG	4 cut(s)	143, 227, 806, 2237
FriOI	GRGCYC	4 cut(s)	117, 218, 675, 1731
FspBI	CTAG	1 cut(s)	1911
GlaI	GCGC	3 cut(s)	121, 184, 878
GsaI	CCCAGC	3 cut(s)	580, 1383, 2533
GsuI	CTGGAG	2 cut(s)	1695, 1707
HaeII	RGCGCY	2 cut(s)	186, 880
HaeIII	GGCC	8 cut(s)	45, 362, 381, 1171, 1738, 1822, 2247, 2588
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	2 cut(s)	40, 2343
HhaI	GCGC	3 cut(s)	122, 185, 879
Hin1I	GRCGYC	3 cut(s)	183, 195, 2335
Hin6I	GCGC	3 cut(s)	120, 183, 877
HinP1I	GCGC	3 cut(s)	120, 183, 877
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	392
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	130, 652, 1727
Hpy166II	GTNNAC	6 cut(s)	205, 717, 955, 1693, 2087, 2230
Hpy188III	TCNNGA	8 cut(s)	160, 265, 440, 449, 1553, 1686, 1938, 2420
Hpy8I	GTNNAC	6 cut(s)	205, 717, 955, 1693, 2087, 2230
Hpy99I	CGWCG	5 cut(s)	34, 197, 200, 203, 2367
HpyAV	CCTTC	7 cut(s)	161, 196, 935, 1065, 1409, 1712, 2287
HpyCH4III	ACNGT	3 cut(s)	699, 947, 2150
HpyCH4IV	ACGT	5 cut(s)	195, 644, 1744, 1789, 2365
HpyF3I	CTNAG	7 cut(s)	395, 508, 1011, 1701, 1967, 2237, 2373
HpySE526I	ACGT	5 cut(s)	195, 644, 1744, 1789, 2365
Hsp92I	GRCGYC	3 cut(s)	183, 195, 2335
HspAI	GCGC	3 cut(s)	120, 183, 877
KasI	GGCGCC	1 cut(s)	182
KpnI	GGTACC	2 cut(s)	683, 1644
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	4 cut(s)	442, 760, 1421, 2569
LguI	GCTCTTC	1 cut(s)	1736
LmnI	GCTCC	5 cut(s)	120, 221, 307, 1714, 2524
LweI	GCATC	4 cut(s)	784, 1075, 1384, 1521
MaeI	CTAG	1 cut(s)	1911
MaeII	ACGT	5 cut(s)	195, 644, 1744, 1789, 2365
MaeIII	GTNAC	6 cut(s)	310, 920, 1676, 1979, 2186, 2428
MalI	GATC	4 cut(s)	444, 762, 1423, 2571
MboI	GATC	4 cut(s)	442, 760, 1421, 2569
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	1421
MhlI	GDGCHC	7 cut(s)	117, 218, 675, 719, 739, 1731, 2089
MlsI	TGGCCA	2 cut(s)	381, 2247
MluCI	AATT	7 cut(s)	351, 869, 1018, 1089, 1557, 1873, 2216
MluNI	TGGCCA	2 cut(s)	381, 2247
Mly113I	GGCGCC	1 cut(s)	183
MlyI	GAGTC	5 cut(s)	872, 1193, 1712, 2114, 2229
MmeI	TCCRAC	5 cut(s)	114, 216, 840, 1108, 1850
Mox20I	TGGCCA	2 cut(s)	381, 2247
Mph1103I	ATGCAT	1 cut(s)	1399
MscI	TGGCCA	2 cut(s)	381, 2247
MseI	TTAA	8 cut(s)	339, 881, 1065, 1199, 1347, 2183, 2313, 2591
MslI	CAYNNNNRTG	3 cut(s)	324, 1802, 2066
Msp20I	TGGCCA	2 cut(s)	381, 2247
MspA1I	CMGCKG	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	2590
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	4 cut(s)	1029, 1315, 1713, 2052
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	2052
MvaI	CCWGG	4 cut(s)	1029, 1315, 1713, 2052
MvnI	CGCG	3 cut(s)	34, 120, 417
NarI	GGCGCC	1 cut(s)	183
NcoI	CCATGG	2 cut(s)	210, 603
NdeII	GATC	4 cut(s)	442, 760, 1421, 2569
NmuCI	GTSAC	2 cut(s)	310, 2186
NsiI	ATGCAT	1 cut(s)	1399
NspI	RCATGY	7 cut(s)	323, 1303, 1444, 1575, 1605, 1660, 1754
OliI	CACNNNNGTG	1 cut(s)	1802
PaeI	GCATGC	2 cut(s)	1303, 1605
PceI	AGGCCT	1 cut(s)	1738
PciI	ACATGT	2 cut(s)	319, 1440
PciSI	GCTCTTC	1 cut(s)	1736
PcsI	WCGNNNNNNNCGW	1 cut(s)	365
PctI	GAATGC	1 cut(s)	2052
PfeI	GAWTC	5 cut(s)	64, 806, 829, 1901, 2414
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	2 cut(s)	211, 2529
PleI	GAGTC	5 cut(s)	871, 1192, 1711, 2113, 2229
PluTI	GGCGCC	1 cut(s)	186
PpsI	GAGTC	5 cut(s)	871, 1192, 1711, 2113, 2229
Ppu21I	YACGTR	1 cut(s)	1745
PpuMI	RGGWCCY	3 cut(s)	1052, 1760, 2323
PscI	ACATGT	2 cut(s)	319, 1440
PshBI	ATTAAT	1 cut(s)	339
Psp124BI	GAGCTC	2 cut(s)	117, 675
Psp1406I	AACGTT	1 cut(s)	644
Psp5II	RGGWCCY	3 cut(s)	1052, 1760, 2323
Psp6I	CCWGG	4 cut(s)	1027, 1313, 1711, 2050
PspFI	CCCAGC	3 cut(s)	576, 1379, 2529
PspGI	CCWGG	4 cut(s)	1027, 1313, 1711, 2050
PspPI	GGNCC	8 cut(s)	44, 281, 1052, 1169, 1225, 1760, 2323, 2586
PspPPI	RGGWCCY	3 cut(s)	1052, 1760, 2323
PstI	CTGCAG	3 cut(s)	1043, 1530, 1930
PsuI	RGATCY	1 cut(s)	1421
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	5 cut(s)	371, 681, 1642, 1743, 2229
RsaNI	GTAC	5 cut(s)	370, 680, 1641, 1742, 2228
RseI	CAYNNNNRTG	3 cut(s)	324, 1802, 2066
SacI	GAGCTC	2 cut(s)	117, 675
SapI	GCTCTTC	1 cut(s)	1736
SaqAI	TTAA	8 cut(s)	339, 881, 1065, 1199, 1347, 2183, 2313, 2591
Sau3AI	GATC	4 cut(s)	442, 760, 1421, 2569
Sau96I	GGNCC	8 cut(s)	44, 281, 1052, 1169, 1225, 1760, 2323, 2586
SchI	GAGTC	5 cut(s)	872, 1193, 1712, 2114, 2229
ScrFI	CCNGG	4 cut(s)	1029, 1315, 1713, 2052
SduI	GDGCHC	7 cut(s)	117, 218, 675, 719, 739, 1731, 2089
SfaNI	GCATC	4 cut(s)	784, 1075, 1384, 1521
SfcI	CTRYAG	3 cut(s)	1039, 1526, 1926
SfoI	GGCGCC	1 cut(s)	184
SinI	GGWCC	5 cut(s)	281, 1052, 1225, 1760, 2323
SmiI	ATTTAAAT	1 cut(s)	1200
SmiMI	CAYNNNNRTG	3 cut(s)	324, 1802, 2066
SmlI	CTYRAG	3 cut(s)	1478, 2328, 2590
SmoI	CTYRAG	3 cut(s)	1478, 2328, 2590
SphI	GCATGC	2 cut(s)	1303, 1605
Sse9I	AATT	7 cut(s)	351, 869, 1018, 1089, 1557, 1873, 2216
SseBI	AGGCCT	1 cut(s)	1738
SspDI	GGCGCC	1 cut(s)	182
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	1911
SstI	GAGCTC	2 cut(s)	117, 675
StuI	AGGCCT	1 cut(s)	1738
StyD4I	CCNGG	4 cut(s)	1027, 1313, 1711, 2050
StyI	CCWWGG	6 cut(s)	210, 284, 363, 603, 1972, 2523
SwaI	ATTTAAAT	1 cut(s)	1200
TaaI	ACNGT	3 cut(s)	699, 947, 2150
TaiI	ACGT	5 cut(s)	198, 647, 1747, 1792, 2368
TaqI	TCGA	2 cut(s)	126, 2412
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	7 cut(s)	351, 869, 1018, 1089, 1557, 1873, 2216
TatI	WGTACW	1 cut(s)	2227
TauI	GCSGC	2 cut(s)	111, 1817
TfiI	GAWTC	5 cut(s)	64, 806, 829, 1901, 2414
Tru1I	TTAA	8 cut(s)	339, 881, 1065, 1199, 1347, 2183, 2313, 2591
Tru9I	TTAA	8 cut(s)	339, 881, 1065, 1199, 1347, 2183, 2313, 2591
TscAI	CASTG	7 cut(s)	475, 691, 1651, 1705, 1930, 2073, 2245
TseFI	GTSAC	2 cut(s)	310, 2186
Tsp45I	GTSAC	2 cut(s)	310, 2186
TspDTI	ATGAA	9 cut(s)	68, 266, 466, 1047, 1089, 1194, 1265, 2186, 2574
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	7 cut(s)	475, 691, 1651, 1705, 1930, 2073, 2245
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	2 cut(s)	211, 2529
Vha464I	CTTAAG	1 cut(s)	2590
VneI	GTGCAC	2 cut(s)	715, 2085
VpaK11BI	GGWCC	5 cut(s)	281, 1052, 1225, 1760, 2323
VspI	ATTAAT	1 cut(s)	339
XagI	CCTNNNNNAGG	2 cut(s)	262, 728
XapI	RAATTY	1 cut(s)	1018
XceI	RCATGY	7 cut(s)	323, 1303, 1444, 1575, 1605, 1660, 1754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1815
XmiI	GTMKAC	1 cut(s)	1692
XspI	CTAG	1 cut(s)	1911
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	1399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.