Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

31517682 .. 31518892

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0179700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAATTATACCCATCATTTGTTGCAACATGTGGTTGTGTGGTAAGGCTTTTTGCAAGTGGGGAATGGAAAGGGTTGGAAAGTGAGATGAAGGAATACAAAGAAGGAAGAATCTCTTATATAATGAACCTGCTCTGGACTGCTGTGTCATGGCAAATTTGCTCGGTGGGTTTGTTGGGGTTGATTTTTGAAGTGTCTTCTCTCTTCTCCAATGTCATCAGTACCTTGGGGATGAGGCGATATCAGCTCCTCGGAAGTAGACGATTTAGGGAGCGAGTCCCACCCTCAAACCCAAAGCATACCGAGTCGTTTTATGGCTTTAAGGACTTGTGGGTTCTGGTTATGGTTCTGTTTTTTGTTTTGATAAGATACGGATGGGTTCTACGAAGAGATACCTTTACTGATTACGTCTTGGTTGGCGGACGAAGGGCGACTACTCATCCTTCTGGTCTGCATCGAACGAGGTGGGTGCAGGTGGCGGTGATTGACAACGGCGGGTGTCCAGGCGGGTCCGGCAGGGGCCTTGGTCAGAGGGGTGGTCCTAAGGTTCAATGGATAATATTAAGAGTTGGTCCTGAGTCTTTCAAGGCCCTGGGCGAGAATTATTCTTATGCCCCGTATTTGTATATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

211

Amino Acids

23.98

Weight (kDa)

9.66

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	1 - 83	4.7e-30	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
AasI	GACNNNNNNGTC	1 cut(s)	145
Acc36I	ACCTGC	2 cut(s)	138, 463
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	4 cut(s)	420, 479, 495, 507
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	191, 551, 586
AjnI	CCWGG	2 cut(s)	502, 591
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AoxI	GGCC	2 cut(s)	520, 588
ApoI	RAATTY	1 cut(s)	156
AspS9I	GGNCC	5 cut(s)	510, 520, 539, 572, 589
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	3 cut(s)	510, 539, 572
AxyI	CCTNAGG	1 cut(s)	543
BarI	GAAGNNNNNNTAC	2 cut(s)	418, 450
BbsI	GAAGAC	1 cut(s)	189
BccI	CCATC	2 cut(s)	22, 369
BceAI	ACGGC	1 cut(s)	508
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciT130I	CCWGG	2 cut(s)	504, 593
BfuAI	ACCTGC	2 cut(s)	138, 463
Bme1390I	CCNGG	2 cut(s)	504, 593
Bme18I	GGWCC	3 cut(s)	510, 539, 572
BmgT120I	GGNCC	5 cut(s)	510, 520, 539, 572, 589
BmiI	GGNNCC	2 cut(s)	511, 521
BmrFI	CCNGG	2 cut(s)	504, 593
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	225, 250, 523, 591, 592
Bse21I	CCTNAGG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	504, 593
BseDI	CCNNGG	5 cut(s)	225, 250, 523, 591, 592
BseGI	GGATG	3 cut(s)	237, 380, 439
BseMII	CTCAG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	522, 590
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	522, 590
BspACI	CCGC	4 cut(s)	420, 479, 495, 507
BspANI	GGCC	2 cut(s)	522, 590
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	511, 521
BspMI	ACCTGC	2 cut(s)	138, 463
BssECI	CCNNGG	5 cut(s)	225, 250, 523, 591, 592
BssT1I	CCWWGG	2 cut(s)	225, 523
Bst2UI	CCWGG	2 cut(s)	504, 593
Bst6I	CTCTTC	2 cut(s)	209, 382
BstDEI	CTNAG	2 cut(s)	543, 576
BstF5I	GGATG	3 cut(s)	237, 380, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 513
BstNI	CCWGG	2 cut(s)	504, 593
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	502, 591
BstV2I	GAAGAC	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	522, 590
BtsCI	GGATG	3 cut(s)	237, 380, 439
BveI	ACCTGC	2 cut(s)	138, 463
Cfr13I	GGNCC	5 cut(s)	510, 520, 539, 572, 589
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	30, 150
CviJI	RGCY	5 cut(s)	49, 247, 318, 522, 590
CviKI_1	RGCY	5 cut(s)	49, 247, 318, 522, 590
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	543, 576
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	209, 382
EarI	CTCTTC	2 cut(s)	209, 382
EciI	GGCGGA	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	225, 523
Eco32I	GATATC	1 cut(s)	242
Eco47I	GGWCC	3 cut(s)	510, 539, 572
Eco81I	CCTNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	2 cut(s)	520, 589
EcoRII	CCWGG	2 cut(s)	502, 591
EcoRV	GATATC	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	225, 523
ErhI	CCWWGG	2 cut(s)	225, 523
FaeI	CATG	2 cut(s)	33, 153
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	29, 149
FauI	CCCGC	2 cut(s)	488, 500
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	3 cut(s)	244, 387, 426
HaeIII	GGCC	2 cut(s)	522, 590
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	2 cut(s)	33, 153
HinfI	GANTC	4 cut(s)	111, 276, 305, 578
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	254, 531
Hpy188III	TCNNGA	2 cut(s)	136, 575
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	4 cut(s)	85, 98, 420, 453
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	4, 26, 56, 454, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 513
HpyF3I	CTNAG	2 cut(s)	543, 576
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	33, 153
LmnI	GCTCC	2 cut(s)	252, 271
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	408
MboII	GAAGA	4 cut(s)	120, 189, 196, 399
MluCI	AATT	3 cut(s)	5, 156, 601
MlyI	GAGTC	3 cut(s)	285, 314, 587
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	228, 260, 295, 456, 525
MseI	TTAA	3 cut(s)	321, 563, 634
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	504, 593
MvaI	CCWGG	2 cut(s)	504, 593
MwoI	GCNNNNNNNGC	2 cut(s)	244, 513
NlaIII	CATG	2 cut(s)	33, 153
NlaIV	GGNNCC	2 cut(s)	511, 521
NspI	RCATGY	1 cut(s)	33
PaqCI	CACCTGC	1 cut(s)	463
PasI	CCCWGGG	1 cut(s)	592
PciI	ACATGT	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	111
PleI	GAGTC	3 cut(s)	284, 313, 586
PpsI	GAGTC	3 cut(s)	284, 313, 586
PscI	ACATGT	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	502, 591
PspGI	CCWGG	2 cut(s)	502, 591
PspN4I	GGNNCC	2 cut(s)	511, 521
PspPI	GGNCC	5 cut(s)	510, 520, 539, 572, 589
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	321, 563, 634
Sau96I	GGNCC	5 cut(s)	510, 520, 539, 572, 589
SchI	GAGTC	3 cut(s)	285, 314, 587
ScrFI	CCNGG	2 cut(s)	504, 593
SetI	ASST	8 cut(s)	132, 227, 249, 398, 411, 467, 477, 549
SfaNI	GCATC	1 cut(s)	463
SinI	GGWCC	3 cut(s)	510, 539, 572
Sse9I	AATT	3 cut(s)	5, 156, 601
SsiI	CCGC	4 cut(s)	420, 479, 495, 507
SspI	AATATT	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	502, 591
StyI	CCWWGG	2 cut(s)	225, 523
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	457
TasI	AATT	3 cut(s)	5, 156, 601
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	3 cut(s)	321, 563, 634
Tru9I	TTAA	3 cut(s)	321, 563, 634
TspDTI	ATGAA	2 cut(s)	104, 140
TspGWI	ACGGA	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	510, 539, 572
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.