Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005450

Physical Location & Seq

Genomic Coordinates Forward (+)

50387032 .. 50392205

Gene Structure 5174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG254100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGGAAGCTAACTACGCTAACAACCACCACCACAACCAAGCGACGCGGTGCTTCGGGCCGCAGATGAAAATGACGATTCAGCCCTCGCAGCAGCAGCAGCAGCACTCCGACAACGACCGCAGCAGCGGCGAGCTCCGCGCCCTCGACTGCAACCTCACCTCCCTCTGCGACCACATCCAGACCGAAGGCTTCAACTCCGGCGCCTTCTCCGACGTCCTCGTCCTCGCCATGGGCTCCACCTATCACCTCCACCGCCTCATCCTCTCCCGCAGCCCCTACTTCAGGAATATGCTTCATGGACCTTGGAAAGAAGCCAATGCTCCCATTGTGACATTACATGTAGATGATAAGAATATTAATGCAGAGGCAATTGCAACGGCCTTGGCGTACTTGTATGGCCACCACCCCAAGCTTAGTGATACCAATGCCTTTCACGTTCTTGCTGCTGCTTCTTTTCTTGATCTTCAGGATTTATGTGCTATATGCACTGACTTCATTATATCGGAACTATGGACTTCAAACTTCTTAGCCTATCAGGTGTTTGCGGAGGGGCAAGATTATGGCATACATGGAGAACGGGTAAGAAATGCTTGCTGGGGCTACCTTTGTCAAAGCGGTGCCATGGAGTTGAAAGAGGTGCTTCCGAGACTTTCTTCTCAAACATTGCTTGCATTACTCACCTCTGACGAGCTCTGGGTACCCAGTGAAGAGAAACGGTTTGAGCTGGCATTGTGCACATTCCTTTCAAAGGGTGCTCAATGCAAACAGGAAGATTATGATCATGGAAGTTCCAGTTCGGAGACAGGGACGGATGCACATTCTGATTCCTCTAAATTAAATGGAAAGAATCTGACTGATAGCTTCACTAATAAAAGGTTGGAGTCTGAATTGGGGCGCTTAACTCTAAAAGATGATTTAGAGGGACATAATACAGCTCGTAACCTTCTGATAGAGCTTGCAGACTGTGTAGTTGACTTCCAAACAGGAGGTTCAAATGCCAAACAGCAAGTGCAGCAAGTTGCTTACCCTCAGTCAAATTTTGAGCCAGGATACAACTGCAGCATGGGAGGTCCTTCATCATTTAATACATTTTCAGACATAGATGCAATTAGAACTTCATGTTATGCGGAAATGCCTATTGGTGTTGGAGTAAGTAGATTGGGGGAAAATGGAGGGGCTATGGAGGGGCCATCTGATGAAGGGTCATGCTACCATTTAAATAACAATAGTTGGCTTGGTAGGGACCAGTCAAGGCAATGCTCGTCAATGAACTCTTCAAGTAGTGAGCTAATGCCAAATGATTGGGGAAGATGTGGCATGCCTCCTCTTTCCTGGGGTGGCAGGGTTGTAGGCAGAAGACAGCTTAAAGGTTATGGTAAAGGAGAACTTGGGGTTGGTGGGGAGGAATATGATGCATTTGTAAATATATTTGAAGGAGGATCTCTTCTATACTGCAACATGTCTTTTGAAGCACTTTTGAATGTAAGAAAGCAACTTGAGGAAATGGGGTTTCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTTTGAGCCAGAGAGTTCAAGAAATTGGCGCTGATACATGCAAAAGTTGCTGTCTAACAAGCATAGCATGCAGTTGCAGACAGCAATTTTCGTTCTCACATGGAGGTACCAACGGATACTACATGCAAGAGCATAATCAGAGTAACTCTTCTGGAGTGTACATCACTGAGTCTGCTCCAGGTGAAGGAAATGGCCTCTTCAGGCCTGTACGTGTGCATGTCAGGGGTCCTATTGATGGTCTTGCTGGTATTGGACGTGGAACCACATTTGTCCCAGCAGCCGCTTGGCCTCCAACTCGGTTCGTCTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTGCCAGCAGTCTCTTGCTAATGATGATTCAGAGGCTAGAGCTGACCACACTGCAGAGCTGTCAGGAGATGGATTGACAGCTTTGGTTGGGCTAAGCCAAGGAGGTAACAATGCAGCTAATGCTCATGTAGAGCAAACAGAGAGGGGCTATGAGATGGATATGCAAAGCCGAATGCCTGGAACTTCCATGTCAGTGCCAAGTTCTAGTGGTGCACCCGTGCAGATGGTAGAGTCATCAGACCAAGCACTTGGGATTGAGTGGGATAATGCAAACAGTTCCTCCATATCATTGGATATGAAAACACCTTTAAGTCACTTCCCTCCATTCCGCTTTGGGGTGCAATTTGAGGATGTACACAGACTCAGTGATGGCCAAGTCAAGCACTCTTCAGAAGTCTTTTATGCTGGTTCTTTATGGAAGGTTAGTGTTCAGGCTTTTAATGATGAGGACCCTCAAGGACGCCGAACACTTGGATTATTTCTCCACCGACGTAAAGCTGAGATTACCGACCCGTATAGAAAGGTGCAGATGTATGTCGATTCTCGTGAAAAGGTTACTGCCCGCTACCAGCTAATATGTCCATCAAAGAGGGAAGTCATGGTGTTTGGAAGCTACAAGCAAACAGGCACCCTTTTACCAAAAGCTCCGAAGGGCTGGGGCTGGCGAACAGCTCTGTTATTTGATGAACTTGCAGATCTTCTTCAAAATGGGGCCTTAAGAGTGGCTGCAGTGGTGCAGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

879

Amino Acids

96.67

Weight (kDa)

5.56

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	64 - 168	4.9e-15	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15840 AT4G15840
fragaria_vesca	FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240 FvH4_4g18240
malus_domestica	MD08G1066800.v1.1 MD13G1167900.v1.1
prunus_persica	Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1 Prupe.1G135400_v2.0.a1
pyrus_communis	pycom13g14360
rosa_chinensis	RchiOBHm_Chr4g0422381
rosa_laevigata	RLG00000007614
rosa_multiflora	Rmu_sc0013245.1_g000001 Rmu_sc0034689.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364500
rosa_rugosa	Rorug04G0179600 Rorug04G0179700
rosa_samantha	Rh4AG239100 Rh4AG239500 Rh4BG242700 Rh4CG254100 Rh4DG238200
rosa_wichuraiana	Rw4G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	1 cut(s)	216
Acc65I	GGTACC	2 cut(s)	697, 1658
AccB1I	GGYRCC	5 cut(s)	200, 617, 697, 1658, 2519
AccII	CGCG	2 cut(s)	46, 138
AclWI	GGATC	1 cut(s)	1447
AcoI	YGGCCR	2 cut(s)	397, 2263
AcsI	RAATTY	1 cut(s)	1036
AcuI	CTGAAG	4 cut(s)	265, 449, 1735, 2265
AcyI	GRCGYC	3 cut(s)	201, 213, 2353
AfaI	GTAC	6 cut(s)	389, 699, 1660, 1712, 1761, 2247
AfiI	CCNNNNNNNGG	6 cut(s)	229, 282, 748, 1736, 1787, 2227
AflII	CTTAAG	1 cut(s)	2608
AflIII	ACRYGT	3 cut(s)	337, 1458, 1762
AjiI	CACGTC	1 cut(s)	1808
AjnI	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
AjuI	GAANNNNNNNTTGG	4 cut(s)	1122, 1154, 1377, 1409
Alw21I	GWGCWC	5 cut(s)	135, 693, 737, 757, 2107
Alw26I	GTCTC	3 cut(s)	640, 794, 1908
Alw44I	GTGCAC	2 cut(s)	733, 2103
AlwI	GGATC	1 cut(s)	1447
AoxI	GGCC	9 cut(s)	56, 378, 397, 1187, 1744, 1754, 1838, 2263, 2604
ApaLI	GTGCAC	2 cut(s)	733, 2103
ApoI	RAATTY	1 cut(s)	1036
AseI	ATTAAT	1 cut(s)	357
Asp718I	GGTACC	2 cut(s)	697, 1658
AspLEI	GCGC	4 cut(s)	140, 203, 897, 1583
AspS9I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2341, 2604
AsuHPI	GGTGA	4 cut(s)	148, 236, 670, 1745
AvaII	GGWCC	5 cut(s)	299, 1070, 1243, 1778, 2341
BaeGI	GKGCMC	2 cut(s)	737, 2107
BalI	TGGCCA	2 cut(s)	399, 2265
BanI	GGYRCC	5 cut(s)	200, 617, 697, 1658, 2519
BanII	GRGCYC	3 cut(s)	135, 236, 693
BauI	CACGAG	2 cut(s)	1863, 2436
BbsI	GAAGAC	1 cut(s)	1363
Bbv12I	GWGCWC	5 cut(s)	135, 693, 737, 757, 2107
BccI	CCATC	8 cut(s)	1198, 1526, 1781, 1955, 2041, 2110, 2255, 2482
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
BciVI	GTATCC	2 cut(s)	1043, 1661
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	3 cut(s)	640, 794, 1908
BfaI	CTAG	2 cut(s)	1929, 2097
BfmI	CTRYAG	4 cut(s)	1057, 1544, 1944, 2619
BfoI	RGCGCY	3 cut(s)	204, 898, 1584
BfrI	CTTAAG	1 cut(s)	2608
BfuI	GTATCC	2 cut(s)	1043, 1661
BglII	AGATCT	1 cut(s)	2587
BlpI	GCTNAGC	1 cut(s)	1985
Bme1390I	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
Bme18I	GGWCC	5 cut(s)	299, 1070, 1243, 1778, 2341
BmgBI	CACGTC	1 cut(s)	1808
BmgT120I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2341, 2604
BmrFI	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	4 cut(s)	802, 1093, 1402, 1539
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	1363
BpmI	CTGGAG	2 cut(s)	1713, 1725
Bpu1102I	GCTNAGC	1 cut(s)	1985
BpuEI	CTTGAG	2 cut(s)	1517, 2331
BsaAI	YACGTR	1 cut(s)	1763
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	3 cut(s)	201, 213, 2353
BsaJI	CCNNGG	6 cut(s)	228, 302, 381, 621, 1332, 1990
BsaXI	ACNNNNNCTCC	6 cut(s)	143, 173, 564, 594, 2156, 2186
Bsc4I	CCNNNNNNNGG	6 cut(s)	229, 282, 748, 1736, 1787, 2227
Bse1I	ACTGG	3 cut(s)	702, 792, 1246
Bse3DI	GCAATG	2 cut(s)	662, 1262
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
BseDI	CCNNGG	6 cut(s)	228, 302, 381, 621, 1332, 1990
BseGI	GGATG	4 cut(s)	174, 258, 817, 2248
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	6 cut(s)	229, 282, 748, 1736, 1787, 2227
BseMI	GCAATG	2 cut(s)	662, 1262
BseMII	CTCAG	4 cut(s)	1043, 1710, 2269, 2382
BseNI	ACTGG	3 cut(s)	702, 792, 1246
BseRI	GAGGAG	1 cut(s)	1314
BseSI	GKGCMC	2 cut(s)	737, 2107
BseYI	CCCAGC	3 cut(s)	594, 1825, 2547
BsgI	GTGCAG	3 cut(s)	1031, 2132, 2438
Bsh1236I	CGCG	2 cut(s)	46, 138
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	9 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840, 2265, 2606
BshNI	GGYRCC	5 cut(s)	200, 617, 697, 1658, 2519
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	5 cut(s)	135, 693, 737, 757, 2107
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	4 cut(s)	820, 936, 1256, 1808
BslI	CCNNNNNNNGG	6 cut(s)	229, 282, 748, 1736, 1787, 2227
BsmAI	GTCTC	3 cut(s)	640, 794, 1908
BsmFI	GGGAC	4 cut(s)	820, 936, 1256, 1808
BsmI	GAATGC	1 cut(s)	2070
BsnI	GGCC	9 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840, 2265, 2606
Bsp1286I	GDGCHC	6 cut(s)	135, 236, 693, 737, 757, 2107
Bsp1407I	TGTACA	2 cut(s)	1710, 2245
Bsp143I	GATC	4 cut(s)	460, 778, 1439, 2587
Bsp1720I	GCTNAGC	1 cut(s)	1985
Bsp19I	CCATGG	2 cut(s)	228, 621
BspANI	GGCC	9 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840, 2265, 2606
BspCNI	CTCAG	4 cut(s)	1042, 1711, 2268, 2383
BspFNI	CGCG	2 cut(s)	46, 138
BspMAI	CTGCAG	4 cut(s)	1061, 1548, 1948, 2623
BspPI	GGATC	1 cut(s)	1447
BspT107I	GGYRCC	5 cut(s)	200, 617, 697, 1658, 2519
BspTI	CTTAAG	1 cut(s)	2608
BsrDI	GCAATG	2 cut(s)	662, 1262
BsrGI	TGTACA	2 cut(s)	1710, 2245
BsrI	ACTGG	3 cut(s)	702, 792, 1246
BssECI	CCNNGG	6 cut(s)	228, 302, 381, 621, 1332, 1990
BssMI	GATC	4 cut(s)	460, 778, 1439, 2587
BssNI	GRCGYC	3 cut(s)	201, 213, 2353
BssSI	CACGAG	2 cut(s)	1863, 2436
BssT1I	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
Bst2BI	CACGAG	2 cut(s)	1863, 2436
Bst2UI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
Bst4CI	ACNGT	3 cut(s)	717, 965, 2168
Bst6I	CTCTTC	6 cut(s)	702, 1279, 1449, 1705, 1754, 2284
BstACI	GRCGYC	3 cut(s)	201, 213, 2353
BstAFI	CTTAAG	1 cut(s)	2608
BstAPI	GCANNNNNTGC	3 cut(s)	1599, 1620, 2012
BstAUI	TGTACA	2 cut(s)	1710, 2245
BstBAI	YACGTR	1 cut(s)	1763
BstDEI	CTNAG	7 cut(s)	413, 526, 1029, 1719, 1985, 2255, 2391
BstDSI	CCRYGG	2 cut(s)	228, 621
BstENI	CCTNNNNNAGG	2 cut(s)	280, 746
BstF5I	GGATG	4 cut(s)	174, 258, 817, 2248
BstFNI	CGCG	2 cut(s)	46, 138
BstH2I	RGCGCY	3 cut(s)	204, 898, 1584
BstHHI	GCGC	4 cut(s)	140, 203, 897, 1583
BstKTI	GATC	4 cut(s)	463, 781, 1442, 2590
BstMAI	GTCTC	3 cut(s)	640, 794, 1908
BstMBI	GATC	4 cut(s)	460, 778, 1439, 2587
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
BstNSI	RCATGY	7 cut(s)	341, 1321, 1462, 1593, 1623, 1678, 1772
BstSCI	CCNGG	4 cut(s)	1045, 1331, 1729, 2068
BstSFI	CTRYAG	4 cut(s)	1057, 1544, 1944, 2619
BstSLI	GKGCMC	2 cut(s)	737, 2107
BstUI	CGCG	2 cut(s)	46, 138
BstV2I	GAAGAC	1 cut(s)	1363
BstX2I	RGATCY	2 cut(s)	1439, 2587
BstXI	CCANNNNNNTGG	3 cut(s)	1302, 2141, 2182
BstYI	RGATCY	2 cut(s)	1439, 2587
BsuI	GTATCC	2 cut(s)	1043, 1661
BsuRI	GGCC	9 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840, 2265, 2606
BtgI	CCRYGG	2 cut(s)	228, 621
BtrI	CACGTC	1 cut(s)	1808
BtsCI	GGATG	4 cut(s)	174, 258, 817, 2248
BtsI	GCAGTG	2 cut(s)	1941, 2628
BtsIMutI	CAGTG	7 cut(s)	486, 709, 1716, 1941, 2091, 2263, 2628
CfoI	GCGC	4 cut(s)	140, 203, 897, 1583
Cfr13I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2341, 2604
CseI	GACGC	2 cut(s)	52, 2361
Csp6I	GTAC	6 cut(s)	388, 698, 1659, 1711, 1760, 2246
CviQI	GTAC	6 cut(s)	388, 698, 1659, 1711, 1760, 2246
DdeI	CTNAG	7 cut(s)	413, 526, 1029, 1719, 1985, 2255, 2391
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	4 cut(s)	462, 780, 1441, 2589
DpnII	GATC	4 cut(s)	460, 778, 1439, 2587
DraI	TTTAAA	1 cut(s)	1218
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	397, 2263
Eam1104I	CTCTTC	6 cut(s)	702, 1279, 1449, 1705, 1754, 2284
EarI	CTCTTC	6 cut(s)	702, 1279, 1449, 1705, 1754, 2284
Ecl136II	GAGCTC	2 cut(s)	133, 691
Eco130I	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
Eco147I	AGGCCT	1 cut(s)	1756
Eco24I	GRGCYC	3 cut(s)	135, 236, 693
Eco47I	GGWCC	5 cut(s)	299, 1070, 1243, 1778, 2341
Eco53kI	GAGCTC	2 cut(s)	133, 691
Eco57I	CTGAAG	4 cut(s)	265, 449, 1735, 2265
EcoICRI	GAGCTC	2 cut(s)	133, 691
EcoNI	CCTNNNNNAGG	2 cut(s)	280, 746
EcoO109I	RGGNCCY	4 cut(s)	1070, 1778, 2341, 2604
EcoRII	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
EcoT14I	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
EcoT22I	ATGCAT	1 cut(s)	1417
EcoT38I	GRGCYC	3 cut(s)	135, 236, 693
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
FalI	AAGNNNNNCTT	6 cut(s)	574, 606, 624, 656, 1371, 1403
FaqI	GGGAC	4 cut(s)	820, 936, 1256, 1808
FauI	CCCGC	2 cut(s)	275, 2462
FbaI	TGATCA	1 cut(s)	778
FokI	GGATG	4 cut(s)	161, 245, 824, 2255
FriOI	GRGCYC	3 cut(s)	135, 236, 693
FspBI	CTAG	2 cut(s)	1929, 2097
GlaI	GCGC	4 cut(s)	139, 202, 896, 1582
GsaI	CCCAGC	3 cut(s)	598, 1829, 2551
GsuI	CTGGAG	2 cut(s)	1713, 1725
HaeII	RGCGCY	3 cut(s)	204, 898, 1584
HaeIII	GGCC	9 cut(s)	58, 380, 399, 1189, 1746, 1756, 1840, 2265, 2606
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	2 cut(s)	52, 2361
HhaI	GCGC	4 cut(s)	140, 203, 897, 1583
Hin1I	GRCGYC	3 cut(s)	201, 213, 2353
Hin6I	GCGC	4 cut(s)	138, 201, 895, 1581
HinP1I	GCGC	4 cut(s)	138, 201, 895, 1581
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	9 cut(s)	76, 824, 847, 881, 1721, 1919, 2123, 2253, 2432
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	4 cut(s)	148, 236, 670, 1745
Hpy166II	GTNNAC	5 cut(s)	735, 973, 1711, 2105, 2248
Hpy188III	TCNNGA	8 cut(s)	178, 283, 458, 467, 1571, 1704, 1956, 2438
Hpy8I	GTNNAC	5 cut(s)	735, 973, 1711, 2105, 2248
Hpy99I	CGWCG	3 cut(s)	46, 215, 2385
HpyAV	CCTTC	9 cut(s)	179, 214, 953, 1083, 1193, 1427, 1730, 2305, 2536
HpyCH4III	ACNGT	3 cut(s)	717, 965, 2168
HpyCH4IV	ACGT	5 cut(s)	213, 435, 1762, 1807, 2383
HpyF3I	CTNAG	7 cut(s)	413, 526, 1029, 1719, 1985, 2255, 2391
HpySE526I	ACGT	5 cut(s)	213, 435, 1762, 1807, 2383
Hsp92I	GRCGYC	3 cut(s)	201, 213, 2353
HspAI	GCGC	4 cut(s)	138, 201, 895, 1581
KasI	GGCGCC	1 cut(s)	200
KpnI	GGTACC	2 cut(s)	701, 1662
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	4 cut(s)	460, 778, 1439, 2587
LmnI	GCTCC	5 cut(s)	138, 239, 325, 1732, 2542
LweI	GCATC	4 cut(s)	802, 1093, 1402, 1539
MaeI	CTAG	2 cut(s)	1929, 2097
MaeII	ACGT	5 cut(s)	213, 435, 1762, 1807, 2383
MaeIII	GTNAC	6 cut(s)	328, 938, 1694, 1997, 2204, 2446
MalI	GATC	4 cut(s)	462, 780, 1441, 2589
MboI	GATC	4 cut(s)	460, 778, 1439, 2587
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	2 cut(s)	1439, 2587
MhlI	GDGCHC	6 cut(s)	135, 236, 693, 737, 757, 2107
MlsI	TGGCCA	2 cut(s)	399, 2265
MluCI	AATT	9 cut(s)	369, 833, 887, 1036, 1107, 1575, 1637, 1891, 2234
MluNI	TGGCCA	2 cut(s)	399, 2265
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	4 cut(s)	890, 1730, 2132, 2247
MmeI	TCCRAC	5 cut(s)	132, 234, 858, 1126, 1868
Mox20I	TGGCCA	2 cut(s)	399, 2265
Mph1103I	ATGCAT	1 cut(s)	1417
MscI	TGGCCA	2 cut(s)	399, 2265
MseI	TTAA	9 cut(s)	357, 836, 899, 1083, 1217, 1365, 2201, 2331, 2609
MslI	CAYNNNNRTG	2 cut(s)	342, 2084
Msp20I	TGGCCA	2 cut(s)	399, 2265
MspA1I	CMGCKG	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	2608
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	2070
MvaI	CCWGG	4 cut(s)	1047, 1333, 1731, 2070
MvnI	CGCG	2 cut(s)	46, 138
NarI	GGCGCC	1 cut(s)	201
NcoI	CCATGG	2 cut(s)	228, 621
NdeII	GATC	4 cut(s)	460, 778, 1439, 2587
NmuCI	GTSAC	2 cut(s)	328, 2204
NsiI	ATGCAT	1 cut(s)	1417
NspI	RCATGY	7 cut(s)	341, 1321, 1462, 1593, 1623, 1678, 1772
PaeI	GCATGC	2 cut(s)	1321, 1623
PceI	AGGCCT	1 cut(s)	1756
PciI	ACATGT	2 cut(s)	337, 1458
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PctI	GAATGC	1 cut(s)	2070
PfeI	GAWTC	5 cut(s)	76, 824, 847, 1919, 2432
PleI	GAGTC	4 cut(s)	889, 1729, 2131, 2247
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	4 cut(s)	889, 1729, 2131, 2247
Ppu21I	YACGTR	1 cut(s)	1763
PpuMI	RGGWCCY	3 cut(s)	1070, 1778, 2341
PscI	ACATGT	2 cut(s)	337, 1458
PshBI	ATTAAT	1 cut(s)	357
Psp124BI	GAGCTC	2 cut(s)	135, 693
Psp5II	RGGWCCY	3 cut(s)	1070, 1778, 2341
Psp6I	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
PspFI	CCCAGC	3 cut(s)	594, 1825, 2547
PspGI	CCWGG	4 cut(s)	1045, 1331, 1729, 2068
PspPI	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2341, 2604
PspPPI	RGGWCCY	3 cut(s)	1070, 1778, 2341
PstI	CTGCAG	4 cut(s)	1061, 1548, 1948, 2623
PsuI	RGATCY	2 cut(s)	1439, 2587
RsaI	GTAC	6 cut(s)	389, 699, 1660, 1712, 1761, 2247
RsaNI	GTAC	6 cut(s)	388, 698, 1659, 1711, 1760, 2246
RseI	CAYNNNNRTG	2 cut(s)	342, 2084
SacI	GAGCTC	2 cut(s)	135, 693
SaqAI	TTAA	9 cut(s)	357, 836, 899, 1083, 1217, 1365, 2201, 2331, 2609
Sau3AI	GATC	4 cut(s)	460, 778, 1439, 2587
Sau96I	GGNCC	8 cut(s)	56, 299, 1070, 1187, 1243, 1778, 2341, 2604
SchI	GAGTC	4 cut(s)	890, 1730, 2132, 2247
ScrFI	CCNGG	4 cut(s)	1047, 1333, 1731, 2070
SduI	GDGCHC	6 cut(s)	135, 236, 693, 737, 757, 2107
SfaNI	GCATC	4 cut(s)	802, 1093, 1402, 1539
SfcI	CTRYAG	4 cut(s)	1057, 1544, 1944, 2619
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	5 cut(s)	299, 1070, 1243, 1778, 2341
SmiI	ATTTAAAT	1 cut(s)	1218
SmiMI	CAYNNNNRTG	2 cut(s)	342, 2084
SmlI	CTYRAG	3 cut(s)	1496, 2346, 2608
SmoI	CTYRAG	3 cut(s)	1496, 2346, 2608
SphI	GCATGC	2 cut(s)	1321, 1623
Sse9I	AATT	9 cut(s)	369, 833, 887, 1036, 1107, 1575, 1637, 1891, 2234
SseBI	AGGCCT	1 cut(s)	1756
SspDI	GGCGCC	1 cut(s)	200
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	1929, 2097
SstI	GAGCTC	2 cut(s)	135, 693
StuI	AGGCCT	1 cut(s)	1756
StyD4I	CCNGG	4 cut(s)	1045, 1331, 1729, 2068
StyI	CCWWGG	5 cut(s)	228, 302, 381, 621, 1990
SwaI	ATTTAAAT	1 cut(s)	1218
TaaI	ACNGT	3 cut(s)	717, 965, 2168
TaiI	ACGT	5 cut(s)	216, 438, 1765, 1810, 2386
TaqI	TCGA	2 cut(s)	144, 2430
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	9 cut(s)	369, 833, 887, 1036, 1107, 1575, 1637, 1891, 2234
TatI	WGTACW	2 cut(s)	1710, 2245
TauI	GCSGC	3 cut(s)	61, 129, 1835
TfiI	GAWTC	5 cut(s)	76, 824, 847, 1919, 2432
Tru1I	TTAA	9 cut(s)	357, 836, 899, 1083, 1217, 1365, 2201, 2331, 2609
Tru9I	TTAA	9 cut(s)	357, 836, 899, 1083, 1217, 1365, 2201, 2331, 2609
TscAI	CASTG	7 cut(s)	493, 709, 1723, 1948, 2091, 2263, 2628
TseFI	GTSAC	2 cut(s)	328, 2204
Tsp45I	GTSAC	2 cut(s)	328, 2204
TspDTI	ATGAA	9 cut(s)	80, 284, 484, 1065, 1107, 1212, 1283, 2204, 2592
TspGWI	ACGGA	2 cut(s)	824, 1680
TspRI	CASTG	7 cut(s)	493, 709, 1723, 1948, 2091, 2263, 2628
Vha464I	CTTAAG	1 cut(s)	2608
VneI	GTGCAC	2 cut(s)	733, 2103
VpaK11BI	GGWCC	5 cut(s)	299, 1070, 1243, 1778, 2341
VspI	ATTAAT	1 cut(s)	357
XagI	CCTNNNNNAGG	2 cut(s)	280, 746
XapI	RAATTY	1 cut(s)	1036
XceI	RCATGY	7 cut(s)	341, 1321, 1462, 1593, 1623, 1678, 1772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1833
XspI	CTAG	2 cut(s)	1929, 2097
ZraI	GACGTC	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.