Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006144

Physical Location & Seq

Genomic Coordinates Forward (+)

6652397 .. 6655778

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1079900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGCGGATGTGGTCCAGTACCGGATGGAGCGTATGCTCCCGGAGTTGGACGACCTGGAGAAGGAGGAACTGTTCACGAGACGTGAGCTTGCTGAGATTGTCAAGCAGCGTCGCAATTTTGAATTCCGGCTCAAGCGGCCGAGCCCACTCAAGGAGGACTACCTTGCCTACATTGACTACGAGACTAAGGTCGACAAGCTAAGGCGCTTGAGGAAAAAGGCAAAGTTGCCGGAGCGGGAAGATAACGAGGAGACAAAGAAGAAGAAGAGGAAGTCGGTTTCAGACTTTGCTGGCGTCAGGAGGATTCTTGATATTTATAGGCTTGCCGTCACGAGGTTCACTGGCGATCTTGAACTCTGGTTTCGCTACCTTGACTTTTGTAAAGAGCGACGAAATGGTAGGATCAAGGAGGTCTTGAATAAGGTAATTGGGTTTCATTCCAAGCAGCCATCTGTTTGGATTTATAAAGCAGCTTGGGAATTCGACAACTTCTCAAATGTCGAAGCTGCCCGTAATACAATGCTACAGGGGTTGAGATTTTGCAAAAATTCAGAAGATCTTTGGTTAGAGTATCTCCGGATGGAACTCACATTCCTTAATAAACTAAAGGCTCGAAAGGTTGCTCTTGGAGAGGATGAGGGCAGTCTGGTTCGTGATAAGATTAGTGCTGATGAGCAACAGTGGAAAAGTGAAAACAAAGATTTATACATGCCCCTCCATGAAGAAAGAGAAAATGATGAAAATAATGAAGGGTCAGATATTGAAGAAAGCAAATCAAGGAAGAAAGTTGATAAGTTACAAGAGGTAGGTTTTGGCGTGATAAAAACCATATACAGTGAAGCAGTTAAAGCTCTTCCCTCCAGCTTTACCCTGAGAAAGCGGTTTTTAGAGATCTTGAAATCTATCAACTTGGCTAAATCTGGGGAAATGCGTGAGGAAGTACTAAGTGACATGAAGAGAGACTTCTCAACAGAACCAGAGTATTGGGATTGGCTTGCTAAATTTGATTACAATCCTGCAAGTACACAGGAAGAGACGGGTGAAGAAATAACATTTTCTTGTATGGGAAAAGCTATTCAGGTCTATGAGGATGCCATACAAGTTTTGCCTTCGGCCAAAATGTTCAAGCACTATGCAAAGTTTCTCATGGGTGCTGTAGCTCTTCTAGTAGGAGACAACGTGACTTCTCTAGACAATCAATCTGCTAGTTATGTTTCACGTCTTTTGGGCCTTTACCAAAAGGCTGATACAATCGGGTGCATGGATGAGGAACTTGCCTATGAGCATATTTCATTATATTTGCAACTTGGAAGAGTGGATGAAGCTCGGAAACTGGCACACAATCTTTGTTGTGGAAAATTTCCAAATTCAGCAAAGGTGCGGGTATTATGGGCCTCTATAGAAATGAAGCACTCGACAAGGGATCTTATTTCTTCGAGCAAAGATAAGCTGCTATCGATCTTTGAACTTGTAAAAGATGGTTTGACAAGACTGTCAATTTCAGAAGCTGAGAGCTTGTGGGTAATGGCCCTTAAATTCTTTGCCAGTCAAAAACATTATTTTGACATGTTGGTTGAGGTTGCTGTTGCATCGTTAATTAAATATCGTGGCAGTGACGAAGGATTTTCCCTCTCTTCTATTATTGTGAATTTTGTTCTTCAAAAAGATGGAATTGCGCATGCTAGAGTGATGTATAAGCGCTTTACAGCTTTACCACGGCCTGGGCTAGTTCTATATAGGACCTGCATAGAATTGGAAACAAACCTTGCATCAAATGGTGATAAAACTGGTCTTGAAAATGCCCGGAAGTTGTATTTTTCTGCACTTCAGACTTATGACCAAGATTCGAGCTTGTGGCGAGATTACTGGCTTATGGAGACCAAGATGGGAACATCAAAGACAGCTTCTGAAGTATCTTGGCGTGCACGTAAGACTCTAAAGGACAGTAGTGCACTTTCTTTGGCACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

658

Amino Acids

76.3

Weight (kDa)

8.47

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3_assoc_6	PF08640	9 - 86	5.5e-24	U3 small nucleolar RNA-associated protein 6
UTP6_C	PF24892	358 - 646	1.5e-15	U3 small nucleolar RNA-associated protein 6 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28200
fragaria_vesca	FvH4_5g29980 FvH4_5g29980 FvH4_5g29980
malus_domestica	MD08G1079900.v1.1 MD15G1066800.v1.1
prunus_persica	Prupe.4G224400_v2.0.a1
pyrus_communis	pycom08g06600 pycom15g06340
rosa_chinensis	RchiOBHm_Chr7g0223851 RchiOBHm_Chr7g0223951
rosa_laevigata	RLG00000001926
rosa_multiflora	Rmu_sc0002469.1_g000009 Rmu_sc0004540.1_g000012 Rmu_sc0004540.1_g000016
rosa_roxburghii	Rroxscaffold_3G00235230
rosa_rugosa	Rorug07G0220900
rosa_samantha	Rh7AG363500 Rh7AG364100 Rh7BG354600 Rh7BG355500 Rh7CG382100 Rh7CG382900 Rh7DG358100 Rh7DG358600
rosa_wichuraiana	Rw7G030850 Rw7G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AasI	GACNNNNNNGTC	1 cut(s)	1492
Acc16I	TGCGCA	1 cut(s)	1677
Acc36I	ACCTGC	1 cut(s)	1751
AccB7I	CCANNNNNTGG	1 cut(s)	1721
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	576
AciI	CCGC	5 cut(s)	5, 136, 235, 880, 1381
AclWI	GGATC	2 cut(s)	410, 1431
AcoI	YGGCCR	2 cut(s)	137, 1113
AcsI	RAATTY	8 cut(s)	122, 479, 547, 1001, 1358, 1366, 1535, 1648
AcuI	CTGAAG	2 cut(s)	1811, 1929
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	3 cut(s)	20, 942, 1024
AfeI	AGCGCT	1 cut(s)	1700
AfiI	CCNNNNNNNGG	5 cut(s)	46, 61, 151, 333, 1721
AflIII	ACRYGT	1 cut(s)	1566
AgsI	TTSAA	9 cut(s)	122, 353, 418, 764, 898, 1126, 1466, 1661, 1796
AjiI	CACGTC	2 cut(s)	83, 1220
AjnI	CCWGG	2 cut(s)	54, 1720
AleI	CACNNNNGTG	1 cut(s)	1969
AloI	GAACNNNNNNTCC	4 cut(s)	56, 88, 576, 608
Alw21I	GWGCWC	2 cut(s)	1927, 1954
Alw26I	GTCTC	7 cut(s)	73, 176, 245, 954, 1028, 1167, 1871
Alw44I	GTGCAC	2 cut(s)	1923, 1950
AlwI	GGATC	2 cut(s)	410, 1431
AlwNI	CAGNNNCTG	2 cut(s)	1508, 1907
Aor13HI	TCCGGA	1 cut(s)	576
Aor51HI	AGCGCT	1 cut(s)	1700
AoxI	GGCC	6 cut(s)	137, 1113, 1228, 1392, 1527, 1718
ApaLI	GTGCAC	2 cut(s)	1923, 1950
ApeKI	GCWGC	5 cut(s)	106, 445, 470, 506, 1450
ApoI	RAATTY	8 cut(s)	122, 479, 547, 1001, 1358, 1366, 1535, 1648
AspLEI	GCGC	3 cut(s)	207, 1678, 1701
AspS9I	GGNCC	5 cut(s)	13, 1228, 1392, 1528, 1740
AsuC2I	CCSGG	2 cut(s)	41, 1804
AsuHPI	GGTGA	2 cut(s)	1052, 1790
AvaII	GGWCC	2 cut(s)	13, 1740
BaeGI	GKGCMC	2 cut(s)	1927, 1954
BanII	GRGCYC	1 cut(s)	146
BauI	CACGAG	2 cut(s)	76, 331
Bbv12I	GWGCWC	2 cut(s)	1927, 1954
BbvI	GCAGC	5 cut(s)	118, 457, 482, 493, 1437
BccI	CCATC	6 cut(s)	19, 457, 574, 1472, 1661, 1879
BceAI	ACGGC	2 cut(s)	311, 1733
BciT130I	CCWGG	2 cut(s)	56, 1722
BcnI	CCSGG	2 cut(s)	41, 1804
BcoDI	GTCTC	7 cut(s)	73, 176, 245, 954, 1028, 1167, 1871
BfaI	CTAG	5 cut(s)	1166, 1190, 1206, 1683, 1727
BfmI	CTRYAG	3 cut(s)	524, 1155, 1398
BfoI	RGCGCY	2 cut(s)	208, 1702
BfuAI	ACCTGC	1 cut(s)	1751
BglII	AGATCT	2 cut(s)	556, 891
BisI	GCNGC	6 cut(s)	107, 137, 446, 471, 507, 1451
BlsI	GCNGC	6 cut(s)	108, 138, 447, 472, 508, 1452
BmcAI	AGTACT	1 cut(s)	942
Bme1390I	CCNGG	4 cut(s)	41, 56, 1722, 1804
Bme18I	GGWCC	2 cut(s)	13, 1740
BmgBI	CACGTC	2 cut(s)	83, 1220
BmgT120I	GGNCC	5 cut(s)	13, 1228, 1392, 1528, 1740
BmrFI	CCNGG	4 cut(s)	41, 56, 1722, 1804
BmsI	GCATC	3 cut(s)	1081, 1598, 1778
BoxI	GACNNNNGTC	1 cut(s)	188
BpmI	CTGGAG	2 cut(s)	77, 844
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	116, 134, 229
BpuMI	CCSGG	2 cut(s)	41, 1804
Bsa29I	ATCGAT	1 cut(s)	1457
BsaAI	YACGTR	1 cut(s)	1928
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	1871
BsaJI	CCNNGG	2 cut(s)	1715, 1721
BsaWI	WCCGGW	2 cut(s)	21, 576
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 1164, 1194
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 61, 151, 333, 1721
Bse1I	ACTGG	6 cut(s)	16, 346, 1338, 1545, 1792, 1871
Bse8I	GATNNNNATC	1 cut(s)	1011
BseAI	TCCGGA	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	56, 1722
BseCI	ATCGAT	1 cut(s)	1457
BseDI	CCNNGG	2 cut(s)	1715, 1721
BseGI	GGATG	7 cut(s)	13, 30, 585, 640, 1096, 1270, 1324
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	5 cut(s)	46, 61, 151, 333, 1721
BseMII	CTCAG	3 cut(s)	84, 863, 1500
BseNI	ACTGG	6 cut(s)	16, 346, 1338, 1545, 1792, 1871
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	2 cut(s)	1927, 1954
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	5 cut(s)	118, 457, 482, 493, 1437
BsgI	GTGCAG	1 cut(s)	1806
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	6 cut(s)	139, 1115, 1230, 1394, 1529, 1720
BshVI	ATCGAT	1 cut(s)	1457
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	1927, 1954
BsiSI	CCGG	6 cut(s)	22, 41, 127, 230, 577, 1804
BslI	CCNNNNNNNGG	5 cut(s)	46, 61, 151, 333, 1721
BsmAI	GTCTC	7 cut(s)	73, 176, 245, 954, 1028, 1167, 1871
BsmBI	CGTCTC	2 cut(s)	73, 1028
BsnI	GGCC	6 cut(s)	139, 1115, 1230, 1394, 1529, 1720
Bso31I	GGTCTC	1 cut(s)	1871
Bsp1286I	GDGCHC	3 cut(s)	146, 1927, 1954
Bsp13I	TCCGGA	1 cut(s)	576
Bsp143I	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
BspACI	CCGC	5 cut(s)	5, 136, 235, 880, 1381
BspANI	GGCC	6 cut(s)	139, 1115, 1230, 1394, 1529, 1720
BspCNI	CTCAG	3 cut(s)	85, 864, 1501
BspDI	ATCGAT	1 cut(s)	1457
BspEI	TCCGGA	1 cut(s)	576
BspMI	ACCTGC	1 cut(s)	1751
BspPI	GGATC	2 cut(s)	410, 1431
BspQI	GCTCTTC	2 cut(s)	858, 1167
BspTNI	GGTCTC	1 cut(s)	1871
BsrBI	CCGCTC	1 cut(s)	235
BsrI	ACTGG	6 cut(s)	16, 346, 1338, 1545, 1792, 1871
BssECI	CCNNGG	2 cut(s)	1715, 1721
BssMI	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	2 cut(s)	76, 331
Bst2BI	CACGAG	2 cut(s)	76, 331
Bst2UI	CCWGG	2 cut(s)	56, 1722
Bst4CI	ACNGT	5 cut(s)	72, 681, 836, 1494, 1946
Bst6I	CTCTTC	7 cut(s)	260, 858, 950, 1026, 1167, 1306, 1639
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	1928
BstC8I	GCNNGC	6 cut(s)	90, 292, 324, 996, 1680, 1923
BstDEI	CTNAG	6 cut(s)	93, 186, 200, 872, 944, 1509
BstDSI	CCRYGG	1 cut(s)	1715
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	7 cut(s)	13, 30, 585, 640, 1096, 1270, 1324
BstH2I	RGCGCY	2 cut(s)	208, 1702
BstHHI	GCGC	3 cut(s)	207, 1678, 1701
BstKTI	GATC	6 cut(s)	349, 405, 559, 894, 1426, 1461
BstMAI	GTCTC	7 cut(s)	73, 176, 245, 954, 1028, 1167, 1871
BstMBI	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 848
BstNI	CCWGG	2 cut(s)	56, 1722
BstNSI	RCATGY	3 cut(s)	712, 1570, 1682
BstPAI	GACNNNNGTC	1 cut(s)	188
BstSCI	CCNGG	4 cut(s)	39, 54, 1720, 1802
BstSFI	CTRYAG	3 cut(s)	524, 1155, 1398
BstSLI	GKGCMC	2 cut(s)	1927, 1954
BstV1I	GCAGC	5 cut(s)	118, 457, 482, 493, 1437
BstX2I	RGATCY	3 cut(s)	556, 891, 1423
BstXI	CCANNNNNNTGG	2 cut(s)	456, 984
BstYI	RGATCY	3 cut(s)	556, 891, 1423
BstZI	CGGCCG	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	1457
BsuRI	GGCC	6 cut(s)	139, 1115, 1230, 1394, 1529, 1720
BsuTUI	ATCGAT	1 cut(s)	1457
BtgI	CCRYGG	1 cut(s)	1715
BtrI	CACGTC	2 cut(s)	83, 1220
BtsCI	GGATG	7 cut(s)	13, 30, 585, 640, 1096, 1270, 1324
BtsI	GCAGTG	1 cut(s)	1618
BtsIMutI	CAGTG	4 cut(s)	339, 686, 841, 1618
BveI	ACCTGC	1 cut(s)	1751
Cac8I	GCNNGC	6 cut(s)	90, 292, 324, 996, 1680, 1923
CaiI	CAGNNNCTG	2 cut(s)	1508, 1907
CfoI	GCGC	3 cut(s)	207, 1678, 1701
Cfr13I	GGNCC	5 cut(s)	13, 1228, 1392, 1528, 1740
ClaI	ATCGAT	1 cut(s)	1457
CseI	GACGC	2 cut(s)	98, 283
Csp6I	GTAC	3 cut(s)	19, 941, 1023
CviAII	CATG	7 cut(s)	709, 719, 952, 1147, 1261, 1567, 1679
CviQI	GTAC	3 cut(s)	19, 941, 1023
DdeI	CTNAG	6 cut(s)	93, 186, 200, 872, 944, 1509
DpnI	GATC	6 cut(s)	348, 404, 558, 893, 1425, 1460
DpnII	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
DrdI	GACNNNNNNGTC	1 cut(s)	1492
DseDI	GACNNNNNNGTC	1 cut(s)	1492
EaeI	YGGCCR	2 cut(s)	137, 1113
EagI	CGGCCG	1 cut(s)	137
Eam1104I	CTCTTC	7 cut(s)	260, 858, 950, 1026, 1167, 1306, 1639
EarI	CTCTTC	7 cut(s)	260, 858, 950, 1026, 1167, 1306, 1639
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	1871
Eco47I	GGWCC	2 cut(s)	13, 1740
Eco47III	AGCGCT	1 cut(s)	1700
Eco52I	CGGCCG	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	1811, 1929
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	1740
EcoRI	GAATTC	2 cut(s)	122, 479
EcoRII	CCWGG	2 cut(s)	54, 1720
EcoT38I	GRGCYC	1 cut(s)	146
Esp3I	CGTCTC	2 cut(s)	73, 1028
FaeI	CATG	7 cut(s)	712, 722, 955, 1150, 1264, 1570, 1682
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 947, 979
FatI	CATG	7 cut(s)	708, 718, 951, 1146, 1260, 1566, 1678
FauI	CCCGC	2 cut(s)	228, 1374
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	107, 137, 446, 471, 507, 1451
FokI	GGATG	7 cut(s)	20, 37, 592, 647, 1103, 1277, 1331
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	107, 137, 446, 471, 507, 1451
FspBI	CTAG	5 cut(s)	1166, 1190, 1206, 1683, 1727
FspI	TGCGCA	1 cut(s)	1677
GlaI	GCGC	3 cut(s)	206, 1677, 1700
GluI	GCNGC	6 cut(s)	107, 137, 446, 471, 507, 1451
GsuI	CTGGAG	2 cut(s)	77, 844
HaeII	RGCGCY	2 cut(s)	208, 1702
HaeIII	GGCC	6 cut(s)	139, 1115, 1230, 1394, 1529, 1720
HapII	CCGG	6 cut(s)	22, 41, 127, 230, 577, 1804
HgaI	GACGC	2 cut(s)	98, 283
HhaI	GCGC	3 cut(s)	207, 1678, 1701
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	7 cut(s)	712, 722, 955, 1150, 1264, 1570, 1682
Hin6I	GCGC	3 cut(s)	205, 1676, 1699
HinP1I	GCGC	3 cut(s)	205, 1676, 1699
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	304, 1844, 1933
HpaII	CCGG	6 cut(s)	22, 41, 127, 230, 577, 1804
HphI	GGTGA	2 cut(s)	1052, 1790
Hpy166II	GTNNAC	6 cut(s)	75, 193, 339, 1025, 1925, 1952
Hpy188I	TCNGA	7 cut(s)	283, 553, 757, 1329, 1504, 1830, 1909
Hpy8I	GTNNAC	6 cut(s)	75, 193, 339, 1025, 1925, 1952
Hpy99I	CGWCG	2 cut(s)	114, 393
HpyAV	CCTTC	4 cut(s)	55, 743, 1119, 1613
HpyCH4III	ACNGT	5 cut(s)	72, 681, 836, 1494, 1946
HpyCH4IV	ACGT	4 cut(s)	82, 1179, 1219, 1927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 848
HpyF3I	CTNAG	6 cut(s)	93, 186, 200, 872, 944, 1509
HpySE526I	ACGT	4 cut(s)	82, 1179, 1219, 1927
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	7 cut(s)	712, 722, 955, 1150, 1264, 1570, 1682
HspAI	GCGC	3 cut(s)	205, 1676, 1699
Kpn2I	TCCGGA	1 cut(s)	576
Kzo9I	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
LguI	GCTCTTC	2 cut(s)	858, 1167
LmnI	GCTCC	3 cut(s)	28, 42, 232
Lsp1109I	GCAGC	5 cut(s)	118, 457, 482, 493, 1437
LweI	GCATC	3 cut(s)	1081, 1598, 1778
MaeI	CTAG	5 cut(s)	1166, 1190, 1206, 1683, 1727
MaeII	ACGT	4 cut(s)	82, 1179, 1219, 1927
MaeIII	GTNAC	5 cut(s)	328, 795, 947, 1180, 1613
MalI	GATC	6 cut(s)	348, 404, 558, 893, 1425, 1460
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
MflI	RGATCY	3 cut(s)	556, 891, 1423
MhlI	GDGCHC	3 cut(s)	146, 1927, 1954
MlyI	GAGTC	1 cut(s)	1927
MmeI	TCCRAC	1 cut(s)	27
MroI	TCCGGA	1 cut(s)	576
MseI	TTAA	5 cut(s)	597, 846, 1533, 1595, 1599
MslI	CAYNNNNRTG	1 cut(s)	1969
MspI	CCGG	6 cut(s)	22, 41, 127, 230, 577, 1804
MspR9I	CCNGG	4 cut(s)	41, 56, 1722, 1804
MvaI	CCWGG	2 cut(s)	56, 1722
MwoI	GCNNNNNNNGC	2 cut(s)	136, 848
NciI	CCSGG	2 cut(s)	41, 1804
NdeII	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
NlaIII	CATG	7 cut(s)	712, 722, 955, 1150, 1264, 1570, 1682
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	4 cut(s)	328, 947, 1180, 1613
NsbI	TGCGCA	1 cut(s)	1677
NspI	RCATGY	3 cut(s)	712, 1570, 1682
OliI	CACNNNNGTG	1 cut(s)	1969
PacI	TTAATTAA	1 cut(s)	1599
PaeI	GCATGC	1 cut(s)	1682
PciI	ACATGT	1 cut(s)	1566
PciSI	GCTCTTC	2 cut(s)	858, 1167
PfeI	GAWTC	2 cut(s)	304, 1844
PflMI	CCANNNNNTGG	1 cut(s)	1721
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	6 cut(s)	108, 138, 447, 472, 508, 1452
PleI	GAGTC	1 cut(s)	1927
PpsI	GAGTC	1 cut(s)	1927
Ppu21I	YACGTR	1 cut(s)	1928
PpuMI	RGGWCCY	1 cut(s)	1740
PscI	ACATGT	1 cut(s)	1566
PshAI	GACNNNNGTC	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	1740
Psp6I	CCWGG	2 cut(s)	54, 1720
PspGI	CCWGG	2 cut(s)	54, 1720
PspPI	GGNCC	5 cut(s)	13, 1228, 1392, 1528, 1740
PspPPI	RGGWCCY	1 cut(s)	1740
PstNI	CAGNNNCTG	2 cut(s)	1508, 1907
PsuI	RGATCY	3 cut(s)	556, 891, 1423
RsaI	GTAC	3 cut(s)	20, 942, 1024
RsaNI	GTAC	3 cut(s)	19, 941, 1023
RseI	CAYNNNNRTG	1 cut(s)	1969
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	2 cut(s)	858, 1167
SaqAI	TTAA	5 cut(s)	597, 846, 1533, 1595, 1599
SatI	GCNGC	6 cut(s)	107, 137, 446, 471, 507, 1451
Sau3AI	GATC	6 cut(s)	346, 402, 556, 891, 1423, 1458
Sau96I	GGNCC	5 cut(s)	13, 1228, 1392, 1528, 1740
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	1 cut(s)	1927
ScrFI	CCNGG	4 cut(s)	41, 56, 1722, 1804
SduI	GDGCHC	3 cut(s)	146, 1927, 1954
SfaNI	GCATC	3 cut(s)	1081, 1598, 1778
SfcI	CTRYAG	3 cut(s)	524, 1155, 1398
SinI	GGWCC	2 cut(s)	13, 1740
SmiMI	CAYNNNNRTG	1 cut(s)	1969
SmlI	CTYRAG	3 cut(s)	131, 149, 208
SmoI	CTYRAG	3 cut(s)	131, 149, 208
SphI	GCATGC	1 cut(s)	1682
SsiI	CCGC	5 cut(s)	5, 136, 235, 880, 1381
SspMI	CTAG	5 cut(s)	1166, 1190, 1206, 1683, 1727
StyD4I	CCNGG	4 cut(s)	39, 54, 1720, 1802
TaaI	ACNGT	5 cut(s)	72, 681, 836, 1494, 1946
TaiI	ACGT	4 cut(s)	85, 1182, 1222, 1930
TaqI	TCGA	8 cut(s)	192, 483, 501, 613, 1415, 1436, 1457, 1847
TatI	WGTACW	2 cut(s)	940, 1022
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	304, 1844
Tru1I	TTAA	5 cut(s)	597, 846, 1533, 1595, 1599
Tru9I	TTAA	5 cut(s)	597, 846, 1533, 1595, 1599
TscAI	CASTG	4 cut(s)	346, 686, 841, 1618
TseFI	GTSAC	4 cut(s)	328, 947, 1180, 1613
TseI	GCWGC	5 cut(s)	106, 445, 470, 506, 1450
Tsp45I	GTSAC	4 cut(s)	328, 947, 1180, 1613
TspDTI	ATGAA	8 cut(s)	425, 735, 753, 762, 968, 1281, 1335, 1421
TspRI	CASTG	4 cut(s)	346, 686, 841, 1618
Van91I	CCANNNNNTGG	1 cut(s)	1721
VneI	GTGCAC	2 cut(s)	1923, 1950
VpaK11BI	GGWCC	2 cut(s)	13, 1740
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	8 cut(s)	122, 479, 547, 1001, 1358, 1366, 1535, 1648
XbaI	TCTAGA	1 cut(s)	1189
XceI	RCATGY	3 cut(s)	712, 1570, 1682
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	5 cut(s)	1166, 1190, 1206, 1683, 1727
ZrmI	AGTACT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.