Rh7DG358100

U3 small nucleolar RNA-associated protein 6 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
47730052 .. 47740323
10272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG358100.1

Sequence Viewer

Length: 1239 bp
ATGGCTGACGTAGTCCAGTACCGACTTGAGCGTATGACCAATGAGCTCAACGATCTCGAGCAACGCGGAATTTTCACGCGCAGAGAGATATCTGAGATTGTCAAGAAGCGTACCAAGTTTGAGTACCGGCTCAAGCGTCCGAGCCCACTCAAGGAGGACTACCTTGCCTACATTGACTACGAGACTCAGCTTGATTCACTCCGTCGACTAAGAAAAAAATCAGTGATGCGTGAGCTGCAAAAGCAGGGCCTCAAGACCACAAAGAAGATGAAGAAGTCAGTTTCAGACTTTGCTGGAATCATGAGGATTGTTGATATTTATAGGCTTGCAGTCATGAGGTTTAAGGGAGATATTGAGCTCTGGTTTCGGTACCTTGAGTTTTGTCGACAGCGAAGGAATGGTAGAATGAAGAAGGTCCTGGCTGATGCAATCAAATTTCACCCAAAGGTCCCGGGTGTCTGGATCTATGCTGCAGCTTGGGAATTTGACCATAATTTGAATGTTGAAGCTGCCCGTGCTATCATGCAAAATGGGTTAAGAGTTTGCGCAACTTCAGAAGACCTCTGGATAGAGTATCTTCGCATGGAACTCACATTCCTCAATAAATTAAAGGCTCGGAAGGTTGCTCTTGGAGAGGATGAGGGCACTTTTTCCCATGATCAGATAAGTTCTGATAAGAAACAGTGGAGAGATGAAAACAAAGACTTATTCATGTCCCTTAATGACGAAGGAGAAAATAATGAAAGGTCAGATGATGAAAATGAAAAGTCAATGAAGAAAATTAGTAAGTTTCAAGAGCAAGGTTTTAGCATACTAAGAACCATATATGCTGGAGCAGTAGAAGCTCTTCCCTCTAGTTTCAGTTTGAGAAAATGTTTTTTGGGGATCCTGGAAGCAACTGACTTGGTTAATTCGGAAGCAATACGTAAGGAAATACTAAGCGATATGAAGAGAGCCTTCTCAACAGAACCAGAGTATTGGGATTGGCTTGCAAGACTTGAATATAATCCTGCAAGTAGGGAAGATATTAGTGAAGATGTCAAATCTCAGATAGAAAAAGCAGTTCAGGTTTACGAGGAGGCTATAGAAGTTTTACCTACAGCCATAATGCTCAACCATTATGCGAAATTTTTGAATGGTGTTGTCACTCTTCTAAAACTTGAAAACAAGCCTTCTGGGTTAGCTAGTCCATCTGCCAGTTATATTACTCTTCTTTTGAGGGCTTATGAAAAGATGTAA

Protein Analysis

412

Amino Acids

48.25

Weight (kDa)

8.88

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U3_assoc_6 PF08640 9 - 82 2.2e-26 U3 small nucleolar RNA-associated protein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 547
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccI GTMKAC 2 cut(s) 205, 385
AccII CGCG 2 cut(s) 66, 79
AciI CCGC 1 cut(s) 66
AclWI GGATC 3 cut(s) 470, 880, 893
AcsI RAATTY 4 cut(s) 69, 434, 482, 1127
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 4 cut(s) 20, 112, 125, 371
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 6 cut(s) 499, 506, 794, 1001, 1135, 1163
AjnI CCWGG 2 cut(s) 417, 888
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
AluBI AGCT 8 cut(s) 46, 190, 235, 358, 476, 509, 845, 1184
AluI AGCT 8 cut(s) 46, 190, 235, 358, 476, 509, 845, 1184
Alw21I GWGCWC 2 cut(s) 48, 360
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 3 cut(s) 470, 880, 893
Ama87I CYCGRG 2 cut(s) 56, 451
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 235, 470, 473, 509
ApoI RAATTY 4 cut(s) 69, 434, 482, 1127
Asp700I GAANNNNTTC 1 cut(s) 846
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 2 cut(s) 81, 548
AspS9I GGNCC 3 cut(s) 247, 415, 448
AsuC2I CCSGG 2 cut(s) 452, 453
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 2 cut(s) 56, 451
AvaII GGWCC 2 cut(s) 415, 448
BaeGI GKGCMC 1 cut(s) 647
BamHI GGATCC 1 cut(s) 885
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 3 cut(s) 48, 146, 360
BarI GAAGNNNNNNTAC 2 cut(s) 831, 863
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 48, 360
BbvI GCAGC 4 cut(s) 222, 457, 485, 496
BccI CCATC 1 cut(s) 1198
BciT130I CCWGG 2 cut(s) 419, 890
BclI TGATCA 1 cut(s) 658
BcnI CCSGG 2 cut(s) 452, 453
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 855, 1185
BfmI CTRYAG 3 cut(s) 471, 1083, 1098
BisI GCNGC 4 cut(s) 236, 471, 474, 510
BlsI GCNGC 4 cut(s) 237, 472, 475, 511
Bme1390I CCNGG 4 cut(s) 419, 452, 453, 890
Bme18I GGWCC 2 cut(s) 415, 448
BmeT110I CYCGRG 2 cut(s) 56, 451
BmgT120I GGNCC 3 cut(s) 247, 415, 448
BmiI GGNNCC 3 cut(s) 371, 450, 887
BmrFI CCNGG 4 cut(s) 419, 452, 453, 890
BmsI GCATC 2 cut(s) 216, 415
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 852
BpuEI CTTGAG 5 cut(s) 47, 116, 134, 236, 395
BpuMI CCSGG 2 cut(s) 452, 453
BsaAI YACGTR 1 cut(s) 926
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 2 cut(s) 16, 1197
BseBI CCWGG 2 cut(s) 419, 890
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 84, 200, 1061
BseNI ACTGG 2 cut(s) 16, 1197
BseRI GAGGAG 1 cut(s) 1091
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 4 cut(s) 222, 457, 485, 496
Bsh1236I CGCG 2 cut(s) 66, 79
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 48, 360
BsiHKCI CYCGRG 2 cut(s) 56, 451
BsiSI CCGG 2 cut(s) 127, 452
BslFI GGGAC 2 cut(s) 434, 700
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 434, 700
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 2 cut(s) 56, 451
Bsp1286I GDGCHC 4 cut(s) 48, 146, 360, 647
Bsp143I GATC 4 cut(s) 52, 462, 658, 885
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 3 cut(s) 85, 199, 1060
BspFNI CGCG 2 cut(s) 66, 79
BspHI TCATGA 2 cut(s) 300, 333
BspLI GGNNCC 3 cut(s) 371, 450, 887
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 3 cut(s) 470, 880, 893
BspQI GCTCTTC 1 cut(s) 852
BspT107I GGYRCC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 2 cut(s) 16, 1197
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 4 cut(s) 52, 462, 658, 885
Bst2UI CCWGG 2 cut(s) 419, 890
Bst4CI ACNGT 1 cut(s) 684
Bst6I CTCTTC 4 cut(s) 852, 944, 1155, 1215
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 2 cut(s) 327, 990
BstDEI CTNAG 6 cut(s) 93, 186, 209, 815, 938, 1047
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 2 cut(s) 66, 79
BstHHI GCGC 2 cut(s) 81, 548
BstKTI GATC 4 cut(s) 55, 465, 661, 888
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 4 cut(s) 52, 462, 658, 885
BstMWI GCNNNNNNNGC 4 cut(s) 235, 241, 515, 842
BstNI CCWGG 2 cut(s) 419, 890
BstSCI CCNGG 4 cut(s) 417, 450, 451, 888
BstSFI CTRYAG 3 cut(s) 471, 1083, 1098
BstSLI GKGCMC 1 cut(s) 647
BstSNI TACGTA 1 cut(s) 926
BstUI CGCG 2 cut(s) 66, 79
BstV1I GCAGC 4 cut(s) 222, 457, 485, 496
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 2 cut(s) 462, 885
BstXI CCANNNNNNTGG 1 cut(s) 978
BstYI RGATCY 2 cut(s) 462, 885
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 228, 689
Cac8I GCNNGC 2 cut(s) 327, 990
CciI TCATGA 2 cut(s) 300, 333
CfoI GCGC 2 cut(s) 81, 548
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 247, 415, 448
Cfr9I CCCGGG 1 cut(s) 451
CseI GACGC 1 cut(s) 125
Csp6I GTAC 4 cut(s) 19, 111, 124, 370
CviAII CATG 6 cut(s) 301, 334, 523, 583, 656, 712
CviQI GTAC 4 cut(s) 19, 111, 124, 370
DdeI CTNAG 6 cut(s) 93, 186, 209, 815, 938, 1047
DpnI GATC 4 cut(s) 54, 464, 660, 887
DpnII GATC 4 cut(s) 52, 462, 658, 885
Eam1104I CTCTTC 4 cut(s) 852, 944, 1155, 1215
EarI CTCTTC 4 cut(s) 852, 944, 1155, 1215
Ecl136II GAGCTC 2 cut(s) 46, 358
Eco105I TACGTA 1 cut(s) 926
Eco24I GRGCYC 3 cut(s) 48, 146, 360
Eco32I GATATC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 415, 448
Eco53kI GAGCTC 2 cut(s) 46, 358
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 2 cut(s) 56, 451
EcoICRI GAGCTC 2 cut(s) 46, 358
EcoO109I RGGNCCY 3 cut(s) 247, 415, 448
EcoRII CCWGG 2 cut(s) 417, 888
EcoRV GATATC 1 cut(s) 90
EcoT38I GRGCYC 3 cut(s) 48, 146, 360
FaeI CATG 6 cut(s) 304, 337, 526, 586, 659, 715
FalI AAGNNNNNCTT 2 cut(s) 941, 973
FaqI GGGAC 2 cut(s) 434, 700
FatI CATG 6 cut(s) 300, 333, 522, 582, 655, 711
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 2 cut(s) 205, 385
Fnu4HI GCNGC 4 cut(s) 236, 471, 474, 510
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 3 cut(s) 48, 146, 360
Fsp4HI GCNGC 4 cut(s) 236, 471, 474, 510
FspBI CTAG 2 cut(s) 855, 1185
FspI TGCGCA 1 cut(s) 547
GlaI GCGC 2 cut(s) 80, 547
GluI GCNGC 4 cut(s) 236, 471, 474, 510
GsuI CTGGAG 1 cut(s) 852
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 127, 452
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 81, 548
Hin1II CATG 6 cut(s) 304, 337, 526, 586, 659, 715
Hin6I GCGC 2 cut(s) 79, 546
HinP1I GCGC 2 cut(s) 79, 546
HincII GTYRAC 2 cut(s) 206, 386
HindII GTYRAC 2 cut(s) 206, 386
HinfI GANTC 3 cut(s) 184, 194, 297
HpaII CCGG 2 cut(s) 127, 452
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 206, 386, 1072
Hpy188III TCNNGA 8 cut(s) 56, 103, 253, 301, 334, 460, 565, 794
Hpy8I GTNNAC 3 cut(s) 206, 386, 1072
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 6 cut(s) 387, 406, 613, 722, 967, 1182
HpyCH4III ACNGT 1 cut(s) 684
HpyCH4IV ACGT 2 cut(s) 9, 925
HpyCH4V TGCA 7 cut(s) 238, 329, 428, 473, 526, 992, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 241, 515, 842
HpyF3I CTNAG 6 cut(s) 93, 186, 209, 815, 938, 1047
HpySE526I ACGT 2 cut(s) 9, 925
Hsp92II CATG 6 cut(s) 304, 337, 526, 586, 659, 715
HspAI GCGC 2 cut(s) 79, 546
KpnI GGTACC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 52, 462, 658, 885
LguI GCTCTTC 1 cut(s) 852
LmnI GCTCC 1 cut(s) 833
Lsp1109I GCAGC 4 cut(s) 222, 457, 485, 496
LweI GCATC 2 cut(s) 216, 415
MaeI CTAG 2 cut(s) 855, 1185
MaeII ACGT 2 cut(s) 9, 925
MaeIII GTNAC 1 cut(s) 1144
MalI GATC 4 cut(s) 54, 464, 660, 887
MboI GATC 4 cut(s) 52, 462, 658, 885
MflI RGATCY 2 cut(s) 462, 885
MhlI GDGCHC 4 cut(s) 48, 146, 360, 647
MluCI AATT 8 cut(s) 69, 434, 482, 493, 605, 780, 910, 1127
MlyI GAGTC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 5 cut(s) 342, 536, 608, 720, 909
MspI CCGG 2 cut(s) 127, 452
MspR9I CCNGG 4 cut(s) 419, 452, 453, 890
MvaI CCWGG 2 cut(s) 419, 890
MvnI CGCG 2 cut(s) 66, 79
MwoI GCNNNNNNNGC 4 cut(s) 235, 241, 515, 842
NciI CCSGG 2 cut(s) 452, 453
NdeII GATC 4 cut(s) 52, 462, 658, 885
NlaIII CATG 6 cut(s) 304, 337, 526, 586, 659, 715
NlaIV GGNNCC 3 cut(s) 371, 450, 887
NmuCI GTSAC 1 cut(s) 1144
NsbI TGCGCA 1 cut(s) 547
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 2 cut(s) 300, 333
PciSI GCTCTTC 1 cut(s) 852
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 2 cut(s) 194, 297
PflFI GACNNNGTC 1 cut(s) 11
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 4 cut(s) 237, 472, 475, 511
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 926
PpuMI RGGWCCY 2 cut(s) 415, 448
Psp124BI GAGCTC 2 cut(s) 48, 360
Psp5II RGGWCCY 2 cut(s) 415, 448
Psp6I CCWGG 2 cut(s) 417, 888
PspGI CCWGG 2 cut(s) 417, 888
PspN4I GGNNCC 3 cut(s) 371, 450, 887
PspPI GGNCC 3 cut(s) 247, 415, 448
PspPPI RGGWCCY 2 cut(s) 415, 448
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 462, 885
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 4 cut(s) 20, 112, 125, 371
RsaNI GTAC 4 cut(s) 19, 111, 124, 370
SacI GAGCTC 2 cut(s) 48, 360
SalI GTCGAC 2 cut(s) 204, 384
SapI GCTCTTC 1 cut(s) 852
SaqAI TTAA 5 cut(s) 342, 536, 608, 720, 909
SatI GCNGC 4 cut(s) 236, 471, 474, 510
Sau3AI GATC 4 cut(s) 52, 462, 658, 885
Sau96I GGNCC 3 cut(s) 247, 415, 448
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 4 cut(s) 419, 452, 453, 890
SduI GDGCHC 4 cut(s) 48, 146, 360, 647
SfaNI GCATC 2 cut(s) 216, 415
SfcI CTRYAG 3 cut(s) 471, 1083, 1098
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 2 cut(s) 415, 448
SlaI CTCGAG 1 cut(s) 56
SmaI CCCGGG 1 cut(s) 453
SmlI CTYRAG 6 cut(s) 26, 56, 131, 149, 251, 374
SmoI CTYRAG 6 cut(s) 26, 56, 131, 149, 251, 374
SnaBI TACGTA 1 cut(s) 926
Sse9I AATT 8 cut(s) 69, 434, 482, 493, 605, 780, 910, 1127
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 855, 1185
SstI GAGCTC 2 cut(s) 48, 360
StyD4I CCNGG 4 cut(s) 417, 450, 451, 888
TaaI ACNGT 1 cut(s) 684
TaiI ACGT 2 cut(s) 12, 928
TaqI TCGA 3 cut(s) 57, 205, 385
TasI AATT 8 cut(s) 69, 434, 482, 493, 605, 780, 910, 1127
TfiI GAWTC 2 cut(s) 194, 297
Tru1I TTAA 5 cut(s) 342, 536, 608, 720, 909
Tru9I TTAA 5 cut(s) 342, 536, 608, 720, 909
TscAI CASTG 2 cut(s) 228, 689
TseFI GTSAC 1 cut(s) 1144
TseI GCWGC 4 cut(s) 235, 470, 473, 509
Tsp45I GTSAC 1 cut(s) 1144
TspDTI ATGAA 9 cut(s) 284, 422, 700, 708, 756, 771, 777, 788, 962
TspGWI ACGGA 1 cut(s) 191
TspMI CCCGGG 1 cut(s) 451
TspRI CASTG 2 cut(s) 228, 689
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 415, 448
XapI RAATTY 4 cut(s) 69, 434, 482, 1127
XhoI CTCGAG 1 cut(s) 56
XmaI CCCGGG 1 cut(s) 451
XmiI GTMKAC 2 cut(s) 205, 385
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 2 cut(s) 855, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.