Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004540.1

Orthogroup ID

OG0006144

Physical Location & Seq

Genomic Coordinates Forward (+)

90696 .. 93694

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004540.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgttggatcgtgagctgcaaaagcagggccttaagaccatgaagaagatgaagaagtcagtttcggactttgctggtatcatgaggattgttgatatttataggcttgcagtcatgaggtttaagggagatatcgagctctggtttcggtaccttgagttctgtcgacagcgaaggaatggtagaatgaagaaggtcctggctgatgcaatcaaatttcacccaaaggtccctggtatctggatctatgctgcagcttgggattttgaccataatttgaatgttgaagctgcccgtgctatcatgcaaaatgggttaagagtttgcgcaacttcagaagacctctggatagagtatcttcgcatggaactcacattcctcaataaattaaaggctcggaaggttgctcttggagaggatgagggcacttttgcccgtgatcagataagtttggataagcaacaacttgaatataatcctgcaaggagggaagatattggtgaagatgtgactctttctcagatagaaaaagcagttcaggtttatgaggaggctatagaaattttgcctacggccataatgctccaccagtatgggaaattttggaatggtgttgtcactcttctaaaactagaaaacaagccttctgggttagctagtccatctgctggttatattcctcctcttttgagggcttacgaaaaggttaaaacaatggggggtgttagacactttacaagggattccatttcaccgagtaaagctgacctactgtccatccttgaacttcttaaagatgttttgacaagagtgtccatttcagaagctgagaacctgtggttaatggcccttaaattctttgcaaatcaaaaacattactttgacaagatggagtgctacatgctagagagatgtataaacgcttcatccctttaccacaccctggacttgcactatagagcctgcattgaattggaatcaaaccttgcatccattagtgacaaagatagcctcatcaatgccaggaaattatatgaatctgcacttaaaacttatgaccaagatttgagcttttggcgagattactatttgatggagaccaagatgggaacatcagaaccagcttctgccgtacattggcacgcacacaagattctaaaagacacgactgcacttgttccaccagatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

397

Amino Acids

45.91

Weight (kDa)

8.37

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28200
fragaria_vesca	FvH4_5g29980 FvH4_5g29980 FvH4_5g29980
malus_domestica	MD08G1079900.v1.1 MD15G1066800.v1.1
prunus_persica	Prupe.4G224400_v2.0.a1
pyrus_communis	pycom08g06600 pycom15g06340
rosa_chinensis	RchiOBHm_Chr7g0223851 RchiOBHm_Chr7g0223951
rosa_laevigata	RLG00000001926
rosa_multiflora	Rmu_sc0002469.1_g000009 Rmu_sc0004540.1_g000012 Rmu_sc0004540.1_g000016
rosa_roxburghii	Rroxscaffold_3G00235230
rosa_rugosa	Rorug07G0220900
rosa_samantha	Rh7AG363500 Rh7AG364100 Rh7BG354600 Rh7BG355500 Rh7CG382100 Rh7CG382900 Rh7DG358100 Rh7DG358600
rosa_wichuraiana	Rw7G030850 Rw7G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	811
Acc16I	TGCGCA	1 cut(s)	328
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	2 cut(s)	668, 943
AccI	GTMKAC	1 cut(s)	166
AclWI	GGATC	2 cut(s)	15, 251
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	4 cut(s)	215, 561, 599, 854
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	152, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	668, 943, 1137
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	5 cut(s)	280, 287, 470, 785, 971
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	4 cut(s)	198, 232, 942, 1022
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	9 cut(s)	16, 139, 257, 290, 656, 764, 827, 1071, 1124
AluI	AGCT	9 cut(s)	16, 139, 257, 290, 656, 764, 827, 1071, 1124
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	1091
AlwI	GGATC	2 cut(s)	15, 251
AlwNI	CAGNNNCTG	2 cut(s)	827, 1127
AoxI	GGCC	3 cut(s)	28, 573, 846
ApeKI	GCWGC	4 cut(s)	16, 251, 254, 290
ApoI	RAATTY	4 cut(s)	215, 561, 599, 854
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	28, 196, 229, 847
AsuHPI	GGTGA	3 cut(s)	212, 512, 744
AvaII	GGWCC	2 cut(s)	196, 229
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	907, 939
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	3, 238, 266, 277
BccI	CCATC	5 cut(s)	670, 785, 883, 1087, 1099
BceAI	ACGGC	2 cut(s)	588, 1115
BciT130I	CCWGG	4 cut(s)	200, 234, 944, 1024
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	1091
BfaI	CTAG	3 cut(s)	632, 657, 905
BfmI	CTRYAG	3 cut(s)	252, 555, 955
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	4 cut(s)	17, 252, 255, 291
BlsI	GCNGC	4 cut(s)	18, 253, 256, 292
Bme1390I	CCNGG	4 cut(s)	200, 234, 944, 1024
Bme18I	GGWCC	2 cut(s)	196, 229
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgT120I	GGNCC	4 cut(s)	28, 196, 229, 847
BmiI	GGNNCC	2 cut(s)	152, 231
BmrFI	CCNGG	4 cut(s)	200, 234, 944, 1024
BmsI	GCATC	2 cut(s)	196, 998
BpiI	GAAGAC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	1091
BsaJI	CCNNGG	2 cut(s)	232, 942
Bsc4I	CCNNNNNNNGG	3 cut(s)	668, 943, 1137
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	4 cut(s)	200, 234, 944, 1024
BseDI	CCNNGG	2 cut(s)	232, 942
BseGI	GGATG	4 cut(s)	424, 777, 926, 989
BseLI	CCNNNNNNNGG	3 cut(s)	668, 943, 1137
BseMII	CTCAG	2 cut(s)	533, 819
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	2 cut(s)	563, 672
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	3, 238, 266, 277
BsgI	GTGCAG	2 cut(s)	1026, 1155
BshFI	GGCC	3 cut(s)	30, 575, 848
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	668, 943, 1137
BsmAI	GTCTC	1 cut(s)	1091
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	30, 575, 848
Bso31I	GGTCTC	1 cut(s)	1091
Bsp1286I	GDGCHC	2 cut(s)	141, 428
Bsp143I	GATC	3 cut(s)	7, 243, 439
BspANI	GGCC	3 cut(s)	30, 575, 848
BspCNI	CTCAG	2 cut(s)	532, 820
BspHI	TCATGA	2 cut(s)	81, 114
BspLI	GGNNCC	2 cut(s)	152, 231
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	2 cut(s)	15, 251
BspT107I	GGYRCC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	1091
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	2 cut(s)	232, 942
BssMI	GATC	3 cut(s)	7, 243, 439
Bst2UI	CCWGG	4 cut(s)	200, 234, 944, 1024
Bst4CI	ACNGT	1 cut(s)	774
Bst6I	CTCTTC	1 cut(s)	627
BstAFI	CTTAAG	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	108, 964, 1143
BstDEI	CTNAG	2 cut(s)	519, 828
BstF5I	GGATG	4 cut(s)	424, 777, 926, 989
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	3 cut(s)	10, 246, 442
BstMAI	GTCTC	1 cut(s)	1091
BstMBI	GATC	3 cut(s)	7, 243, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 296
BstNI	CCWGG	4 cut(s)	200, 234, 944, 1024
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	4 cut(s)	198, 232, 942, 1022
BstSFI	CTRYAG	3 cut(s)	252, 555, 955
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	4 cut(s)	3, 238, 266, 277
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	30, 575, 848
BtsCI	GGATG	4 cut(s)	424, 777, 926, 989
Cac8I	GCNNGC	3 cut(s)	108, 964, 1143
CaiI	CAGNNNCTG	2 cut(s)	827, 1127
CciI	TCATGA	2 cut(s)	81, 114
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	4 cut(s)	28, 196, 229, 847
Csp6I	GTAC	2 cut(s)	151, 1133
CspCI	CAANNNNNGTGG	1 cut(s)	1170
CviAII	CATG	6 cut(s)	40, 82, 115, 304, 364, 901
CviQI	GTAC	2 cut(s)	151, 1133
DdeI	CTNAG	2 cut(s)	519, 828
DpnI	GATC	3 cut(s)	9, 245, 441
DpnII	GATC	3 cut(s)	7, 243, 439
DrdI	GACNNNNNNGTC	1 cut(s)	811
DriI	GACNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	811
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	627
Eam1105I	GACNNNNNGTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	1091
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	196, 229
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	3 cut(s)	28, 196, 229
EcoRII	CCWGG	4 cut(s)	198, 232, 942, 1022
EcoRV	GATATC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	6 cut(s)	43, 85, 118, 307, 367, 904
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	39, 81, 114, 303, 363, 900
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	17, 252, 255, 291
FokI	GGATG	4 cut(s)	431, 764, 913, 976
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	17, 252, 255, 291
FspBI	CTAG	3 cut(s)	632, 657, 905
FspI	TGCGCA	1 cut(s)	328
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	17, 252, 255, 291
HaeIII	GGCC	3 cut(s)	30, 575, 848
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	6 cut(s)	43, 85, 118, 307, 367, 904
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	5 cut(s)	511, 743, 977, 1037, 1153
HphI	GGTGA	3 cut(s)	212, 512, 744
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	7 cut(s)	67, 337, 399, 444, 522, 823, 1117
Hpy188III	TCNNGA	5 cut(s)	11, 82, 115, 241, 346
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	168, 187, 394, 654
HpyCH4III	ACNGT	1 cut(s)	774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 296
HpyF3I	CTNAG	2 cut(s)	519, 828
Hsp92II	CATG	6 cut(s)	43, 85, 118, 307, 367, 904
HspAI	GCGC	1 cut(s)	327
KpnI	GGTACC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	7, 243, 439
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	4 cut(s)	3, 238, 266, 277
LweI	GCATC	2 cut(s)	196, 998
MaeI	CTAG	3 cut(s)	632, 657, 905
MaeIII	GTNAC	3 cut(s)	508, 616, 998
MalI	GATC	3 cut(s)	9, 245, 441
MboI	GATC	3 cut(s)	7, 243, 439
MboII	GAAGA	9 cut(s)	55, 58, 64, 202, 350, 350, 503, 515, 614
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	141, 428
MluCI	AATT	8 cut(s)	215, 274, 386, 561, 599, 854, 971, 1028
MlyI	GAGTC	1 cut(s)	505
MseI	TTAA	9 cut(s)	33, 123, 317, 389, 708, 792, 842, 852, 1047
MslI	CAYNNNNRTG	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	32
MspR9I	CCNGG	4 cut(s)	200, 234, 944, 1024
MvaI	CCWGG	4 cut(s)	200, 234, 944, 1024
MwoI	GCNNNNNNNGC	2 cut(s)	22, 296
NdeII	GATC	3 cut(s)	7, 243, 439
NlaIII	CATG	6 cut(s)	43, 85, 118, 307, 367, 904
NlaIV	GGNNCC	2 cut(s)	152, 231
NmuCI	GTSAC	3 cut(s)	508, 616, 998
NsbI	TGCGCA	1 cut(s)	328
NspI	RCATGY	1 cut(s)	904
PagI	TCATGA	2 cut(s)	81, 114
PfeI	GAWTC	4 cut(s)	743, 977, 1037, 1153
PflMI	CCANNNNNTGG	2 cut(s)	668, 943
PkrI	GCNGC	4 cut(s)	18, 253, 256, 292
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PpuMI	RGGWCCY	2 cut(s)	196, 229
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	2 cut(s)	196, 229
Psp6I	CCWGG	4 cut(s)	198, 232, 942, 1022
PspGI	CCWGG	4 cut(s)	198, 232, 942, 1022
PspN4I	GGNNCC	2 cut(s)	152, 231
PspPI	GGNCC	4 cut(s)	28, 196, 229, 847
PspPPI	RGGWCCY	2 cut(s)	196, 229
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	827, 1127
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	2 cut(s)	152, 1134
RsaNI	GTAC	2 cut(s)	151, 1133
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	165
SaqAI	TTAA	9 cut(s)	33, 123, 317, 389, 708, 792, 842, 852, 1047
SatI	GCNGC	4 cut(s)	17, 252, 255, 291
Sau3AI	GATC	3 cut(s)	7, 243, 439
Sau96I	GGNCC	4 cut(s)	28, 196, 229, 847
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	4 cut(s)	200, 234, 944, 1024
SduI	GDGCHC	2 cut(s)	141, 428
SfaNI	GCATC	2 cut(s)	196, 998
SfcI	CTRYAG	3 cut(s)	252, 555, 955
SinI	GGWCC	2 cut(s)	196, 229
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	32, 155
SmoI	CTYRAG	2 cut(s)	32, 155
Sse9I	AATT	8 cut(s)	215, 274, 386, 561, 599, 854, 971, 1028
SspMI	CTAG	3 cut(s)	632, 657, 905
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	4 cut(s)	198, 232, 942, 1022
TaaI	ACNGT	1 cut(s)	774
TaqI	TCGA	2 cut(s)	135, 166
TasI	AATT	8 cut(s)	215, 274, 386, 561, 599, 854, 971, 1028
TfiI	GAWTC	4 cut(s)	743, 977, 1037, 1153
Tru1I	TTAA	9 cut(s)	33, 123, 317, 389, 708, 792, 842, 852, 1047
Tru9I	TTAA	9 cut(s)	33, 123, 317, 389, 708, 792, 842, 852, 1047
TseFI	GTSAC	3 cut(s)	508, 616, 998
TseI	GCWGC	4 cut(s)	16, 251, 254, 290
Tsp45I	GTSAC	3 cut(s)	508, 616, 998
TspDTI	ATGAA	5 cut(s)	56, 65, 203, 915, 1050
Van91I	CCANNNNNTGG	2 cut(s)	668, 943
Vha464I	CTTAAG	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	196, 229
XapI	RAATTY	4 cut(s)	215, 561, 599, 854
XceI	RCATGY	1 cut(s)	904
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	3 cut(s)	632, 657, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.