Rw7G030880

U3 small nucleolar RNA-associated protein 6 homolog

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
43817640 .. 43820547
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030880.1

Sequence Viewer

Length: 1635 bp
ATGTTGGATCGTGAGCTGGAAAAGCAGGGCCTTAAGACCATGAAGATTGTTGATATTTATAGGCTTGCAGTCATGAGGTTTAAGGGAGATATCGAGCTCTGGTTTCGGTACCTTGAGTTCTGTCGACAGCGAAGGAATGGTAGAATGAAGAAGGTCCCTGGTATCTGGATCTATGCTGCAGCTTGGGATTTTGACCATAATTTGAATGTTGATGCTGCCCGTGCTATCATGCAAAATGGGTTAAGAGTTTGCGCAACTTCAGAAGACCTCTGGATAGATTTGGATAAGCAACAGTGGAGAGATGAGAACAAAGACTTACTCATGTCCCTTAATGACGAAGGAGAAAATAATGAAAGGTCAGATGATGAAAATGAAAACTCAATAAAGAAAATTAGTAAGTTTCAAGAGCAAGGTTTTAGCATACTAAGAGCCATATATGCTGGAGCAGTAGAAGCTCTTCCCTCTAGTTTTAGTGTGAGAAAACCTTTTTTGGAGATCCTGGAAGCAACTGACTTGGTTAATTCGTATGCAATATGTAAGGAAATACTAAAGTATTGGGATTGGCTTGCAAGACTTGAGTATAATCCTGCAAGTAGGGAAGATATTGGTGAAGATGTCACTCTTTCTCAGATAGAAAAAGCAGTTCAGGTTTATGAGGAGGCTATAGAAATTTTGCCTACGGCCATAATGCTCCACCAGTATGGGAAATTTTGGAATGGTGTTGTCACTCTTCTAAAACTAGAAAACAAGCCTTCTGGGTTAGCTAGTCCACCTGCTGGTTATATTCCTCCTCTTTTGAGGGCTTACGAAAAGGTTAAAACAATGGGGGGGTATATTGATGAGGTTCTTGCTTGTCAGCATATTTCATTTCTTCTGCAACTTGGAAGACTGGAGGAAGCCCAGAAACTGGCAGAAAATCTTTGTTGTGGAATATTTTCAAATTCAATGAAGTTATGGCTATTAAGATTCTCTGTAGGTGTTAGACACTTTACAAGGGATTCCATTTCACCGAGTAAAGCTGACCTACTGTCCATCTTTGAACTTCTTAAAGATGTTTTGACAAGAGTGTCCATTTCAGAAGCTGAGAACCTGTGGTTAATGGCCCTTAAATTCTTTGCAAATCAAAAACATTACTTTGACAAGTTAGTTGAGATTTCTGTTAGATCATTGACAAAAAATGGCGGCAATGAACAAGGATTTTCCCTCTCTGCTGCTATTGTGCATTTTGTTCTTCAAAAGGATGGAGTACTACATGCTAGAGAGATGTATAAACGCTTCATCCCGTTACCACACCCTGGACTTGCACTATATAGAGCCTGCATTGAATTGGAATCAAACCTTGCATCCATTAGTGACAAAGATAGCCTCATCAATGCCAGGAAATTATATGAATCTGCACTTAAAACTTATGACCAAGATTTGAGCTTTTGGCGAGATTACTATTTGATGGAGACCAAGGTAAGCTCTAGCAGTTTACAAACATCTACTATAAAGAGAACTGCAATTTCCATTTTCAATAACAATCCTATATTTTCAATAAATTTATGGGGAACATCAGAAACAGCTTCTGCCGTACATTGGCACGCACACAAGATTCTAAAAGACACGACTGCACTTGTTACACCAGATTTGTAA

Protein Analysis

544

Amino Acids

62.35

Weight (kDa)

6.19

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP6_C PF24892 212 - 494 4e-09 U3 small nucleolar RNA-associated protein 6 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 781
AasI GACNNNNNNGTC 1 cut(s) 1066
Acc16I TGCGCA 1 cut(s) 253
Acc36I ACCTGC 1 cut(s) 781
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 3 cut(s) 776, 907, 1295
AccI GTMKAC 1 cut(s) 124
AciI CCGC 1 cut(s) 1182
AclWI GGATC 3 cut(s) 15, 176, 490
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 5 cut(s) 669, 707, 940, 1109, 1540
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 110, 1248, 1575
AfiI CCNNNNNNNGG 4 cut(s) 776, 907, 1295, 1578
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 9 cut(s) 205, 404, 939, 945, 1040, 1235, 1325, 1516, 1536
AhdI GACNNNNNGTC 1 cut(s) 1027
AjnI CCWGG 4 cut(s) 157, 498, 1294, 1376
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 1445
AlwI GGATC 3 cut(s) 15, 176, 490
AlwNI CAGNNNCTG 3 cut(s) 907, 1082, 1568
AoxI GGCC 3 cut(s) 28, 681, 1101
ApeKI GCWGC 4 cut(s) 176, 179, 215, 1211
ApoI RAATTY 5 cut(s) 669, 707, 940, 1109, 1540
Asp700I GAANNNNTTC 2 cut(s) 456, 934
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 3 cut(s) 28, 154, 1102
AsuHPI GGTGA 2 cut(s) 620, 999
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 99
BarI GAAGNNNNNNTAC 4 cut(s) 441, 473, 1259, 1291
BbsI GAAGAC 2 cut(s) 270, 892
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 4 cut(s) 163, 191, 202, 1198
BccI CCATC 3 cut(s) 1040, 1235, 1441
BceAI ACGGC 2 cut(s) 696, 1556
BciT130I CCWGG 4 cut(s) 159, 500, 1296, 1378
BcoDI GTCTC 1 cut(s) 1445
BfaI CTAG 5 cut(s) 465, 740, 765, 1257, 1467
BfmI CTRYAG 3 cut(s) 177, 663, 972
BfrI CTTAAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 781
BisI GCNGC 5 cut(s) 177, 180, 216, 1183, 1212
BlsI GCNGC 5 cut(s) 178, 181, 217, 1184, 1213
BmcAI AGTACT 1 cut(s) 1248
Bme1390I CCNGG 4 cut(s) 159, 500, 1296, 1378
Bme18I GGWCC 1 cut(s) 154
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmgT120I GGNCC 3 cut(s) 28, 154, 1102
BmiI GGNNCC 2 cut(s) 110, 156
BmrFI CCNGG 4 cut(s) 159, 500, 1296, 1378
BmsI GCATC 2 cut(s) 202, 1352
BpiI GAAGAC 2 cut(s) 270, 892
BpmI CTGGAG 2 cut(s) 462, 911
BpuEI CTTGAG 2 cut(s) 134, 596
BsaI GGTCTC 1 cut(s) 1445
BsaJI CCNNGG 3 cut(s) 157, 1294, 1455
Bsc4I CCNNNNNNNGG 4 cut(s) 776, 907, 1295, 1578
Bse1I ACTGG 3 cut(s) 697, 894, 912
Bse3DI GCAATG 1 cut(s) 1192
BseBI CCWGG 4 cut(s) 159, 500, 1296, 1378
BseDI CCNNGG 3 cut(s) 157, 1294, 1455
BseGI GGATG 3 cut(s) 1246, 1278, 1343
BseLI CCNNNNNNNGG 4 cut(s) 776, 907, 1295, 1578
BseMI GCAATG 1 cut(s) 1192
BseMII CTCAG 2 cut(s) 641, 1074
BseNI ACTGG 3 cut(s) 697, 894, 912
BseRI GAGGAG 2 cut(s) 671, 780
BseXI GCAGC 4 cut(s) 163, 191, 202, 1198
BsgI GTGCAG 2 cut(s) 1380, 1596
BshFI GGCC 3 cut(s) 30, 683, 1103
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 99
BslFI GGGAC 2 cut(s) 140, 310
BslI CCNNNNNNNGG 4 cut(s) 776, 907, 1295, 1578
BsmAI GTCTC 1 cut(s) 1445
BsmFI GGGAC 2 cut(s) 140, 310
BsnI GGCC 3 cut(s) 30, 683, 1103
Bso31I GGTCTC 1 cut(s) 1445
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 7, 168, 495, 1163
BspACI CCGC 1 cut(s) 1182
BspANI GGCC 3 cut(s) 30, 683, 1103
BspCNI CTCAG 2 cut(s) 640, 1075
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 110, 156
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 781
BspPI GGATC 3 cut(s) 15, 176, 490
BspQI GCTCTTC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 1445
BsrDI GCAATG 1 cut(s) 1192
BsrI ACTGG 3 cut(s) 697, 894, 912
BssECI CCNNGG 3 cut(s) 157, 1294, 1455
BssMI GATC 4 cut(s) 7, 168, 495, 1163
BssT1I CCWWGG 1 cut(s) 1455
Bst2UI CCWGG 4 cut(s) 159, 500, 1296, 1378
Bst4CI ACNGT 2 cut(s) 294, 1029
Bst6I CTCTTC 2 cut(s) 462, 735
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 4 cut(s) 66, 567, 1318, 1584
BstDEI CTNAG 3 cut(s) 425, 627, 1083
BstF5I GGATG 3 cut(s) 1246, 1278, 1343
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 4 cut(s) 10, 171, 498, 1166
BstMAI GTCTC 1 cut(s) 1445
BstMBI GATC 4 cut(s) 7, 168, 495, 1163
BstMWI GCNNNNNNNGC 4 cut(s) 22, 221, 437, 452
BstNI CCWGG 4 cut(s) 159, 500, 1296, 1378
BstNSI RCATGY 1 cut(s) 1256
BstSCI CCNGG 4 cut(s) 157, 498, 1294, 1376
BstSFI CTRYAG 3 cut(s) 177, 663, 972
BstV1I GCAGC 4 cut(s) 163, 191, 202, 1198
BstV2I GAAGAC 2 cut(s) 270, 892
BstX2I RGATCY 2 cut(s) 168, 495
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 2 cut(s) 168, 495
BsuRI GGCC 3 cut(s) 30, 683, 1103
BtsCI GGATG 3 cut(s) 1246, 1278, 1343
BtsIMutI CAGTG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 4 cut(s) 66, 567, 1318, 1584
CaiI CAGNNNCTG 3 cut(s) 907, 1082, 1568
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 28, 154, 1102
Csp6I GTAC 3 cut(s) 109, 1247, 1574
CviAII CATG 5 cut(s) 40, 73, 229, 322, 1253
CviQI GTAC 3 cut(s) 109, 1247, 1574
DdeI CTNAG 3 cut(s) 425, 627, 1083
DpnI GATC 4 cut(s) 9, 170, 497, 1165
DpnII GATC 4 cut(s) 7, 168, 495, 1163
DrdI GACNNNNNNGTC 1 cut(s) 1066
DriI GACNNNNNGTC 1 cut(s) 1027
DseDI GACNNNNNNGTC 1 cut(s) 1066
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 462, 735
Eam1105I GACNNNNNGTC 1 cut(s) 1027
EarI CTCTTC 2 cut(s) 462, 735
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 1455
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 1445
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 2 cut(s) 28, 154
EcoRII CCWGG 4 cut(s) 157, 498, 1294, 1376
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 1455
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 1455
FaeI CATG 5 cut(s) 43, 76, 232, 325, 1256
FaqI GGGAC 2 cut(s) 140, 310
FatI CATG 5 cut(s) 39, 72, 228, 321, 1252
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 177, 180, 216, 1183, 1212
FokI GGATG 3 cut(s) 1253, 1265, 1330
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 5 cut(s) 177, 180, 216, 1183, 1212
FspBI CTAG 5 cut(s) 465, 740, 765, 1257, 1467
FspI TGCGCA 1 cut(s) 253
GlaI GCGC 1 cut(s) 253
GluI GCNGC 5 cut(s) 177, 180, 216, 1183, 1212
GsuI CTGGAG 2 cut(s) 462, 911
HaeIII GGCC 3 cut(s) 30, 683, 1103
HhaI GCGC 1 cut(s) 254
Hin1II CATG 5 cut(s) 43, 76, 232, 325, 1256
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HinfI GANTC 5 cut(s) 966, 998, 1331, 1391, 1594
HphI GGTGA 2 cut(s) 620, 999
Hpy166II GTNNAC 3 cut(s) 125, 770, 1475
Hpy188I TCNGA 5 cut(s) 262, 361, 630, 1078, 1558
Hpy188III TCNNGA 5 cut(s) 11, 73, 166, 271, 404
Hpy8I GTNNAC 3 cut(s) 125, 770, 1475
HpyAV CCTTC 4 cut(s) 126, 145, 332, 762
HpyCH4III ACNGT 2 cut(s) 294, 1029
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 221, 437, 452
HpyF3I CTNAG 3 cut(s) 425, 627, 1083
Hsp92II CATG 5 cut(s) 43, 76, 232, 325, 1256
HspAI GCGC 1 cut(s) 252
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 4 cut(s) 7, 168, 495, 1163
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 2 cut(s) 443, 696
Lsp1109I GCAGC 4 cut(s) 163, 191, 202, 1198
LweI GCATC 2 cut(s) 202, 1352
MaeI CTAG 5 cut(s) 465, 740, 765, 1257, 1467
MaeIII GTNAC 5 cut(s) 616, 724, 1284, 1352, 1618
MalI GATC 4 cut(s) 9, 170, 497, 1165
MboI GATC 4 cut(s) 7, 168, 495, 1163
MflI RGATCY 2 cut(s) 168, 495
MhlI GDGCHC 1 cut(s) 99
MroXI GAANNNNTTC 2 cut(s) 456, 934
MslI CAYNNNNRTG 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 4 cut(s) 159, 500, 1296, 1378
MvaI CCWGG 4 cut(s) 159, 500, 1296, 1378
MwoI GCNNNNNNNGC 4 cut(s) 22, 221, 437, 452
NdeII GATC 4 cut(s) 7, 168, 495, 1163
NlaIII CATG 5 cut(s) 43, 76, 232, 325, 1256
NlaIV GGNNCC 2 cut(s) 110, 156
NmuCI GTSAC 3 cut(s) 616, 724, 1352
NsbI TGCGCA 1 cut(s) 253
NspI RCATGY 1 cut(s) 1256
PagI TCATGA 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 462
PdmI GAANNNNTTC 2 cut(s) 456, 934
PfeI GAWTC 5 cut(s) 966, 998, 1331, 1391, 1594
PflMI CCANNNNNTGG 3 cut(s) 776, 907, 1295
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 5 cut(s) 178, 181, 217, 1184, 1213
PpuMI RGGWCCY 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 4 cut(s) 157, 498, 1294, 1376
PspGI CCWGG 4 cut(s) 157, 498, 1294, 1376
PspN4I GGNNCC 2 cut(s) 110, 156
PspPI GGNCC 3 cut(s) 28, 154, 1102
PspPPI RGGWCCY 1 cut(s) 154
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 3 cut(s) 907, 1082, 1568
PsuI RGATCY 2 cut(s) 168, 495
RsaI GTAC 3 cut(s) 110, 1248, 1575
RsaNI GTAC 3 cut(s) 109, 1247, 1574
RseI CAYNNNNRTG 1 cut(s) 699
SacI GAGCTC 1 cut(s) 99
SalI GTCGAC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 462
SatI GCNGC 5 cut(s) 177, 180, 216, 1183, 1212
Sau3AI GATC 4 cut(s) 7, 168, 495, 1163
Sau96I GGNCC 3 cut(s) 28, 154, 1102
ScaI AGTACT 1 cut(s) 1248
ScrFI CCNGG 4 cut(s) 159, 500, 1296, 1378
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 2 cut(s) 202, 1352
SfcI CTRYAG 3 cut(s) 177, 663, 972
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 3 cut(s) 32, 113, 575
SmoI CTYRAG 3 cut(s) 32, 113, 575
SsiI CCGC 1 cut(s) 1182
SspI AATATT 1 cut(s) 933
SspMI CTAG 5 cut(s) 465, 740, 765, 1257, 1467
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 4 cut(s) 157, 498, 1294, 1376
StyI CCWWGG 1 cut(s) 1455
TaaI ACNGT 2 cut(s) 294, 1029
TaqI TCGA 2 cut(s) 93, 124
TatI WGTACW 1 cut(s) 1246
TauI GCSGC 1 cut(s) 1185
TfiI GAWTC 5 cut(s) 966, 998, 1331, 1391, 1594
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 3 cut(s) 616, 724, 1352
TseI GCWGC 4 cut(s) 176, 179, 215, 1211
Tsp45I GTSAC 3 cut(s) 616, 724, 1352
TspRI CASTG 1 cut(s) 299
Van91I CCANNNNNTGG 3 cut(s) 776, 907, 1295
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 5 cut(s) 669, 707, 940, 1109, 1540
XceI RCATGY 1 cut(s) 1256
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 2 cut(s) 456, 934
XspI CTAG 5 cut(s) 465, 740, 765, 1257, 1467
ZrmI AGTACT 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.