Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006144

Physical Location & Seq

Genomic Coordinates Forward (+)

22121175 .. 22128903

Gene Structure 7729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGTCATGGAATAAAGATGCTCTTTCAGCTTATCTCCTTCGGGATGTTGTCAATGAAATTATCGCTATTCCATTACCTATTCATTCTGCTCCAGATACCTTTGTTTGGGGTCCTTCAGGATCGGGTAATTTTTTGATCAAGAGAGCTTCTTTGATTCGGACTCGGCGAAGGCGACTCAAGTGCCGATTGATTGTATTCAAGGAAGATGTGAGATTCCATGGAGAATTCGGATCCTTGTACATGATAGCAAGCTTTTGGCTCAACATTTCAACTCCATTGTTTTCCAACATATATACTTGGGAGGCTAATTTTGTGGCGGATCATCTAGCCGCACTAGCTCATAGCTCTCATAACACTTACGTATGGTTTTTCTGTTTATCTCTGCCTGTGTCCACATCATTCTATTTGGATAAGCTGACGCTCAAATCCATTCTACTCCGTACTACGGGACTGCCGAACTCCAGCGCCGTTTCTTCACTGCTTCTCCTCCAAGCTCCAGCCGCCAATTCTTCGCCGGCTCGCGGCTCGGACCTTGATCAGTGTTCGAAATTGCTGGGTTATTCACCCCAGTCACTCCACCGAAAGAGGATAGTACGGGGTTGTGGTGTTTGGGTTTTCCCTTTGCATTCATGTCCATATTTTCTGAATGGTGTTCATGTTTTTCTCAAAATCCAGTACCGACTTGAGCGTATGACCAATGAGCTCAACGACCTCAAGCAACGCGGAATTTTCACGCGCAGAGAGATATCTGAGATTGTCAAGAAGCGTACCAAGTTTGAGTACCGGCTCAAGCGTCCGAGCCCACTCAAGGAGGACTACCTTGCCTACATTGACTATGAGACTCAGCTTGATTCACTTCGTCGACTAAGAAAAAAATCAGTGATGCGTGAGCTGCAAAAGCAGGGCCTCAAGACCACAAAGAAGATGAAGAAGTCAGTTTCAGACTTTGCTGGAATCATGAGGATTGTTGATATTTATAGGCTTGCAGTCATGAGGTTTAAGGGAGATATTGAGCTCTGGTTTCGGTACCTTGAGTTTTGTCGACGGCGAAGGAATGGTAGAATGAAGAAGGTCCTGGCTGATGCAATCAAATTTCACCCAAAGGTCCCGGGTGTCTGGATCTATGCTGCAGCTTGGGAATTTGACCATAATTTGAATGTTGAAGCTGCCCGTGCTATCATGCAAAATGGGTTAAGAGTTTGCGCAACTTCAGAAGACCTTTGGATAGAGTATCTTCGCATGGAACTCACATTCCTCAATAAATTAAAGGCTCGGAAGGTTGCTCTTGGAGAGGATGAGGGCACTTTTGCCCGTGATCAGATAAGTTCTGATAAGAAACAGTGGAGAGATGAAAACAAAGACTTATTCATGTCCCTTAATGACGAAGGAGAAAATAATGAAAGGTCAGATGATGAAAATGAAAAGTCAATGAAGAAAATTAGTAAGTTTCAAGAGCAAGCAACTGACTTGCTTAATTCGGAAGCAATACGTAAGGAAATACTAAGCGATATGAAGAGAGCCTTCTCAACAGAACCAGAGTATTGGGATTGGCTTGCAAGACTTGAATATAATCCTGCAAGTAGGGAAGATATTAGTGAAGATGTCACATCTCAGATAGAAAAAACAGTTCAGGTTTACGAGGAGGCTATAGAAGTTTTACCTACAGCCATAATGCTCAACCATTATGCGAAATTTTTGAATGGTGTTGTCACTCTTCTAAAACTTGAAAACAAGCCTTCTGGGTTAGCTAGTCCATCTGCCGGTTATATTCCTCTTCTTTTGAGGGCTTACGAAAAGGTTAAAACTATGGGGTATATTGATGAGGATCTTGCTTGTCAGCATATTTCATTTCTTCTGCAACTTGGAAGACTAGAGGAAGCCCAGAAACTGGCAGAAAATCTTTGTTGTGGAAAATTTTCAAATTCAATGAAGTTATGGCTATTAAGAGTCTCTGTAGGTATTAGACACTTTACAAGGGATTCCATTTCACCGAGTAAAGCTGACCGACTATCCATCTTTGAACTTCTTAAAGATGTTTTGACAAGAGTGTCCATTTCAGAAGCTGAGGACCTGTGGTTAATGGCCCTTAAATTCTTTGCAAATCAAAAACATTACTTTGACAAGTTGGTTGAGATTTCTGTTAGATCATTGATAAAAGATGGCGGCAGTGAACAAGGATTTTCCCTCTCTGCTGCTATTGTGCATTTTGTTCTTCAAAAGGATGGAGTACCGCATGCTAGAGAGATGTATAAACGCTTCATTGCTTTACCACACCCTGGGCTTGCACTATATAGAGCCTGCATTGAATTGGAATCAAACCTTGCATCCATTGGTGACAAAGATAGCCTCGTCAATGCCAGGAAATTATATGAATCTGCACTGAAAGCTTATGACCAAGATTTGAGCTTATGGCGAGATTACTATCTGATGGAGACCAAGATGGGAACATCAGAAACAGCTTCTGCCGTACATTGGCAAGCACGCAAGATTCTAAAAGACACGACTGCACTTGTTACACCAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

842

Amino Acids

96.99

Weight (kDa)

9.18

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3_assoc_6	PF08640	228 - 301	9.8e-26	U3 small nucleolar RNA-associated protein 6
UTP6_C	PF24892	540 - 831	2e-17	U3 small nucleolar RNA-associated protein 6 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28200
fragaria_vesca	FvH4_5g29980 FvH4_5g29980 FvH4_5g29980
malus_domestica	MD08G1079900.v1.1 MD15G1066800.v1.1
prunus_persica	Prupe.4G224400_v2.0.a1
pyrus_communis	pycom08g06600 pycom15g06340
rosa_chinensis	RchiOBHm_Chr7g0223851 RchiOBHm_Chr7g0223951
rosa_laevigata	RLG00000001926
rosa_multiflora	Rmu_sc0002469.1_g000009 Rmu_sc0004540.1_g000012 Rmu_sc0004540.1_g000016
rosa_roxburghii	Rroxscaffold_3G00235230
rosa_rugosa	Rorug07G0220900
rosa_samantha	Rh7AG363500 Rh7AG364100 Rh7BG354600 Rh7BG355500 Rh7CG382100 Rh7CG382900 Rh7DG358100 Rh7DG358600
rosa_wichuraiana	Rw7G030850 Rw7G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2047
Acc16I	TGCGCA	1 cut(s)	1204
Acc65I	GGTACC	1 cut(s)	1026
AccB1I	GGYRCC	1 cut(s)	1026
AccB7I	CCANNNNNTGG	2 cut(s)	1888, 2276
AccI	GTMKAC	2 cut(s)	862, 1042
AccII	CGCG	3 cut(s)	522, 723, 736
AciI	CCGC	7 cut(s)	317, 330, 501, 522, 723, 2163, 2231
AclWI	GGATC	6 cut(s)	127, 225, 238, 327, 1127, 1833
AcsI	RAATTY	8 cut(s)	224, 726, 1091, 1139, 1691, 1913, 1921, 2090
AcuI	CTGAAG	2 cut(s)	99, 1194
AfaI	GTAC	9 cut(s)	239, 442, 594, 677, 769, 782, 1028, 2229, 2469
AfiI	CCNNNNNNNGG	8 cut(s)	105, 445, 521, 808, 1760, 1888, 2276, 2472
AjnI	CCWGG	3 cut(s)	1074, 2275, 2357
AloI	GAACNNNNNNTCC	2 cut(s)	1236, 1268
Alw21I	GWGCWC	2 cut(s)	705, 1017
Alw26I	GTCTC	3 cut(s)	833, 1954, 2426
AlwI	GGATC	6 cut(s)	127, 225, 238, 327, 1127, 1833
AlwNI	CAGNNNCTG	3 cut(s)	1888, 2063, 2462
Ama87I	CYCGRG	1 cut(s)	1108
AoxI	GGCC	2 cut(s)	904, 2082
ApeKI	GCWGC	5 cut(s)	892, 1127, 1130, 1166, 2192
ApoI	RAATTY	8 cut(s)	224, 726, 1091, 1139, 1691, 1913, 1921, 2090
Asp700I	GAANNNNTTC	1 cut(s)	1915
Asp718I	GGTACC	1 cut(s)	1026
AspLEI	GCGC	3 cut(s)	467, 738, 1205
AspS9I	GGNCC	7 cut(s)	110, 529, 904, 1072, 1105, 2068, 2083
AsuC2I	CCSGG	2 cut(s)	1109, 1110
AsuHPI	GGTGA	4 cut(s)	555, 1088, 1980, 2345
AsuII	TTCGAA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	1108
AvaII	GGWCC	5 cut(s)	110, 529, 1072, 1105, 2068
BaeGI	GKGCMC	1 cut(s)	1304
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BamHI	GGATCC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	1026
BanII	GRGCYC	3 cut(s)	705, 803, 1017
BarI	GAAGNNNNNNTAC	2 cut(s)	2240, 2272
BbsI	GAAGAC	2 cut(s)	1221, 1873
Bbv12I	GWGCWC	2 cut(s)	705, 1017
BbvCI	CCTCAGC	1 cut(s)	2064
BbvI	GCAGC	5 cut(s)	879, 1114, 1142, 1153, 2179
BccI	CCATC	6 cut(s)	1762, 2021, 2153, 2216, 2422, 2434
BceAI	ACGGC	3 cut(s)	452, 1061, 2450
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	3 cut(s)	1076, 2277, 2359
BclI	TGATCA	3 cut(s)	135, 535, 1315
BcnI	CCSGG	2 cut(s)	1109, 1110
BcoDI	GTCTC	3 cut(s)	833, 1954, 2426
BfaI	CTAG	5 cut(s)	326, 335, 1749, 1871, 2238
BfmI	CTRYAG	4 cut(s)	1128, 1647, 1662, 1953
BfoI	RGCGCY	1 cut(s)	468
BisI	GCNGC	9 cut(s)	330, 501, 523, 893, 1128, 1131, 1167, 2164, 2193
BlsI	GCNGC	9 cut(s)	331, 502, 524, 894, 1129, 1132, 1168, 2165, 2194
Bme1390I	CCNGG	5 cut(s)	1076, 1109, 1110, 2277, 2359
Bme18I	GGWCC	5 cut(s)	110, 529, 1072, 1105, 2068
BmeT110I	CYCGRG	1 cut(s)	1108
BmgT120I	GGNCC	7 cut(s)	110, 529, 904, 1072, 1105, 2068, 2083
BmiI	GGNNCC	4 cut(s)	111, 232, 1028, 1107
BmrFI	CCNGG	5 cut(s)	1076, 1109, 1110, 2277, 2359
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	4 cut(s)	7, 873, 1072, 2333
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	2 cut(s)	1221, 1873
BpmI	CTGGAG	3 cut(s)	75, 445, 480
Bpu10I	CCTNAGC	1 cut(s)	2064
Bpu14I	TTCGAA	1 cut(s)	545
BpuEI	CTTGAG	7 cut(s)	161, 698, 704, 773, 791, 893, 1052
BpuMI	CCSGG	2 cut(s)	1109, 1110
BsaAI	YACGTR	2 cut(s)	361, 1490
BsaBI	GATNNNNATC	2 cut(s)	1824, 2421
BsaI	GGTCTC	1 cut(s)	2426
BsaJI	CCNNGG	4 cut(s)	217, 1108, 2275, 2276
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	8 cut(s)	105, 445, 521, 808, 1760, 1888, 2276, 2472
Bse118I	RCCGGY	3 cut(s)	514, 783, 1760
Bse1I	ACTGG	3 cut(s)	568, 673, 1893
Bse3DI	GCAATG	1 cut(s)	2259
Bse8I	GATNNNNATC	2 cut(s)	1824, 2421
BseBI	CCWGG	3 cut(s)	1076, 2277, 2359
BseDI	CCNNGG	4 cut(s)	217, 1108, 2275, 2276
BseGI	GGATG	4 cut(s)	49, 1300, 2227, 2324
BseJI	GATNNNNATC	2 cut(s)	1824, 2421
BseLI	CCNNNNNNNGG	8 cut(s)	105, 445, 521, 808, 1760, 1888, 2276, 2472
BseMI	GCAATG	1 cut(s)	2259
BseMII	CTCAG	4 cut(s)	741, 857, 1625, 2055
BseNI	ACTGG	3 cut(s)	568, 673, 1893
BseRI	GAGGAG	2 cut(s)	476, 1655
BseSI	GKGCMC	1 cut(s)	1304
BseXI	GCAGC	5 cut(s)	879, 1114, 1142, 1153, 2179
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	2 cut(s)	2361, 2490
Bsh1236I	CGCG	3 cut(s)	522, 723, 736
BshFI	GGCC	2 cut(s)	906, 2084
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	2 cut(s)	705, 1017
BsiHKCI	CYCGRG	1 cut(s)	1108
BsiSI	CCGG	4 cut(s)	515, 784, 1109, 1761
BslFI	GGGAC	3 cut(s)	462, 1091, 1357
BslI	CCNNNNNNNGG	8 cut(s)	105, 445, 521, 808, 1760, 1888, 2276, 2472
BsmAI	GTCTC	3 cut(s)	833, 1954, 2426
BsmFI	GGGAC	3 cut(s)	462, 1091, 1357
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	906, 2084
Bso31I	GGTCTC	1 cut(s)	2426
BsoBI	CYCGRG	1 cut(s)	1108
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	4 cut(s)	705, 803, 1017, 1304
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	7 cut(s)	317, 330, 501, 522, 723, 2163, 2231
BspANI	GGCC	2 cut(s)	906, 2084
BspCNI	CTCAG	4 cut(s)	742, 856, 1624, 2056
BspFNI	CGCG	3 cut(s)	522, 723, 736
BspHI	TCATGA	2 cut(s)	957, 990
BspLI	GGNNCC	4 cut(s)	111, 232, 1028, 1107
BspMAI	CTGCAG	1 cut(s)	1132
BspPI	GGATC	6 cut(s)	127, 225, 238, 327, 1127, 1833
BspT104I	TTCGAA	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	1026
BspTNI	GGTCTC	1 cut(s)	2426
BsrDI	GCAATG	1 cut(s)	2259
BsrFI	RCCGGY	3 cut(s)	514, 783, 1760
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	568, 673, 1893
BssAI	RCCGGY	3 cut(s)	514, 783, 1760
BssECI	CCNNGG	4 cut(s)	217, 1108, 2275, 2276
BssMI	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	3 cut(s)	1076, 2277, 2359
Bst4CI	ACNGT	2 cut(s)	1341, 1627
Bst6I	CTCTTC	3 cut(s)	1508, 1719, 1779
BstAUI	TGTACA	1 cut(s)	237
BstBAI	YACGTR	2 cut(s)	361, 1490
BstBI	TTCGAA	1 cut(s)	545
BstDEI	CTNAG	6 cut(s)	750, 843, 866, 1502, 1611, 2064
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	4 cut(s)	49, 1300, 2227, 2324
BstFNI	CGCG	3 cut(s)	522, 723, 736
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	3 cut(s)	467, 738, 1205
BstKTI	GATC	9 cut(s)	122, 138, 233, 322, 538, 1122, 1318, 1828, 2147
BstMAI	GTCTC	3 cut(s)	833, 1954, 2426
BstMBI	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 335, 500, 892, 898, 1172, 2384
BstNI	CCWGG	3 cut(s)	1076, 2277, 2359
BstNSI	RCATGY	1 cut(s)	2237
BstSCI	CCNGG	5 cut(s)	1074, 1107, 1108, 2275, 2357
BstSFI	CTRYAG	4 cut(s)	1128, 1647, 1662, 1953
BstSLI	GKGCMC	1 cut(s)	1304
BstSNI	TACGTA	2 cut(s)	361, 1490
BstUI	CGCG	3 cut(s)	522, 723, 736
BstV1I	GCAGC	5 cut(s)	879, 1114, 1142, 1153, 2179
BstV2I	GAAGAC	2 cut(s)	1221, 1873
BstX2I	RGATCY	3 cut(s)	230, 1119, 1825
BstXI	CCANNNNNNTGG	1 cut(s)	1542
BstYI	RGATCY	3 cut(s)	230, 1119, 1825
BsuRI	GGCC	2 cut(s)	906, 2084
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	49, 1300, 2227, 2324
BtsI	GCAGTG	2 cut(s)	476, 2173
BtsIMutI	CAGTG	6 cut(s)	476, 545, 885, 1346, 2173, 2378
CaiI	CAGNNNCTG	3 cut(s)	1888, 2063, 2462
CciI	TCATGA	2 cut(s)	957, 990
CfoI	GCGC	3 cut(s)	467, 738, 1205
Cfr10I	RCCGGY	3 cut(s)	514, 783, 1760
Cfr13I	GGNCC	7 cut(s)	110, 529, 904, 1072, 1105, 2068, 2083
Cfr9I	CCCGGG	1 cut(s)	1108
CseI	GACGC	2 cut(s)	427, 782
Csp6I	GTAC	9 cut(s)	238, 441, 593, 676, 768, 781, 1027, 2228, 2468
CviQI	GTAC	9 cut(s)	238, 441, 593, 676, 768, 781, 1027, 2228, 2468
DdeI	CTNAG	6 cut(s)	750, 843, 866, 1502, 1611, 2064
DpnI	GATC	9 cut(s)	121, 137, 232, 321, 537, 1121, 1317, 1827, 2146
DpnII	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
DrdI	GACNNNNNNGTC	1 cut(s)	2047
DseDI	GACNNNNNNGTC	1 cut(s)	2047
Eam1104I	CTCTTC	3 cut(s)	1508, 1719, 1779
EarI	CTCTTC	3 cut(s)	1508, 1719, 1779
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	2 cut(s)	703, 1015
Eco105I	TACGTA	2 cut(s)	361, 1490
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	3 cut(s)	705, 803, 1017
Eco31I	GGTCTC	1 cut(s)	2426
Eco32I	GATATC	1 cut(s)	747
Eco47I	GGWCC	5 cut(s)	110, 529, 1072, 1105, 2068
Eco53kI	GAGCTC	2 cut(s)	703, 1015
Eco57I	CTGAAG	2 cut(s)	99, 1194
Eco88I	CYCGRG	1 cut(s)	1108
EcoICRI	GAGCTC	2 cut(s)	703, 1015
EcoO109I	RGGNCCY	5 cut(s)	110, 904, 1072, 1105, 2068
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	1074, 2275, 2357
EcoRV	GATATC	1 cut(s)	747
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	3 cut(s)	705, 803, 1017
ErhI	CCWWGG	1 cut(s)	217
FalI	AAGNNNNNCTT	3 cut(s)	38, 1505, 1537
FaqI	GGGAC	3 cut(s)	462, 1091, 1357
FbaI	TGATCA	3 cut(s)	135, 535, 1315
FblI	GTMKAC	2 cut(s)	862, 1042
Fnu4HI	GCNGC	9 cut(s)	330, 501, 523, 893, 1128, 1131, 1167, 2164, 2193
FokI	GGATG	4 cut(s)	56, 1307, 2234, 2311
FriOI	GRGCYC	3 cut(s)	705, 803, 1017
Fsp4HI	GCNGC	9 cut(s)	330, 501, 523, 893, 1128, 1131, 1167, 2164, 2193
FspBI	CTAG	5 cut(s)	326, 335, 1749, 1871, 2238
FspI	TGCGCA	1 cut(s)	1204
GlaI	GCGC	3 cut(s)	466, 737, 1204
GluI	GCNGC	9 cut(s)	330, 501, 523, 893, 1128, 1131, 1167, 2164, 2193
GsaI	CCCAGC	1 cut(s)	557
GsuI	CTGGAG	3 cut(s)	75, 445, 480
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	906, 2084
HapII	CCGG	4 cut(s)	515, 784, 1109, 1761
HgaI	GACGC	2 cut(s)	427, 782
HhaI	GCGC	3 cut(s)	467, 738, 1205
Hin6I	GCGC	3 cut(s)	465, 736, 1203
HinP1I	GCGC	3 cut(s)	465, 736, 1203
HincII	GTYRAC	2 cut(s)	863, 1043
HindII	GTYRAC	2 cut(s)	863, 1043
HindIII	AAGCTT	2 cut(s)	250, 2385
HpaII	CCGG	4 cut(s)	515, 784, 1109, 1761
HphI	GGTGA	4 cut(s)	555, 1088, 1980, 2345
Hpy166II	GTNNAC	5 cut(s)	393, 863, 1043, 1636, 2171
Hpy8I	GTNNAC	5 cut(s)	393, 863, 1043, 1636, 2171
Hpy99I	CGWCG	2 cut(s)	864, 1047
HpyAV	CCTTC	9 cut(s)	47, 123, 162, 1044, 1063, 1270, 1379, 1531, 1746
HpyCH4III	ACNGT	2 cut(s)	1341, 1627
HpyCH4IV	ACGT	2 cut(s)	360, 1489
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 335, 500, 892, 898, 1172, 2384
HpyF3I	CTNAG	6 cut(s)	750, 843, 866, 1502, 1611, 2064
HpySE526I	ACGT	2 cut(s)	360, 1489
HspAI	GCGC	3 cut(s)	465, 736, 1203
KpnI	GGTACC	1 cut(s)	1030
KroI	GCCGGC	1 cut(s)	514
KroNI	GCCGGC	1 cut(s)	516
Ksp22I	TGATCA	3 cut(s)	135, 535, 1315
Kzo9I	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
LmnI	GCTCC	2 cut(s)	94, 499
Lsp1109I	GCAGC	5 cut(s)	879, 1114, 1142, 1153, 2179
LweI	GCATC	4 cut(s)	7, 873, 1072, 2333
MaeI	CTAG	5 cut(s)	326, 335, 1749, 1871, 2238
MaeII	ACGT	2 cut(s)	360, 1489
MaeIII	GTNAC	5 cut(s)	570, 1603, 1708, 2333, 2512
MalI	GATC	9 cut(s)	121, 137, 232, 321, 537, 1121, 1317, 1827, 2146
MboI	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
MflI	RGATCY	3 cut(s)	230, 1119, 1825
MhlI	GDGCHC	4 cut(s)	705, 803, 1017, 1304
MlyI	GAGTC	4 cut(s)	154, 168, 835, 1956
MmeI	TCCRAC	1 cut(s)	309
MroNI	GCCGGC	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	1915
MspI	CCGG	4 cut(s)	515, 784, 1109, 1761
MspR9I	CCNGG	5 cut(s)	1076, 1109, 1110, 2277, 2359
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	1076, 2277, 2359
MvnI	CGCG	3 cut(s)	522, 723, 736
MwoI	GCNNNNNNNGC	7 cut(s)	26, 335, 500, 892, 898, 1172, 2384
NaeI	GCCGGC	1 cut(s)	516
NciI	CCSGG	2 cut(s)	1109, 1110
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
NgoMIV	GCCGGC	1 cut(s)	514
NlaIV	GGNNCC	4 cut(s)	111, 232, 1028, 1107
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	4 cut(s)	570, 1603, 1708, 2333
NsbI	TGCGCA	1 cut(s)	1204
NspI	RCATGY	1 cut(s)	2237
NspV	TTCGAA	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	2237
PagI	TCATGA	2 cut(s)	957, 990
PasI	CCCWGGG	1 cut(s)	2276
PcsI	WCGNNNNNNNCGW	3 cut(s)	163, 169, 452
PctI	GAATGC	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	1915
PfeI	GAWTC	8 cut(s)	154, 213, 851, 954, 1979, 2312, 2372, 2488
PflMI	CCANNNNNTGG	2 cut(s)	1888, 2276
PkrI	GCNGC	9 cut(s)	331, 502, 524, 894, 1129, 1132, 1168, 2165, 2194
PleI	GAGTC	4 cut(s)	154, 168, 835, 1955
PpsI	GAGTC	4 cut(s)	154, 168, 835, 1955
Ppu21I	YACGTR	2 cut(s)	361, 1490
PpuMI	RGGWCCY	4 cut(s)	110, 1072, 1105, 2068
Psp124BI	GAGCTC	2 cut(s)	705, 1017
Psp5II	RGGWCCY	4 cut(s)	110, 1072, 1105, 2068
Psp6I	CCWGG	3 cut(s)	1074, 2275, 2357
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	3 cut(s)	1074, 2275, 2357
PspN4I	GGNNCC	4 cut(s)	111, 232, 1028, 1107
PspPI	GGNCC	7 cut(s)	110, 529, 904, 1072, 1105, 2068, 2083
PspPPI	RGGWCCY	4 cut(s)	110, 1072, 1105, 2068
PstI	CTGCAG	1 cut(s)	1132
PstNI	CAGNNNCTG	3 cut(s)	1888, 2063, 2462
PsuI	RGATCY	3 cut(s)	230, 1119, 1825
RsaI	GTAC	9 cut(s)	239, 442, 594, 677, 769, 782, 1028, 2229, 2469
RsaNI	GTAC	9 cut(s)	238, 441, 593, 676, 768, 781, 1027, 2228, 2468
SacI	GAGCTC	2 cut(s)	705, 1017
SalI	GTCGAC	2 cut(s)	861, 1041
SatI	GCNGC	9 cut(s)	330, 501, 523, 893, 1128, 1131, 1167, 2164, 2193
Sau3AI	GATC	9 cut(s)	119, 135, 230, 319, 535, 1119, 1315, 1825, 2144
Sau96I	GGNCC	7 cut(s)	110, 529, 904, 1072, 1105, 2068, 2083
SchI	GAGTC	4 cut(s)	154, 168, 835, 1956
ScrFI	CCNGG	5 cut(s)	1076, 1109, 1110, 2277, 2359
SduI	GDGCHC	4 cut(s)	705, 803, 1017, 1304
SfaNI	GCATC	4 cut(s)	7, 873, 1072, 2333
SfcI	CTRYAG	4 cut(s)	1128, 1647, 1662, 1953
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	5 cut(s)	110, 529, 1072, 1105, 2068
SmaI	CCCGGG	1 cut(s)	1110
SmlI	CTYRAG	7 cut(s)	176, 683, 713, 788, 806, 908, 1031
SmoI	CTYRAG	7 cut(s)	176, 683, 713, 788, 806, 908, 1031
SnaBI	TACGTA	2 cut(s)	361, 1490
SphI	GCATGC	1 cut(s)	2237
SsiI	CCGC	7 cut(s)	317, 330, 501, 522, 723, 2163, 2231
SspMI	CTAG	5 cut(s)	326, 335, 1749, 1871, 2238
SstI	GAGCTC	2 cut(s)	705, 1017
StyD4I	CCNGG	5 cut(s)	1074, 1107, 1108, 2275, 2357
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	1341, 1627
TaiI	ACGT	2 cut(s)	363, 1492
TaqI	TCGA	3 cut(s)	545, 862, 1042
TaqII	GACCGA	1 cut(s)	2019
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	4 cut(s)	332, 503, 525, 2166
TfiI	GAWTC	8 cut(s)	154, 213, 851, 954, 1979, 2312, 2372, 2488
TscAI	CASTG	6 cut(s)	483, 545, 885, 1346, 2173, 2385
TseFI	GTSAC	4 cut(s)	570, 1603, 1708, 2333
TseI	GCWGC	5 cut(s)	892, 1127, 1130, 1166, 2192
Tsp45I	GTSAC	4 cut(s)	570, 1603, 1708, 2333
TspGWI	ACGGA	1 cut(s)	428
TspMI	CCCGGG	1 cut(s)	1108
TspRI	CASTG	6 cut(s)	483, 545, 885, 1346, 2173, 2385
Van91I	CCANNNNNTGG	2 cut(s)	1888, 2276
VpaK11BI	GGWCC	5 cut(s)	110, 529, 1072, 1105, 2068
XapI	RAATTY	8 cut(s)	224, 726, 1091, 1139, 1691, 1913, 1921, 2090
XceI	RCATGY	1 cut(s)	2237
XmaI	CCCGGG	1 cut(s)	1108
XmiI	GTMKAC	2 cut(s)	862, 1042
XmnI	GAANNNNTTC	1 cut(s)	1915
XspI	CTAG	5 cut(s)	326, 335, 1749, 1871, 2238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.