Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006144

Physical Location & Seq

Genomic Coordinates Forward (+)

47762809 .. 47763790

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG358600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGGATCGTGAGCTGCAAAAGCAGGGCCTTAAGACCATGAAGAAGATGAAGAAGTCAGTTTCGGACTTTGCTGGTATCATGAGGATTGTTGATATTTATAGGCTTGCAGTCATGAGGTTTAAGGGAGATATCGAGCTCTGGTTTCGGTACCTTGAGTTCTGTCGACAGCGAAGGAATGGTAGAATGAAGAAGGTCCTGGCTGATGCAATCAAATTTCACCCAAAGGTCCCTGGTATCTGGATCTATGCTGCAGCTTGGGATTTTGACCATAATTTGAATGTTGAAGCTGCCCGTGCTATCATGCAAAATGGGTTAAGAGTTTGCGCAACTTCAGAAGACCTCTGGATAGAGTATCTTCGCATGGAACTCACATTCCTCAATAAATTAAAGGCTCGGAAGGTTGCTCTTGGAGAGGATGAGGGCACTTTTGCCCGTGATCAGATAAGTTTGGATAAGCAACAGTGGAGAGATGAGAACAAAGACTTATTCATGTCCCTTAATGACGAAGGAGAAAATAATGAAAGGTCAGATGATGAAAATGAAAAGTCAATAAAGAAAATTAGTAAGTTTCAAGAGCAAGGTTTTAGCATACTAAGAGCCATATATGCTGGAGCAGTAGAAGCTCTTCCCTCTAGTTTTAGTGTGAGAAAACCTTTTTTGGAGATCCTGGAAGCAACTGACTTGGTTAATTCGTATGGAATACGTAAGGAAATACTAAGTGACATGAAGAGAGACTTCTCAACAGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

251

Amino Acids

29.33

Weight (kDa)

8.69

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28200
fragaria_vesca	FvH4_5g29980 FvH4_5g29980 FvH4_5g29980
malus_domestica	MD08G1079900.v1.1 MD15G1066800.v1.1
prunus_persica	Prupe.4G224400_v2.0.a1
pyrus_communis	pycom08g06600 pycom15g06340
rosa_chinensis	RchiOBHm_Chr7g0223851 RchiOBHm_Chr7g0223951
rosa_laevigata	RLG00000001926
rosa_multiflora	Rmu_sc0002469.1_g000009 Rmu_sc0004540.1_g000012 Rmu_sc0004540.1_g000016
rosa_roxburghii	Rroxscaffold_3G00235230
rosa_rugosa	Rorug07G0220900
rosa_samantha	Rh7AG363500 Rh7AG364100 Rh7BG354600 Rh7BG355500 Rh7CG382100 Rh7CG382900 Rh7DG358100 Rh7DG358600
rosa_wichuraiana	Rw7G030850 Rw7G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	328
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	15, 251, 661
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	280, 287, 575
AjnI	CCWGG	3 cut(s)	198, 232, 669
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	16, 139, 257, 290, 626
AluI	AGCT	5 cut(s)	16, 139, 257, 290, 626
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	3 cut(s)	15, 251, 661
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	4 cut(s)	16, 251, 254, 290
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	28, 196, 229
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	196, 229
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	3, 238, 266, 277
BciT130I	CCWGG	3 cut(s)	200, 234, 671
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	4 cut(s)	17, 252, 255, 291
BlsI	GCNGC	4 cut(s)	18, 253, 256, 292
Bme1390I	CCNGG	3 cut(s)	200, 234, 671
Bme18I	GGWCC	2 cut(s)	196, 229
BmgT120I	GGNCC	3 cut(s)	28, 196, 229
BmiI	GGNNCC	2 cut(s)	152, 231
BmrFI	CCNGG	3 cut(s)	200, 234, 671
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	200, 234, 671
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	3, 238, 266, 277
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	215, 481
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	2 cut(s)	215, 481
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	141, 428
Bsp143I	GATC	4 cut(s)	7, 243, 439, 666
BspANI	GGCC	1 cut(s)	30
BspHI	TCATGA	2 cut(s)	81, 114
BspLI	GGNNCC	2 cut(s)	152, 231
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	3 cut(s)	15, 251, 661
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	4 cut(s)	7, 243, 439, 666
Bst2UI	CCWGG	3 cut(s)	200, 234, 671
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	2 cut(s)	633, 725
BstAFI	CTTAAG	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	596, 719
BstF5I	GGATG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	10, 246, 442, 669
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	4 cut(s)	7, 243, 439, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 296, 608, 623
BstNI	CCWGG	3 cut(s)	200, 234, 671
BstSCI	CCNGG	3 cut(s)	198, 232, 669
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	707
BstV1I	GCAGC	4 cut(s)	3, 238, 266, 277
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	243, 666
BstYI	RGATCY	2 cut(s)	243, 666
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	2 cut(s)	81, 114
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	3 cut(s)	28, 196, 229
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	7 cut(s)	40, 82, 115, 304, 364, 493, 727
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	596, 719
DpnI	GATC	4 cut(s)	9, 245, 441, 668
DpnII	GATC	4 cut(s)	7, 243, 439, 666
Eam1104I	CTCTTC	2 cut(s)	633, 725
EarI	CTCTTC	2 cut(s)	633, 725
Ecl136II	GAGCTC	1 cut(s)	139
Eco105I	TACGTA	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	196, 229
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	3 cut(s)	28, 196, 229
EcoRII	CCWGG	3 cut(s)	198, 232, 669
EcoRV	GATATC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	7 cut(s)	43, 85, 118, 307, 367, 496, 730
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	2 cut(s)	215, 481
FatI	CATG	7 cut(s)	39, 81, 114, 303, 363, 492, 726
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	17, 252, 255, 291
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	17, 252, 255, 291
FspBI	CTAG	1 cut(s)	636
FspI	TGCGCA	1 cut(s)	328
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	17, 252, 255, 291
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	7 cut(s)	43, 85, 118, 307, 367, 496, 730
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	5 cut(s)	67, 337, 399, 444, 532
Hpy188III	TCNNGA	6 cut(s)	11, 82, 115, 241, 346, 575
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	168, 187, 394, 503
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	19, 110, 209, 254, 307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 296, 608, 623
HpyF3I	CTNAG	2 cut(s)	596, 719
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	7 cut(s)	43, 85, 118, 307, 367, 496, 730
HspAI	GCGC	1 cut(s)	327
KpnI	GGTACC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	7, 243, 439, 666
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	4 cut(s)	3, 238, 266, 277
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	4 cut(s)	9, 245, 441, 668
MboI	GATC	4 cut(s)	7, 243, 439, 666
MboII	GAAGA	8 cut(s)	55, 58, 64, 202, 350, 350, 620, 742
MflI	RGATCY	2 cut(s)	243, 666
MhlI	GDGCHC	2 cut(s)	141, 428
MluCI	AATT	5 cut(s)	215, 274, 386, 561, 691
MnlI	CCTC	7 cut(s)	78, 111, 353, 389, 409, 415, 643
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	6 cut(s)	33, 123, 317, 389, 501, 690
MspCI	CTTAAG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	200, 234, 671
MvaI	CCWGG	3 cut(s)	200, 234, 671
MwoI	GCNNNNNNNGC	4 cut(s)	22, 296, 608, 623
NdeII	GATC	4 cut(s)	7, 243, 439, 666
NlaIII	CATG	7 cut(s)	43, 85, 118, 307, 367, 496, 730
NlaIV	GGNNCC	2 cut(s)	152, 231
NmuCI	GTSAC	1 cut(s)	722
NsbI	TGCGCA	1 cut(s)	328
PagI	TCATGA	2 cut(s)	81, 114
PciSI	GCTCTTC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	627
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	4 cut(s)	18, 253, 256, 292
Ppu21I	YACGTR	1 cut(s)	707
PpuMI	RGGWCCY	2 cut(s)	196, 229
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	2 cut(s)	196, 229
Psp6I	CCWGG	3 cut(s)	198, 232, 669
PspGI	CCWGG	3 cut(s)	198, 232, 669
PspN4I	GGNNCC	2 cut(s)	152, 231
PspPI	GGNCC	3 cut(s)	28, 196, 229
PspPPI	RGGWCCY	2 cut(s)	196, 229
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	243, 666
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	6 cut(s)	33, 123, 317, 389, 501, 690
SatI	GCNGC	4 cut(s)	17, 252, 255, 291
Sau3AI	GATC	4 cut(s)	7, 243, 439, 666
Sau96I	GGNCC	3 cut(s)	28, 196, 229
ScrFI	CCNGG	3 cut(s)	200, 234, 671
SduI	GDGCHC	2 cut(s)	141, 428
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	196, 229
SmlI	CTYRAG	2 cut(s)	32, 155
SmoI	CTYRAG	2 cut(s)	32, 155
SnaBI	TACGTA	1 cut(s)	707
Sse9I	AATT	5 cut(s)	215, 274, 386, 561, 691
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	198, 232, 669
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	135, 166
TasI	AATT	5 cut(s)	215, 274, 386, 561, 691
Tru1I	TTAA	6 cut(s)	33, 123, 317, 389, 501, 690
Tru9I	TTAA	6 cut(s)	33, 123, 317, 389, 501, 690
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	4 cut(s)	16, 251, 254, 290
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	8 cut(s)	56, 65, 203, 481, 537, 552, 558, 743
TspRI	CASTG	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	196, 229
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.