Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002469.1

Orthogroup ID

OG0006144

Physical Location & Seq

Genomic Coordinates Forward (+)

30079 .. 34302

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002469.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

atgaaaaaggagccaaaacccgggcaatgggcccttttcgacgctcaaatccattctactccgtactacgggactgccgaactccagcgccgtttcttcactgcttctccttctctccgtctccaagctccagccgccaattcttccgttcttcggcggctcgccgcctggaccttgatcagtgttcgaaattgctgggttattcactccagtcactccaccgaaagagtccagtaccgacttgagcgtatgaccaatgagctcaatgatctcgagcaacgcggaattttcacgcgcagagagatatctgagattgtcaagaagcgtaccaagtttgagtaccggctcaagcgtccgagcccactcaaggaggactaccttgcctacattgactacgagactcagcttgattcactccgtcgactaagaaaaaaatcagtgatgcgtgagctgcaaaagcagggcctcaagaccacaaagaagatgaagaagtcagtttcagactttgctggaatcatgaggattgttgatatttataggcttgcagtcatgaggtttaagggagatattgagctctggtttcggtaccttgagttttgtcgacagcgaaggaatggtagaatgaagaaggtcctggctgatgcaatcaaatttcacccaaaggtcccgggtgtctggatctatgctgcagcttgggaatttgaccataatttgaatgttgaagctgcccgtgctatcatgcaaaatgggttaagagtttgcgcaacttcagaagacctctggatagagtatcttcgcatggaactcacattcctcaataaattaaaggctcggaaggttgctcttggagaggatgagggcacttttacccatgatcagataagttctgataagaaacagtggagagatgaaaacaaagacttattcatgtcccttaatgacgaaggagaaaataatgaaaggtcagatgatgaaaatgaaaagtcaatgaagaaaattagtaagtttcaagagcaaggttttagcatactaagaaccatatatgctggagcagtagaagctcttccctctagtttcagtttgagaaaatgttttttggggatcctggaagcaactgacttggttaattcggaagcaatacgtaaggaaatactaagcgatatgaagagagccttctcaacagaaccagagtattgggattggcttgcaagacttgaatataatcctgcaagtagggaagatattagtgaagatgtcacatctcagatagaaaaagcagttcaggtttacgaggaggctatagaagttttacctacaaccataatgctcaaccattatgcgaaatttttgaatggtgttgtcactcttctaaaacttgaaaacaagccttctgggttagctagtccatctgccggttatattcctcttcttttgagggcttacgaaaaggttaaaactatggggtatattgatgaggatcttgcttgtcagcatatttcatttcttctgcaacttggaagactagaggaagcccagaaactggcagaaaatctttgttgtggaatattttcaaattcaatgaagttatggctattaagagtctctgtaggtattagacactttacaagggattccatttcaccgagtaaagctgacctactgtccatctttgaacttcttaaagatgttttgacaagagtgtccatttcagaagctgaggacctgtggttaatggcccttaaattctttgcaaatcaaaaacattactttgacaagttggttgagatttctgttagatcattgacaaaaaatggcggcagtgaacaaggattttccctctctgctgctattgtgcattttgttcttcaaaaggatggagtactgcatgctagagagatgtataaacgcttcattgctttaccacaccctgggcttgcactatatagagcctgcattgaattggaatcaaaccttgcatccattggtgacaaagatagcctcttcaatgccaggaaattatatgaatctgcactgaaagcttatgaccaagatttgagcttatggcgagattactatctgatggagaccaagatgggaacatcagaaacagcttctgccgtacattggcaagcacgcaagattctaaaagacacgactgcacttgttacaccagaattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

726

Amino Acids

83.89

Weight (kDa)

8.92

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28200
fragaria_vesca	FvH4_5g29980 FvH4_5g29980 FvH4_5g29980
malus_domestica	MD08G1079900.v1.1 MD15G1066800.v1.1
prunus_persica	Prupe.4G224400_v2.0.a1
pyrus_communis	pycom08g06600 pycom15g06340
rosa_chinensis	RchiOBHm_Chr7g0223851 RchiOBHm_Chr7g0223951
rosa_laevigata	RLG00000001926
rosa_multiflora	Rmu_sc0002469.1_g000009 Rmu_sc0004540.1_g000012 Rmu_sc0004540.1_g000016
rosa_roxburghii	Rroxscaffold_3G00235230
rosa_rugosa	Rorug07G0220900
rosa_samantha	Rh7AG363500 Rh7AG364100 Rh7BG354600 Rh7BG355500 Rh7CG382100 Rh7CG382900 Rh7DG358100 Rh7DG358600
rosa_wichuraiana	Rw7G030850 Rw7G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1699
Acc16I	TGCGCA	1 cut(s)	763
Acc65I	GGTACC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	585
AccB7I	CCANNNNNTGG	2 cut(s)	1540, 1928
AccI	GTMKAC	2 cut(s)	421, 601
AccII	CGCG	2 cut(s)	282, 295
AciI	CCGC	5 cut(s)	135, 157, 165, 282, 1815
AclWI	GGATC	4 cut(s)	686, 1096, 1109, 1485
AcsI	RAATTY	6 cut(s)	285, 650, 698, 1343, 1573, 1742
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	7 cut(s)	65, 236, 328, 341, 587, 1881, 2121
AfiI	CCNNNNNNNGG	9 cut(s)	20, 27, 68, 153, 367, 1412, 1540, 1928, 2124
AhdI	GACNNNNNGTC	1 cut(s)	1660
AjnI	CCWGG	5 cut(s)	167, 633, 1104, 1927, 2009
AloI	GAACNNNNNNTCC	2 cut(s)	795, 827
Alw21I	GWGCWC	2 cut(s)	264, 576
Alw26I	GTCTC	4 cut(s)	125, 392, 1606, 2078
AlwI	GGATC	4 cut(s)	686, 1096, 1109, 1485
AlwNI	CAGNNNCTG	3 cut(s)	1540, 1715, 2114
Ama87I	CYCGRG	3 cut(s)	20, 272, 667
AoxI	GGCC	3 cut(s)	30, 463, 1734
ApaI	GGGCCC	1 cut(s)	34
ApeKI	GCWGC	5 cut(s)	451, 686, 689, 725, 1844
ApoI	RAATTY	6 cut(s)	285, 650, 698, 1343, 1573, 1742
Asp700I	GAANNNNTTC	2 cut(s)	1062, 1567
Asp718I	GGTACC	1 cut(s)	585
AspLEI	GCGC	3 cut(s)	90, 297, 764
AspS9I	GGNCC	8 cut(s)	30, 31, 171, 463, 631, 664, 1720, 1735
AsuC2I	CCSGG	4 cut(s)	21, 22, 668, 669
AsuHPI	GGTGA	3 cut(s)	647, 1632, 1997
AsuII	TTCGAA	1 cut(s)	187
AvaI	CYCGRG	3 cut(s)	20, 272, 667
AvaII	GGWCC	4 cut(s)	171, 631, 664, 1720
BaeGI	GKGCMC	2 cut(s)	34, 863
BamHI	GGATCC	1 cut(s)	1101
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	4 cut(s)	34, 264, 362, 576
BarI	GAAGNNNNNNTAC	4 cut(s)	1047, 1079, 1892, 1924
BbsI	GAAGAC	2 cut(s)	780, 1525
Bbv12I	GWGCWC	2 cut(s)	264, 576
BbvCI	CCTCAGC	1 cut(s)	1716
BbvI	GCAGC	5 cut(s)	438, 673, 701, 712, 1831
BccI	CCATC	5 cut(s)	1414, 1673, 1868, 2074, 2086
BceAI	ACGGC	2 cut(s)	75, 2102
BciT130I	CCWGG	5 cut(s)	169, 635, 1106, 1929, 2011
BclI	TGATCA	2 cut(s)	177, 874
BcnI	CCSGG	4 cut(s)	21, 22, 668, 669
BcoDI	GTCTC	4 cut(s)	125, 392, 1606, 2078
BfaI	CTAG	4 cut(s)	1071, 1401, 1523, 1890
BfmI	CTRYAG	3 cut(s)	687, 1299, 1605
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	9 cut(s)	135, 158, 165, 452, 687, 690, 726, 1816, 1845
BlsI	GCNGC	9 cut(s)	136, 159, 166, 453, 688, 691, 727, 1817, 1846
BmcAI	AGTACT	1 cut(s)	1881
Bme1390I	CCNGG	9 cut(s)	21, 22, 169, 635, 668, 669, 1106, 1929, 2011
Bme18I	GGWCC	4 cut(s)	171, 631, 664, 1720
BmeRI	GACNNNNNGTC	1 cut(s)	1660
BmeT110I	CYCGRG	3 cut(s)	20, 272, 667
BmgT120I	GGNCC	8 cut(s)	30, 31, 171, 463, 631, 664, 1720, 1735
BmiI	GGNNCC	5 cut(s)	12, 32, 587, 666, 1103
BmrFI	CCNGG	9 cut(s)	21, 22, 169, 635, 668, 669, 1106, 1929, 2011
BmsI	GCATC	3 cut(s)	432, 631, 1985
BpiI	GAAGAC	2 cut(s)	780, 1525
BpmI	CTGGAG	4 cut(s)	68, 114, 193, 1068
Bpu10I	CCTNAGC	1 cut(s)	1716
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	5 cut(s)	263, 332, 350, 452, 611
BpuMI	CCSGG	4 cut(s)	21, 22, 668, 669
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	2 cut(s)	1476, 2073
BsaI	GGTCTC	1 cut(s)	2078
BsaJI	CCNNGG	4 cut(s)	20, 667, 1927, 1928
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	9 cut(s)	20, 27, 68, 153, 367, 1412, 1540, 1928, 2124
Bse118I	RCCGGY	2 cut(s)	342, 1412
Bse1I	ACTGG	3 cut(s)	210, 232, 1545
Bse3DI	GCAATG	2 cut(s)	32, 1911
Bse8I	GATNNNNATC	2 cut(s)	1476, 2073
BseBI	CCWGG	5 cut(s)	169, 635, 1106, 1929, 2011
BseDI	CCNNGG	4 cut(s)	20, 667, 1927, 1928
BseGI	GGATG	3 cut(s)	859, 1879, 1976
BseJI	GATNNNNATC	2 cut(s)	1476, 2073
BseLI	CCNNNNNNNGG	9 cut(s)	20, 27, 68, 153, 367, 1412, 1540, 1928, 2124
BseMI	GCAATG	2 cut(s)	32, 1911
BseMII	CTCAG	4 cut(s)	300, 416, 1277, 1707
BseNI	ACTGG	3 cut(s)	210, 232, 1545
BseRI	GAGGAG	1 cut(s)	1307
BseSI	GKGCMC	2 cut(s)	34, 863
BseXI	GCAGC	5 cut(s)	438, 673, 701, 712, 1831
BseYI	CCCAGC	1 cut(s)	195
BsgI	GTGCAG	2 cut(s)	2013, 2142
Bsh1236I	CGCG	2 cut(s)	282, 295
BshFI	GGCC	3 cut(s)	32, 465, 1736
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	2 cut(s)	264, 576
BsiHKCI	CYCGRG	3 cut(s)	20, 272, 667
BsiSI	CCGG	4 cut(s)	21, 343, 668, 1413
BslFI	GGGAC	3 cut(s)	85, 650, 916
BslI	CCNNNNNNNGG	9 cut(s)	20, 27, 68, 153, 367, 1412, 1540, 1928, 2124
BsmAI	GTCTC	4 cut(s)	125, 392, 1606, 2078
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	85, 650, 916
BsnI	GGCC	3 cut(s)	32, 465, 1736
Bso31I	GGTCTC	1 cut(s)	2078
BsoBI	CYCGRG	3 cut(s)	20, 272, 667
Bsp119I	TTCGAA	1 cut(s)	187
Bsp120I	GGGCCC	1 cut(s)	30
Bsp1286I	GDGCHC	5 cut(s)	34, 264, 362, 576, 863
Bsp143I	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
BspACI	CCGC	5 cut(s)	135, 157, 165, 282, 1815
BspANI	GGCC	3 cut(s)	32, 465, 1736
BspCNI	CTCAG	4 cut(s)	301, 415, 1276, 1708
BspFNI	CGCG	2 cut(s)	282, 295
BspHI	TCATGA	2 cut(s)	516, 549
BspLI	GGNNCC	5 cut(s)	12, 32, 587, 666, 1103
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	4 cut(s)	686, 1096, 1109, 1485
BspQI	GCTCTTC	1 cut(s)	1068
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	585
BspTNI	GGTCTC	1 cut(s)	2078
BsrDI	GCAATG	2 cut(s)	32, 1911
BsrFI	RCCGGY	2 cut(s)	342, 1412
BsrI	ACTGG	3 cut(s)	210, 232, 1545
BssAI	RCCGGY	2 cut(s)	342, 1412
BssECI	CCNNGG	4 cut(s)	20, 667, 1927, 1928
BssMI	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
Bst2UI	CCWGG	5 cut(s)	169, 635, 1106, 1929, 2011
Bst4CI	ACNGT	2 cut(s)	900, 1662
Bst6I	CTCTTC	5 cut(s)	1068, 1160, 1371, 1431, 2006
BstBAI	YACGTR	1 cut(s)	1142
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	8 cut(s)	162, 543, 1206, 1887, 1935, 1951, 2130, 2134
BstDEI	CTNAG	7 cut(s)	309, 402, 425, 1031, 1154, 1263, 1716
BstF5I	GGATG	3 cut(s)	859, 1879, 1976
BstFNI	CGCG	2 cut(s)	282, 295
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	3 cut(s)	90, 297, 764
BstKTI	GATC	7 cut(s)	180, 271, 681, 877, 1104, 1480, 1799
BstMAI	GTCTC	4 cut(s)	125, 392, 1606, 2078
BstMBI	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 451, 457, 731, 1058, 2036
BstNI	CCWGG	5 cut(s)	169, 635, 1106, 1929, 2011
BstNSI	RCATGY	1 cut(s)	1889
BstSCI	CCNGG	9 cut(s)	19, 20, 167, 633, 666, 667, 1104, 1927, 2009
BstSFI	CTRYAG	3 cut(s)	687, 1299, 1605
BstSLI	GKGCMC	2 cut(s)	34, 863
BstSNI	TACGTA	1 cut(s)	1142
BstUI	CGCG	2 cut(s)	282, 295
BstV1I	GCAGC	5 cut(s)	438, 673, 701, 712, 1831
BstV2I	GAAGAC	2 cut(s)	780, 1525
BstX2I	RGATCY	3 cut(s)	678, 1101, 1477
BstXI	CCANNNNNNTGG	1 cut(s)	1194
BstYI	RGATCY	3 cut(s)	678, 1101, 1477
BsuRI	GGCC	3 cut(s)	32, 465, 1736
BtsCI	GGATG	3 cut(s)	859, 1879, 1976
BtsI	GCAGTG	2 cut(s)	99, 1825
BtsIMutI	CAGTG	6 cut(s)	99, 187, 444, 905, 1825, 2030
Cac8I	GCNNGC	8 cut(s)	162, 543, 1206, 1887, 1935, 1951, 2130, 2134
CaiI	CAGNNNCTG	3 cut(s)	1540, 1715, 2114
CciI	TCATGA	2 cut(s)	516, 549
CfoI	GCGC	3 cut(s)	90, 297, 764
Cfr10I	RCCGGY	2 cut(s)	342, 1412
Cfr13I	GGNCC	8 cut(s)	30, 31, 171, 463, 631, 664, 1720, 1735
Cfr9I	CCCGGG	2 cut(s)	20, 667
CseI	GACGC	2 cut(s)	50, 341
Csp6I	GTAC	7 cut(s)	64, 235, 327, 340, 586, 1880, 2120
CviAII	CATG	7 cut(s)	517, 550, 739, 799, 872, 928, 1886
CviQI	GTAC	7 cut(s)	64, 235, 327, 340, 586, 1880, 2120
DdeI	CTNAG	7 cut(s)	309, 402, 425, 1031, 1154, 1263, 1716
DpnI	GATC	7 cut(s)	179, 270, 680, 876, 1103, 1479, 1798
DpnII	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
DrdI	GACNNNNNNGTC	1 cut(s)	1699
DriI	GACNNNNNGTC	1 cut(s)	1660
DseDI	GACNNNNNNGTC	1 cut(s)	1699
Eam1104I	CTCTTC	5 cut(s)	1068, 1160, 1371, 1431, 2006
Eam1105I	GACNNNNNGTC	1 cut(s)	1660
EarI	CTCTTC	5 cut(s)	1068, 1160, 1371, 1431, 2006
Ecl136II	GAGCTC	2 cut(s)	262, 574
Eco105I	TACGTA	1 cut(s)	1142
Eco24I	GRGCYC	4 cut(s)	34, 264, 362, 576
Eco31I	GGTCTC	1 cut(s)	2078
Eco32I	GATATC	1 cut(s)	306
Eco47I	GGWCC	4 cut(s)	171, 631, 664, 1720
Eco53kI	GAGCTC	2 cut(s)	262, 574
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	3 cut(s)	20, 272, 667
EcoICRI	GAGCTC	2 cut(s)	262, 574
EcoO109I	RGGNCCY	5 cut(s)	31, 463, 631, 664, 1720
EcoRII	CCWGG	5 cut(s)	167, 633, 1104, 1927, 2009
EcoRV	GATATC	1 cut(s)	306
EcoT38I	GRGCYC	4 cut(s)	34, 264, 362, 576
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	7 cut(s)	520, 553, 742, 802, 875, 931, 1889
FalI	AAGNNNNNCTT	2 cut(s)	1157, 1189
FaqI	GGGAC	3 cut(s)	85, 650, 916
FatI	CATG	7 cut(s)	516, 549, 738, 798, 871, 927, 1885
FbaI	TGATCA	2 cut(s)	177, 874
FblI	GTMKAC	2 cut(s)	421, 601
Fnu4HI	GCNGC	9 cut(s)	135, 158, 165, 452, 687, 690, 726, 1816, 1845
FokI	GGATG	3 cut(s)	866, 1886, 1963
FriOI	GRGCYC	4 cut(s)	34, 264, 362, 576
Fsp4HI	GCNGC	9 cut(s)	135, 158, 165, 452, 687, 690, 726, 1816, 1845
FspBI	CTAG	4 cut(s)	1071, 1401, 1523, 1890
FspI	TGCGCA	1 cut(s)	763
GlaI	GCGC	3 cut(s)	89, 296, 763
GluI	GCNGC	9 cut(s)	135, 158, 165, 452, 687, 690, 726, 1816, 1845
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	4 cut(s)	68, 114, 193, 1068
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	3 cut(s)	32, 465, 1736
HapII	CCGG	4 cut(s)	21, 343, 668, 1413
HgaI	GACGC	2 cut(s)	50, 341
HhaI	GCGC	3 cut(s)	90, 297, 764
Hin1II	CATG	7 cut(s)	520, 553, 742, 802, 875, 931, 1889
Hin6I	GCGC	3 cut(s)	88, 295, 762
HinP1I	GCGC	3 cut(s)	88, 295, 762
HincII	GTYRAC	2 cut(s)	422, 602
HindII	GTYRAC	2 cut(s)	422, 602
HindIII	AAGCTT	1 cut(s)	2037
HinfI	GANTC	9 cut(s)	228, 400, 410, 513, 1599, 1631, 1964, 2024, 2140
HpaII	CCGG	4 cut(s)	21, 343, 668, 1413
HphI	GGTGA	3 cut(s)	647, 1632, 1997
Hpy166II	GTNNAC	4 cut(s)	422, 602, 1288, 1823
Hpy188III	TCNNGA	8 cut(s)	272, 319, 469, 517, 550, 676, 781, 1010
Hpy8I	GTNNAC	4 cut(s)	422, 602, 1288, 1823
Hpy99I	CGWCG	2 cut(s)	44, 423
HpyAV	CCTTC	7 cut(s)	120, 603, 622, 829, 938, 1183, 1398
HpyCH4III	ACNGT	2 cut(s)	900, 1662
HpyCH4IV	ACGT	1 cut(s)	1141
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 451, 457, 731, 1058, 2036
HpyF3I	CTNAG	7 cut(s)	309, 402, 425, 1031, 1154, 1263, 1716
HpySE526I	ACGT	1 cut(s)	1141
Hsp92II	CATG	7 cut(s)	520, 553, 742, 802, 875, 931, 1889
HspAI	GCGC	3 cut(s)	88, 295, 762
KpnI	GGTACC	1 cut(s)	589
Ksp22I	TGATCA	2 cut(s)	177, 874
Kzo9I	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	3 cut(s)	10, 133, 1049
Lsp1109I	GCAGC	5 cut(s)	438, 673, 701, 712, 1831
LweI	GCATC	3 cut(s)	432, 631, 1985
MaeI	CTAG	4 cut(s)	1071, 1401, 1523, 1890
MaeII	ACGT	1 cut(s)	1141
MaeIII	GTNAC	5 cut(s)	212, 1255, 1360, 1985, 2164
MalI	GATC	7 cut(s)	179, 270, 680, 876, 1103, 1479, 1798
MboI	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
MflI	RGATCY	3 cut(s)	678, 1101, 1477
MhlI	GDGCHC	5 cut(s)	34, 264, 362, 576, 863
MlyI	GAGTC	3 cut(s)	237, 394, 1608
MroXI	GAANNNNTTC	2 cut(s)	1062, 1567
MspI	CCGG	4 cut(s)	21, 343, 668, 1413
MspR9I	CCNGG	9 cut(s)	21, 22, 169, 635, 668, 669, 1106, 1929, 2011
MvaI	CCWGG	5 cut(s)	169, 635, 1106, 1929, 2011
MvnI	CGCG	2 cut(s)	282, 295
MwoI	GCNNNNNNNGC	6 cut(s)	134, 451, 457, 731, 1058, 2036
NciI	CCSGG	4 cut(s)	21, 22, 668, 669
NdeII	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
NlaIII	CATG	7 cut(s)	520, 553, 742, 802, 875, 931, 1889
NlaIV	GGNNCC	5 cut(s)	12, 32, 587, 666, 1103
NmuCI	GTSAC	4 cut(s)	212, 1255, 1360, 1985
NsbI	TGCGCA	1 cut(s)	763
NspI	RCATGY	1 cut(s)	1889
NspV	TTCGAA	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	1889
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	2 cut(s)	516, 549
PasI	CCCWGGG	1 cut(s)	1928
PciSI	GCTCTTC	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	1062, 1567
PfeI	GAWTC	6 cut(s)	410, 513, 1631, 1964, 2024, 2140
PflMI	CCANNNNNTGG	2 cut(s)	1540, 1928
PfoI	TCCNGGA	1 cut(s)	1104
PkrI	GCNGC	9 cut(s)	136, 159, 166, 453, 688, 691, 727, 1817, 1846
PleI	GAGTC	3 cut(s)	236, 394, 1607
PpsI	GAGTC	3 cut(s)	236, 394, 1607
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	3 cut(s)	631, 664, 1720
Psp124BI	GAGCTC	2 cut(s)	264, 576
Psp5II	RGGWCCY	3 cut(s)	631, 664, 1720
Psp6I	CCWGG	5 cut(s)	167, 633, 1104, 1927, 2009
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	5 cut(s)	167, 633, 1104, 1927, 2009
PspN4I	GGNNCC	5 cut(s)	12, 32, 587, 666, 1103
PspOMI	GGGCCC	1 cut(s)	30
PspPI	GGNCC	8 cut(s)	30, 31, 171, 463, 631, 664, 1720, 1735
PspPPI	RGGWCCY	3 cut(s)	631, 664, 1720
PstI	CTGCAG	1 cut(s)	691
PstNI	CAGNNNCTG	3 cut(s)	1540, 1715, 2114
PsuI	RGATCY	3 cut(s)	678, 1101, 1477
RsaI	GTAC	7 cut(s)	65, 236, 328, 341, 587, 1881, 2121
RsaNI	GTAC	7 cut(s)	64, 235, 327, 340, 586, 1880, 2120
SacI	GAGCTC	2 cut(s)	264, 576
SalI	GTCGAC	2 cut(s)	420, 600
SapI	GCTCTTC	1 cut(s)	1068
SatI	GCNGC	9 cut(s)	135, 158, 165, 452, 687, 690, 726, 1816, 1845
Sau3AI	GATC	7 cut(s)	177, 268, 678, 874, 1101, 1477, 1796
Sau96I	GGNCC	8 cut(s)	30, 31, 171, 463, 631, 664, 1720, 1735
ScaI	AGTACT	1 cut(s)	1881
SchI	GAGTC	3 cut(s)	237, 394, 1608
ScrFI	CCNGG	9 cut(s)	21, 22, 169, 635, 668, 669, 1106, 1929, 2011
SduI	GDGCHC	5 cut(s)	34, 264, 362, 576, 863
SfaNI	GCATC	3 cut(s)	432, 631, 1985
SfcI	CTRYAG	3 cut(s)	687, 1299, 1605
Sfr274I	CTCGAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	4 cut(s)	171, 631, 664, 1720
SlaI	CTCGAG	1 cut(s)	272
SmaI	CCCGGG	2 cut(s)	22, 669
SmlI	CTYRAG	6 cut(s)	242, 272, 347, 365, 467, 590
SmoI	CTYRAG	6 cut(s)	242, 272, 347, 365, 467, 590
SnaBI	TACGTA	1 cut(s)	1142
SphI	GCATGC	1 cut(s)	1889
SsiI	CCGC	5 cut(s)	135, 157, 165, 282, 1815
SspI	AATATT	1 cut(s)	1566
SspMI	CTAG	4 cut(s)	1071, 1401, 1523, 1890
SstI	GAGCTC	2 cut(s)	264, 576
StyD4I	CCNGG	9 cut(s)	19, 20, 167, 633, 666, 667, 1104, 1927, 2009
TaaI	ACNGT	2 cut(s)	900, 1662
TaiI	ACGT	1 cut(s)	1144
TaqI	TCGA	5 cut(s)	39, 187, 273, 421, 601
TatI	WGTACW	1 cut(s)	1879
TauI	GCSGC	4 cut(s)	137, 160, 167, 1818
TfiI	GAWTC	6 cut(s)	410, 513, 1631, 1964, 2024, 2140
TscAI	CASTG	6 cut(s)	106, 187, 444, 905, 1825, 2037
TseFI	GTSAC	4 cut(s)	212, 1255, 1360, 1985
TseI	GCWGC	5 cut(s)	451, 686, 689, 725, 1844
Tsp45I	GTSAC	4 cut(s)	212, 1255, 1360, 1985
TspGWI	ACGGA	4 cut(s)	51, 107, 136, 407
TspMI	CCCGGG	2 cut(s)	20, 667
TspRI	CASTG	6 cut(s)	106, 187, 444, 905, 1825, 2037
Van91I	CCANNNNNTGG	2 cut(s)	1540, 1928
VpaK11BI	GGWCC	4 cut(s)	171, 631, 664, 1720
XapI	RAATTY	6 cut(s)	285, 650, 698, 1343, 1573, 1742
XceI	RCATGY	1 cut(s)	1889
XhoI	CTCGAG	1 cut(s)	272
XmaI	CCCGGG	2 cut(s)	20, 667
XmiI	GTMKAC	2 cut(s)	421, 601
XmnI	GAANNNNTTC	2 cut(s)	1062, 1567
XspI	CTAG	4 cut(s)	1071, 1401, 1523, 1890
ZrmI	AGTACT	1 cut(s)	1881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.