Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007848

Physical Location & Seq

Genomic Coordinates Reverse (-)

7764574 .. 7766008

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1093400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAGCCTTCGAATGTGCCTATGTCCAGACGATCTTCATTCTGCCCGAAAGCAAAGGAAAAGACCATTCTAGTGAAATCTGTAACGCAGCAGCCAAGCACCGGTTTTAGTAATGCATGCAGCTTTCTCTCCATTTCCATCTCACTTCTTGTAAAGAGAACGTATGTGAGCCCTGTTTCTGCACTCTTCCTTTTCGATGATTCTTGCACCCAGCCAAAGTCAGCTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.4

Weight (kDa)

9.51

Isoelectric Point (pI)

82.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49180
fragaria_vesca	FvH4_2g34270 FvH4_2g34270
malus_domestica	MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1
prunus_persica	Prupe.1G433800_v2.0.a1
pyrus_communis	pycom08g07920 pycom15g07550
rosa_chinensis	RchiOBHm_Chr6g0308111
rosa_laevigata	RLG00000010666
rosa_multiflora	Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160530
rosa_rugosa	Rorug06G0364100 Rorug06G0364200
rosa_samantha	Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200
rosa_wichuraiana	Rw6G041260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgeI	ACCGGT	1 cut(s)	101
AluBI	AGCT	2 cut(s)	123, 224
AluI	AGCT	2 cut(s)	123, 224
ApeKI	GCWGC	3 cut(s)	88, 91, 120
AsiGI	ACCGGT	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	100, 103, 132
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	3 cut(s)	89, 92, 121
BlsI	GCNGC	3 cut(s)	90, 93, 122
BmiI	GGNNCC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	100, 103, 132
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	165
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	100, 103, 132
Cac8I	GCNNGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	101
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	7, 94, 123, 171, 214, 224
CviKI_1	RGCY	6 cut(s)	7, 94, 123, 171, 214, 224
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	1 cut(s)	120
FaiI	YATR	3 cut(s)	23, 118, 165
FatI	CATG	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	89, 92, 121
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	89, 92, 121
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	89, 92, 121
GsaI	CCCAGC	1 cut(s)	214
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	1 cut(s)	120
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	116, 120, 182, 207
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	4, 229
LpnPI	CCDG	4 cut(s)	40, 115, 186, 224
Lsp1109I	GCAGC	3 cut(s)	100, 103, 132
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	27, 178
MhlI	GDGCHC	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	118
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	200
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	90, 93, 122
PspFI	CCCAGC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	3 cut(s)	89, 92, 121
Sau3AI	GATC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	3 cut(s)	125, 164, 226
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	71
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	11, 195
TfiI	GAWTC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	88, 91, 120
TspDTI	ATGAA	1 cut(s)	27
XceI	RCATGY	1 cut(s)	120
XspI	CTAG	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.