Rmu_sc0024733.1_g000005

Protein ROOT INITIATION DEFECTIVE 3

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024733.1
Physical Location & Seq
Forward (+)
9593 .. 12912
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024733.1_g000005.1.cds

Sequence Viewer

Length: 1335 bp
atggaggtggaggtggtggtggcctcctcttccgtcgaagcagacatcgcctgctgggacttcaacaccggcgccgagctcctccggtacaagtcctgcgcctctcccaatcacggcctcgtctccgtcggcgaccgattcctcgcctcctcccagctccgtcagaccaatggctctgtcaagtactgggcctggtctaaacctcaacctgatgccaggagctcgcaagacgaaccgatcaggccgcttgctgctaacagagagggcacctatgttgctggtggaggtctctctgggactatctacttgtgggaggttactagcggtaggctgcttaagaagtgggatgctcattatagagctgtgagttgcttgaaattttcagatgatggcaccatactgttttcggggtctgaggatggagaaattagagtctggaaccttgtaacggtattcgatgatcatcaaactcaacatgaaaagcatcggtacttgcttagttttaccgagcattcgctttctgtaacggatatggtgttaggatttggatatgatcccattattgtgtcggcttcagaggatcgaacgtgcaagatttggagcttttctagagaaacattattgagaaatattgtctttcccacaataattgatgcaattgcaatggatcccggtgaaaatctcctctttgctggtggtagagatggaaatatatatgtggccgcacttaatactgcaaggacagctagcagcaaatatggaatgcatatcctcaatcgcttctcaaatcacagcaaggcagttacttgcttggcgtggggactatctggaaactatttgatttctggatcagaggatggcgtggttcgagtatgggatgctaaaactgctaacattgtccgtgtgctcaaacatgcaaaaggtccagtgaataatattctagttattagacagcaagtttctcagatgatcccaaattcacaagcctcctctaggaggcatggttcctcattaccacctccactagaaaagcgtatatatgaagcagataaagatgcaggttttaaggcggtcatcggtctccaggatacttgcagtaaatctacagatgcagtgtttgtcacttccgacatgatggagcgtcaaatcagagagcttcagcaacaaggttctgcttcagctgaaatggagattgagagactaaagcttgagaataaaaaatgcatacaaatggttcagcagtggaagaaaatgtatgacaatttgcaccagttctgtgtaaatgagcttgtcgatggtgataaaggaggagccccaaatggaaatgccccctga

Protein Analysis

444

Amino Acids

49.19

Weight (kDa)

6.43

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1049
AccB1I GGYRCC 3 cut(s) 71, 266, 392
AciI CCGC 4 cut(s) 245, 324, 723, 1070
AclWI GGATC 6 cut(s) 548, 588, 662, 675, 856, 964
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 2 cut(s) 377, 976
AcuI CTGAAG 3 cut(s) 558, 1142, 1161
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 89, 185, 491
AfiI CCNNNNNNNGG 4 cut(s) 113, 448, 993, 996
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 64, 376
AjnI CCWGG 3 cut(s) 191, 215, 1083
AloI GAACNNNNNNTCC 2 cut(s) 988, 1020
Alw21I GWGCWC 3 cut(s) 81, 224, 909
Alw26I GTCTC 4 cut(s) 127, 293, 1085, 1192
AlwI GGATC 6 cut(s) 548, 588, 662, 675, 856, 964
AoxI GGCC 5 cut(s) 21, 115, 189, 242, 720
ApeKI GCWGC 3 cut(s) 251, 331, 750
ApoI RAATTY 2 cut(s) 377, 976
AspLEI GCGC 2 cut(s) 74, 101
AspS9I GGNCC 2 cut(s) 189, 923
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 2 cut(s) 686, 1310
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 923
BaeGI GKGCMC 1 cut(s) 269
BamHI GGATCC 1 cut(s) 667
BanI GGYRCC 3 cut(s) 71, 266, 392
BanII GRGCYC 3 cut(s) 81, 224, 1315
Bbv12I GWGCWC 3 cut(s) 81, 224, 909
BbvI GCAGC 3 cut(s) 238, 318, 762
BccI CCATC 6 cut(s) 383, 413, 698, 851, 1129, 1289
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 3 cut(s) 193, 217, 1085
BciVI GTATCC 1 cut(s) 1081
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 4 cut(s) 127, 293, 1085, 1192
BfaI CTAG 6 cut(s) 321, 609, 747, 941, 993, 1025
BfmI CTRYAG 1 cut(s) 1104
BfoI RGCGCY 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 1049
BfuI GTATCC 1 cut(s) 1081
BisI GCNGC 5 cut(s) 245, 252, 332, 723, 751
BlsI GCNGC 5 cut(s) 246, 253, 333, 724, 752
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 4 cut(s) 193, 217, 672, 1085
Bme18I GGWCC 1 cut(s) 923
BmgT120I GGNCC 2 cut(s) 189, 923
BmiI GGNNCC 7 cut(s) 73, 268, 394, 440, 669, 1006, 1312
BmrFI CCNGG 4 cut(s) 193, 217, 672, 1085
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 7 cut(s) 202, 337, 493, 643, 868, 1045, 1099
BmtI GCTAGC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 1067
BpuEI CTTGAG 1 cut(s) 1229
BpuMI CCSGG 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 293, 1085
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 448, 993, 996
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 191, 926, 1270
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 3 cut(s) 193, 217, 1085
BseGI GGATG 4 cut(s) 352, 424, 862, 883
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 4 cut(s) 113, 448, 993, 996
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 2 cut(s) 405, 977
BseNI ACTGG 3 cut(s) 191, 926, 1270
BseRI GAGGAG 6 cut(s) 16, 71, 139, 674, 979, 1323
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 3 cut(s) 238, 318, 762
BseYI CCCAGC 2 cut(s) 54, 153
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 5 cut(s) 23, 117, 191, 244, 722
BshNI GGYRCC 3 cut(s) 71, 266, 392
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 3 cut(s) 81, 224, 909
BsiSI CCGG 3 cut(s) 69, 85, 672
BslFI GGGAC 3 cut(s) 71, 310, 834
BslI CCNNNNNNNGG 4 cut(s) 113, 448, 993, 996
BsmAI GTCTC 4 cut(s) 127, 293, 1085, 1192
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 3 cut(s) 71, 310, 834
BsmI GAATGC 2 cut(s) 511, 768
BsnI GGCC 5 cut(s) 23, 117, 191, 244, 722
Bso31I GGTCTC 2 cut(s) 293, 1085
Bsp1286I GDGCHC 5 cut(s) 81, 224, 269, 909, 1315
Bsp143I GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
BspACI CCGC 4 cut(s) 245, 324, 723, 1070
BspANI GGCC 5 cut(s) 23, 117, 191, 244, 722
BspCNI CTCAG 2 cut(s) 406, 976
BspLI GGNNCC 7 cut(s) 73, 268, 394, 440, 669, 1006, 1312
BspMI ACCTGC 1 cut(s) 1049
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 6 cut(s) 548, 588, 662, 675, 856, 964
BspT107I GGYRCC 3 cut(s) 71, 266, 392
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 2 cut(s) 293, 1085
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 3 cut(s) 191, 926, 1270
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 3 cut(s) 193, 217, 1085
Bst4CI ACNGT 2 cut(s) 402, 451
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 52, 224, 249, 748
BstDEI CTNAG 3 cut(s) 414, 497, 963
BstENI CCTNNNNNAGG 2 cut(s) 991, 994
BstF5I GGATG 4 cut(s) 352, 424, 862, 883
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 101
BstKTI GATC 7 cut(s) 240, 463, 556, 583, 670, 851, 972
BstMAI GTCTC 4 cut(s) 127, 293, 1085, 1192
BstMBI GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 47, 743, 887
BstNI CCWGG 3 cut(s) 193, 217, 1085
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 4 cut(s) 191, 215, 670, 1083
BstSFI CTRYAG 1 cut(s) 1104
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 238, 318, 762
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuI GTATCC 1 cut(s) 1081
BsuRI GGCC 5 cut(s) 23, 117, 191, 244, 722
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 4 cut(s) 352, 424, 862, 883
BtsI GCAGTG 2 cut(s) 1119, 1247
BtsIMutI CAGTG 3 cut(s) 933, 1119, 1247
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 4 cut(s) 52, 224, 249, 748
CfoI GCGC 2 cut(s) 74, 101
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 189, 923
CseI GACGC 1 cut(s) 1130
Csp6I GTAC 3 cut(s) 88, 184, 490
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 4 cut(s) 476, 914, 1001, 1132
CviQI GTAC 3 cut(s) 88, 184, 490
DdeI CTNAG 3 cut(s) 414, 497, 963
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 239, 462, 555, 582, 669, 850, 971
DpnII GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Ecl136II GAGCTC 2 cut(s) 79, 222
Eco24I GRGCYC 3 cut(s) 81, 224, 1315
Eco31I GGTCTC 2 cut(s) 293, 1085
Eco47I GGWCC 1 cut(s) 923
Eco53kI GAGCTC 2 cut(s) 79, 222
Eco57I CTGAAG 3 cut(s) 558, 1142, 1161
EcoICRI GAGCTC 2 cut(s) 79, 222
EcoNI CCTNNNNNAGG 2 cut(s) 991, 994
EcoRII CCWGG 3 cut(s) 191, 215, 1083
EcoT22I ATGCAT 2 cut(s) 768, 1226
EcoT38I GRGCYC 3 cut(s) 81, 224, 1315
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 4 cut(s) 479, 917, 1004, 1135
FaqI GGGAC 3 cut(s) 71, 310, 834
FatI CATG 4 cut(s) 475, 913, 1000, 1131
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 5 cut(s) 245, 252, 332, 723, 751
FokI GGATG 4 cut(s) 359, 431, 869, 890
FriOI GRGCYC 3 cut(s) 81, 224, 1315
Fsp4HI GCNGC 5 cut(s) 245, 252, 332, 723, 751
FspBI CTAG 6 cut(s) 321, 609, 747, 941, 993, 1025
GlaI GCGC 2 cut(s) 73, 100
GluI GCNGC 5 cut(s) 245, 252, 332, 723, 751
GsaI CCCAGC 2 cut(s) 58, 157
GsuI CTGGAG 1 cut(s) 1067
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 5 cut(s) 23, 117, 191, 244, 722
HapII CCGG 3 cut(s) 69, 85, 672
HgaI GACGC 1 cut(s) 1130
HhaI GCGC 2 cut(s) 74, 101
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 4 cut(s) 479, 917, 1004, 1135
Hin6I GCGC 2 cut(s) 72, 99
HinP1I GCGC 2 cut(s) 72, 99
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 2 cut(s) 138, 432
HpaII CCGG 3 cut(s) 69, 85, 672
HphI GGTGA 2 cut(s) 686, 1310
Hpy188I TCNGA 8 cut(s) 165, 385, 415, 577, 853, 966, 1129, 1151
Hpy188III TCNNGA 4 cut(s) 436, 609, 828, 846
Hpy99I CGWCG 2 cut(s) 38, 131
HpyCH4III ACNGT 2 cut(s) 402, 451
HpyCH4IV ACGT 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 743, 887
HpyF3I CTNAG 3 cut(s) 414, 497, 963
HpySE526I ACGT 1 cut(s) 587
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 4 cut(s) 479, 917, 1004, 1135
HspAI GCGC 2 cut(s) 72, 99
KasI GGCGCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
LmnI GCTCC 6 cut(s) 84, 162, 219, 600, 1138, 1310
Lsp1109I GCAGC 3 cut(s) 238, 318, 762
LweI GCATC 7 cut(s) 202, 337, 493, 643, 868, 1045, 1099
MaeI CTAG 6 cut(s) 321, 609, 747, 941, 993, 1025
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 5 cut(s) 316, 445, 523, 802, 1120
MalI GATC 7 cut(s) 239, 462, 555, 582, 669, 850, 971
MboI GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
MboII GAAGA 2 cut(s) 21, 1258
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 5 cut(s) 81, 224, 269, 909, 1315
MluCI AATT 6 cut(s) 377, 426, 648, 657, 976, 1261
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 441
MmeI TCCRAC 1 cut(s) 1152
Mph1103I ATGCAT 2 cut(s) 768, 1226
MseI TTAA 3 cut(s) 336, 729, 1065
MslI CAYNNNNRTG 2 cut(s) 563, 1229
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 3 cut(s) 69, 85, 672
MspR9I CCNGG 4 cut(s) 193, 217, 672, 1085
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 2 cut(s) 511, 768
MvaI CCWGG 3 cut(s) 193, 217, 1085
MwoI GCNNNNNNNGC 3 cut(s) 47, 743, 887
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 672
NdeII GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 4 cut(s) 479, 917, 1004, 1135
NlaIV GGNNCC 7 cut(s) 73, 268, 394, 440, 669, 1006, 1312
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 1120
NsiI ATGCAT 2 cut(s) 768, 1226
NspI RCATGY 1 cut(s) 917
PctI GAATGC 2 cut(s) 511, 768
PfeI GAWTC 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 1083
PkrI GCNGC 5 cut(s) 246, 253, 333, 724, 752
PleI GAGTC 1 cut(s) 440
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 440
Psp124BI GAGCTC 2 cut(s) 81, 224
Psp6I CCWGG 3 cut(s) 191, 215, 1083
PspFI CCCAGC 2 cut(s) 54, 153
PspGI CCWGG 3 cut(s) 191, 215, 1083
PspN4I GGNNCC 7 cut(s) 73, 268, 394, 440, 669, 1006, 1312
PspPI GGNCC 2 cut(s) 189, 923
PsuI RGATCY 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 3 cut(s) 89, 185, 491
RsaNI GTAC 3 cut(s) 88, 184, 490
RseI CAYNNNNRTG 2 cut(s) 563, 1229
SacI GAGCTC 2 cut(s) 81, 224
SaqAI TTAA 3 cut(s) 336, 729, 1065
SatI GCNGC 5 cut(s) 245, 252, 332, 723, 751
Sau3AI GATC 7 cut(s) 237, 460, 553, 580, 667, 848, 969
Sau96I GGNCC 2 cut(s) 189, 923
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 441
ScrFI CCNGG 4 cut(s) 193, 217, 672, 1085
SduI GDGCHC 5 cut(s) 81, 224, 269, 909, 1315
SfaNI GCATC 7 cut(s) 202, 337, 493, 643, 868, 1045, 1099
SfcI CTRYAG 1 cut(s) 1104
SfoI GGCGCC 1 cut(s) 73
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 2 cut(s) 563, 1229
SmlI CTYRAG 2 cut(s) 335, 1208
SmoI CTYRAG 2 cut(s) 335, 1208
Sse9I AATT 6 cut(s) 377, 426, 648, 657, 976, 1261
SsiI CCGC 4 cut(s) 245, 324, 723, 1070
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 2 cut(s) 631, 937
SspMI CTAG 6 cut(s) 321, 609, 747, 941, 993, 1025
SstI GAGCTC 2 cut(s) 81, 224
StyD4I CCNGG 4 cut(s) 191, 215, 670, 1083
TaaI ACNGT 2 cut(s) 402, 451
TaiI ACGT 1 cut(s) 590
TaqI TCGA 5 cut(s) 36, 456, 583, 868, 1293
TaqII GACCGA 2 cut(s) 150, 1067
TasI AATT 6 cut(s) 377, 426, 648, 657, 976, 1261
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 247, 725
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 3 cut(s) 336, 729, 1065
Tru9I TTAA 3 cut(s) 336, 729, 1065
TscAI CASTG 3 cut(s) 933, 1119, 1247
TseFI GTSAC 1 cut(s) 1120
TseI GCWGC 3 cut(s) 251, 331, 750
Tsp45I GTSAC 1 cut(s) 1120
TspDTI ATGAA 2 cut(s) 492, 1056
TspGWI ACGGA 5 cut(s) 22, 115, 149, 542, 890
TspRI CASTG 3 cut(s) 933, 1119, 1247
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 923
XagI CCTNNNNNAGG 2 cut(s) 991, 994
XapI RAATTY 2 cut(s) 377, 976
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 1 cut(s) 917
XspI CTAG 6 cut(s) 321, 609, 747, 941, 993, 1025
ZrmI AGTACT 1 cut(s) 185
Zsp2I ATGCAT 2 cut(s) 768, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.