Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007848

Physical Location & Seq

Genomic Coordinates Reverse (-)

6389931 .. 6391062

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTTCCATATCATCGATTGTTTCTCGAATCACAGGTCCAGTGAATAATATTCTAGTCGTTCGACAACATTTTTTTGAGAAATATATTGAAGACCTCAAACAAGTCTGGAGCTCTTTGCAATATACTACACACACACACACACACACACACACACACACAATTAATGTGCCTATGTCTAGACTATCTTCATTCTGCCCGAAAGCAAAGGAAAAGACGATTCCGATGAAATCTGTAATGCAGCAGCCAATCACCAGTTCTAGTAATGCATGCAGCTTTGTCTCCCTTTCCATCTCACTTCCTTTCCTGCGTCCATTAGCAGCACTGGCAACAGTCATGCAATTTGTGACCATAAACTGTAATTTCCGGTTTAAAGTTGCTTATAGTCTCAAATCCAGAGATTTTAAAAATAAAATAAAACTAGAGCATTGTAAATCACGATATTGGGAGAGGAGGAATCGACCTGGGGACCTGGAATATGATCTTTTTACCCTTGCAACATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

9.89

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49180
fragaria_vesca	FvH4_2g34270 FvH4_2g34270
malus_domestica	MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1
prunus_persica	Prupe.1G433800_v2.0.a1
pyrus_communis	pycom08g07920 pycom15g07550
rosa_chinensis	RchiOBHm_Chr6g0308111
rosa_laevigata	RLG00000010666
rosa_multiflora	Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160530
rosa_rugosa	Rorug06G0364100 Rorug06G0364200
rosa_samantha	Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200
rosa_wichuraiana	Rw6G041260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	505
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	463, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	2 cut(s)	114, 276
AluI	AGCT	2 cut(s)	114, 276
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	286, 392
ApeKI	GCWGC	4 cut(s)	241, 244, 273, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AseI	ATTAAT	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	38, 469
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	38, 469
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	253, 256, 285, 332
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	2 cut(s)	465, 473
BcoDI	GTCTC	2 cut(s)	286, 392
BfaI	CTAG	4 cut(s)	56, 180, 261, 422
BisI	GCNGC	4 cut(s)	242, 245, 274, 321
BlsI	GCNGC	4 cut(s)	243, 246, 275, 322
Bme1390I	CCNGG	2 cut(s)	465, 473
Bme18I	GGWCC	2 cut(s)	38, 469
BmgT120I	GGNCC	2 cut(s)	38, 469
BmiI	GGNNCC	2 cut(s)	7, 470
BmrFI	CCNGG	2 cut(s)	465, 473
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	366
Bse1I	ACTGG	3 cut(s)	41, 255, 330
BseBI	CCWGG	2 cut(s)	465, 473
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	464
BseNI	ACTGG	3 cut(s)	41, 255, 330
BseRI	GAGGAG	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	253, 256, 285, 332
BshVI	ATCGAT	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	286, 392
BsmFI	GGGAC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	7, 470
BsrI	ACTGG	3 cut(s)	41, 255, 330
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	465, 473
Bst4CI	ACNGT	2 cut(s)	334, 359
BstC8I	GCNNGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	2 cut(s)	286, 392
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	2 cut(s)	465, 473
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	463, 471
BstV1I	GCAGC	4 cut(s)	253, 256, 285, 332
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	48, 323
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	38, 469
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	299
CviAII	CATG	2 cut(s)	270, 337
CviJI	RGCY	3 cut(s)	114, 247, 276
CviKI_1	RGCY	3 cut(s)	114, 247, 276
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
DraI	TTTAAA	2 cut(s)	373, 406
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	38, 469
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	463, 471
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	2 cut(s)	273, 340
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	2 cut(s)	269, 336
Fnu4HI	GCNGC	4 cut(s)	242, 245, 274, 321
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	4 cut(s)	242, 245, 274, 321
FspBI	CTAG	4 cut(s)	56, 180, 261, 422
GluI	GCNGC	4 cut(s)	242, 245, 274, 321
GsuI	CTGGAG	1 cut(s)	130
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	273, 340
HinfI	GANTC	3 cut(s)	30, 220, 457
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	5 cut(s)	27, 109, 180, 396, 438
HpyCH4III	ACNGT	2 cut(s)	334, 359
HpyCH4V	TGCA	6 cut(s)	121, 241, 269, 273, 340, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	273, 340
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	4 cut(s)	253, 256, 285, 332
MaeI	CTAG	4 cut(s)	56, 180, 261, 422
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	2 cut(s)	104, 180
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	162, 341, 361
MnlI	CCTC	3 cut(s)	107, 444, 447
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	3 cut(s)	165, 372, 405
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	465, 473
MvaI	CCWGG	2 cut(s)	465, 473
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	2 cut(s)	273, 340
NlaIV	GGNNCC	2 cut(s)	7, 470
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	30, 220, 457
PkrI	GCNGC	4 cut(s)	243, 246, 275, 322
PpuMI	RGGWCCY	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	2 cut(s)	463, 471
PspGI	CCWGG	2 cut(s)	463, 471
PspN4I	GGNNCC	2 cut(s)	7, 470
PspPI	GGNCC	2 cut(s)	38, 469
PspPPI	RGGWCCY	1 cut(s)	469
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	165, 372, 405
SatI	GCNGC	4 cut(s)	242, 245, 274, 321
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	2 cut(s)	38, 469
ScrFI	CCNGG	2 cut(s)	465, 473
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	40, 99, 116, 278, 466, 474
SinI	GGWCC	2 cut(s)	38, 469
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	162, 341, 361
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	4 cut(s)	56, 180, 261, 422
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	463, 471
TaaI	ACNGT	2 cut(s)	334, 359
TaqI	TCGA	4 cut(s)	17, 28, 64, 460
TasI	AATT	3 cut(s)	162, 341, 361
TfiI	GAWTC	3 cut(s)	30, 220, 457
Tru1I	TTAA	3 cut(s)	165, 372, 405
Tru9I	TTAA	3 cut(s)	165, 372, 405
TscAI	CASTG	2 cut(s)	48, 330
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	4 cut(s)	241, 244, 273, 320
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	180, 242
TspRI	CASTG	2 cut(s)	48, 330
VpaK11BI	GGWCC	2 cut(s)	38, 469
VspI	ATTAAT	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	273
XspI	CTAG	4 cut(s)	56, 180, 261, 422
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.