Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379493.1

Orthogroup ID

OG0007848

Physical Location & Seq

Genomic Coordinates Forward (+)

82 .. 1021

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggaggtggaggtggtggtggcctcctcttccgtcgaagcagacatcgcctgctgggacttcaacaccggcgccgagctcctccggtacaagtcctgcgcctctcccaatcacggcctcgtctccgtcggcgaccgattcctcgcctcctcccagctccgtcagaccaatggctctgtcaagtactgggcctggtctaaacctcaacctgatgccaggagctcgcaagacgaaccgatcaggccgcttgctgctaacagagagggcacctatgttgctggtggaggtctctctgggactatctacttgtgggaggttactagcggtaggctgcttaagaagtgggatgctcattatagagctgtgagttgcttgaaattttcagatgatggcaccatactgttttcggggtctgaggatggagaaattagagtctggaaccttgtaacggtattcgatgatcatcaaactcaacatgaaaagcatcggtacttgcttagttttaccgagcattcgctttctgtaacggatatggtgttaggatttggatatgatcccattattgtgtcggcttcagaggatcgaacgtgcaaggtactacatgcttgttttggacctattgtggtactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

210

Amino Acids

23.25

Weight (kDa)

5.45

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49180
fragaria_vesca	FvH4_2g34270 FvH4_2g34270
malus_domestica	MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1
prunus_persica	Prupe.1G433800_v2.0.a1
pyrus_communis	pycom08g07920 pycom15g07550
rosa_chinensis	RchiOBHm_Chr6g0308111
rosa_laevigata	RLG00000010666
rosa_multiflora	Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160530
rosa_rugosa	Rorug06G0364100 Rorug06G0364200
rosa_samantha	Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200
rosa_wichuraiana	Rw6G041260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	71, 266, 392
AciI	CCGC	2 cut(s)	245, 324
AclWI	GGATC	2 cut(s)	548, 588
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	5 cut(s)	89, 185, 491, 597, 627
AfiI	CCNNNNNNNGG	2 cut(s)	113, 448
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	64, 376
AjnI	CCWGG	2 cut(s)	191, 215
AluBI	AGCT	4 cut(s)	79, 157, 222, 362
AluI	AGCT	4 cut(s)	79, 157, 222, 362
Alw21I	GWGCWC	2 cut(s)	81, 224
Alw26I	GTCTC	2 cut(s)	127, 293
AlwI	GGATC	2 cut(s)	548, 588
AoxI	GGCC	4 cut(s)	21, 115, 189, 242
ApeKI	GCWGC	2 cut(s)	251, 331
ApoI	RAATTY	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	74, 101
AspS9I	GGNCC	2 cut(s)	189, 614
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	3 cut(s)	71, 266, 392
BanII	GRGCYC	2 cut(s)	81, 224
Bbv12I	GWGCWC	2 cut(s)	81, 224
BbvI	GCAGC	2 cut(s)	238, 318
BccI	CCATC	2 cut(s)	383, 413
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	193, 217
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	127, 293
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	3 cut(s)	245, 252, 332
BlsI	GCNGC	3 cut(s)	246, 253, 333
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	193, 217
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	189, 614
BmiI	GGNNCC	4 cut(s)	73, 268, 394, 440
BmrFI	CCNGG	2 cut(s)	193, 217
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	202, 337, 493
BmuI	ACTGGG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 448
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	193, 217
BseGI	GGATG	2 cut(s)	352, 424
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	113, 448
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	3 cut(s)	16, 71, 139
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	238, 318
BseYI	CCCAGC	2 cut(s)	54, 153
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	23, 117, 191, 244
BshNI	GGYRCC	3 cut(s)	71, 266, 392
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	81, 224
BsiSI	CCGG	2 cut(s)	69, 85
BslFI	GGGAC	2 cut(s)	71, 310
BslI	CCNNNNNNNGG	2 cut(s)	113, 448
BsmAI	GTCTC	2 cut(s)	127, 293
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	71, 310
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	4 cut(s)	23, 117, 191, 244
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	3 cut(s)	81, 224, 269
Bsp143I	GATC	4 cut(s)	237, 460, 553, 580
BspACI	CCGC	2 cut(s)	245, 324
BspANI	GGCC	4 cut(s)	23, 117, 191, 244
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	73, 268, 394, 440
BspPI	GGATC	2 cut(s)	548, 588
BspT107I	GGYRCC	3 cut(s)	71, 266, 392
BspTI	CTTAAG	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	4 cut(s)	237, 460, 553, 580
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	193, 217
Bst4CI	ACNGT	2 cut(s)	402, 451
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	52, 224, 249
BstDEI	CTNAG	2 cut(s)	414, 497
BstF5I	GGATG	2 cut(s)	352, 424
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 101
BstKTI	GATC	4 cut(s)	240, 463, 556, 583
BstMAI	GTCTC	2 cut(s)	127, 293
BstMBI	GATC	4 cut(s)	237, 460, 553, 580
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	193, 217
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	191, 215
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	238, 318
BsuRI	GGCC	4 cut(s)	23, 117, 191, 244
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	352, 424
Cac8I	GCNNGC	3 cut(s)	52, 224, 249
CfoI	GCGC	2 cut(s)	74, 101
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	189, 614
Csp6I	GTAC	5 cut(s)	88, 184, 490, 596, 626
CviAII	CATG	2 cut(s)	476, 602
CviQI	GTAC	5 cut(s)	88, 184, 490, 596, 626
DdeI	CTNAG	2 cut(s)	414, 497
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	4 cut(s)	239, 462, 555, 582
DpnII	GATC	4 cut(s)	237, 460, 553, 580
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Ecl136II	GAGCTC	2 cut(s)	79, 222
Eco24I	GRGCYC	2 cut(s)	81, 224
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	2 cut(s)	79, 222
Eco57I	CTGAAG	1 cut(s)	558
EcoICRI	GAGCTC	2 cut(s)	79, 222
EcoRII	CCWGG	2 cut(s)	191, 215
EcoT38I	GRGCYC	2 cut(s)	81, 224
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	479, 605
FaiI	YATR	8 cut(s)	273, 357, 398, 477, 533, 552, 603, 631
FaqI	GGGAC	2 cut(s)	71, 310
FatI	CATG	2 cut(s)	475, 601
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	245, 252, 332
FokI	GGATG	2 cut(s)	359, 431
FriOI	GRGCYC	2 cut(s)	81, 224
Fsp4HI	GCNGC	3 cut(s)	245, 252, 332
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	2 cut(s)	73, 100
GluI	GCNGC	3 cut(s)	245, 252, 332
GsaI	CCCAGC	2 cut(s)	58, 157
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	23, 117, 191, 244
HapII	CCGG	2 cut(s)	69, 85
HhaI	GCGC	2 cut(s)	74, 101
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	479, 605
Hin6I	GCGC	2 cut(s)	72, 99
HinP1I	GCGC	2 cut(s)	72, 99
HinfI	GANTC	2 cut(s)	138, 432
HpaII	CCGG	2 cut(s)	69, 85
Hpy188I	TCNGA	4 cut(s)	165, 385, 415, 577
Hpy188III	TCNNGA	1 cut(s)	436
Hpy99I	CGWCG	2 cut(s)	38, 131
HpyCH4III	ACNGT	2 cut(s)	402, 451
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	414, 497
HpySE526I	ACGT	1 cut(s)	587
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	479, 605
HspAI	GCGC	2 cut(s)	72, 99
KasI	GGCGCC	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	237, 460, 553, 580
LmnI	GCTCC	3 cut(s)	84, 162, 219
Lsp1109I	GCAGC	2 cut(s)	238, 318
LweI	GCATC	3 cut(s)	202, 337, 493
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	3 cut(s)	316, 445, 523
MalI	GATC	4 cut(s)	239, 462, 555, 582
MboI	GATC	4 cut(s)	237, 460, 553, 580
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	3 cut(s)	81, 224, 269
MluCI	AATT	2 cut(s)	377, 426
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	2 cut(s)	69, 85
MspR9I	CCNGG	2 cut(s)	193, 217
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	2 cut(s)	193, 217
MwoI	GCNNNNNNNGC	1 cut(s)	47
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	4 cut(s)	237, 460, 553, 580
NlaIII	CATG	2 cut(s)	479, 605
NlaIV	GGNNCC	4 cut(s)	73, 268, 394, 440
NmeAIII	GCCGAG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	605
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	246, 253, 333
PleI	GAGTC	1 cut(s)	440
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	440
Psp124BI	GAGCTC	2 cut(s)	81, 224
Psp6I	CCWGG	2 cut(s)	191, 215
PspFI	CCCAGC	2 cut(s)	54, 153
PspGI	CCWGG	2 cut(s)	191, 215
PspN4I	GGNNCC	4 cut(s)	73, 268, 394, 440
PspPI	GGNCC	2 cut(s)	189, 614
RsaI	GTAC	5 cut(s)	89, 185, 491, 597, 627
RsaNI	GTAC	5 cut(s)	88, 184, 490, 596, 626
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	2 cut(s)	81, 224
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	245, 252, 332
Sau3AI	GATC	4 cut(s)	237, 460, 553, 580
Sau96I	GGNCC	2 cut(s)	189, 614
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	2 cut(s)	193, 217
SduI	GDGCHC	3 cut(s)	81, 224, 269
SfaNI	GCATC	3 cut(s)	202, 337, 493
SfoI	GGCGCC	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	377, 426
SsiI	CCGC	2 cut(s)	245, 324
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	2 cut(s)	81, 224
StyD4I	CCNGG	2 cut(s)	191, 215
TaaI	ACNGT	2 cut(s)	402, 451
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	3 cut(s)	36, 456, 583
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	377, 426
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	2 cut(s)	251, 331
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	4 cut(s)	22, 115, 149, 542
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.