Protein ROOT INITIATION DEFECTIVE 3
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49180 |
| fragaria_vesca | FvH4_2g34270 FvH4_2g34270 |
| malus_domestica | MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1 |
| prunus_persica | Prupe.1G433800_v2.0.a1 |
| pyrus_communis | pycom08g07920 pycom15g07550 |
| rosa_chinensis | RchiOBHm_Chr6g0308111 |
| rosa_laevigata | RLG00000010666 |
| rosa_multiflora | Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00160530 |
| rosa_rugosa | Rorug06G0364100 Rorug06G0364200 |
| rosa_samantha | Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200 |
| rosa_wichuraiana | Rw6G041260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 301 |
| AccB1I | GGYRCC | 1 cut(s) | 167 |
| AccBSI | CCGCTC | 1 cut(s) | 352 |
| AccI | GTMKAC | 2 cut(s) | 433, 1136 |
| AccII | CGCG | 1 cut(s) | 1305 |
| AciI | CCGC | 7 cut(s) | 160, 181, 203, 308, 350, 387, 1152 |
| AclWI | GGATC | 5 cut(s) | 696, 770, 783, 964, 1273 |
| AcsI | RAATTY | 1 cut(s) | 1078 |
| AcuI | CTGAAG | 2 cut(s) | 1238, 1319 |
| AcyI | GRCGYC | 1 cut(s) | 168 |
| AfaI | GTAC | 6 cut(s) | 285, 290, 377, 596, 1085, 1214 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 209, 1098 |
| AflII | CTTAAG | 1 cut(s) | 440 |
| AflIII | ACRYGT | 2 cut(s) | 695, 1086 |
| AgsI | TTSAA | 1 cut(s) | 1018 |
| AjiI | CACGTC | 1 cut(s) | 1089 |
| AjnI | CCWGG | 1 cut(s) | 778 |
| Alw21I | GWGCWC | 1 cut(s) | 618 |
| Alw26I | GTCTC | 4 cut(s) | 549, 1149, 1288, 1414 |
| AlwI | GGATC | 5 cut(s) | 696, 770, 783, 964, 1273 |
| Ama87I | CYCGRG | 1 cut(s) | 1093 |
| AoxI | GGCC | 3 cut(s) | 117, 211, 1177 |
| ApeKI | GCWGC | 4 cut(s) | 175, 356, 830, 1424 |
| ApoI | RAATTY | 1 cut(s) | 1078 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 326 |
| AspLEI | GCGC | 3 cut(s) | 170, 197, 1305 |
| AspS9I | GGNCC | 4 cut(s) | 154, 300, 1031, 1178 |
| AsuC2I | CCSGG | 1 cut(s) | 1181 |
| AsuHPI | GGTGA | 3 cut(s) | 58, 794, 1406 |
| AvaI | CYCGRG | 1 cut(s) | 1093 |
| AvaII | GGWCC | 3 cut(s) | 154, 300, 1031 |
| BamHI | GGATCC | 1 cut(s) | 775 |
| BanI | GGYRCC | 1 cut(s) | 167 |
| BanII | GRGCYC | 1 cut(s) | 851 |
| BauI | CACGAG | 1 cut(s) | 48 |
| BbsI | GAAGAC | 1 cut(s) | 784 |
| Bbv12I | GWGCWC | 1 cut(s) | 618 |
| BbvCI | CCTCAGC | 1 cut(s) | 1273 |
| BbvI | GCAGC | 3 cut(s) | 187, 343, 817 |
| BccI | CCATC | 7 cut(s) | 97, 488, 518, 597, 806, 959, 1385 |
| BciT130I | CCWGG | 1 cut(s) | 780 |
| BciVI | GTATCC | 1 cut(s) | 15 |
| BclI | TGATCA | 1 cut(s) | 1396 |
| BcnI | CCSGG | 1 cut(s) | 1181 |
| BcoDI | GTCTC | 4 cut(s) | 549, 1149, 1288, 1414 |
| BfaI | CTAG | 4 cut(s) | 20, 920, 990, 1049 |
| BfmI | CTRYAG | 1 cut(s) | 460 |
| BfoI | RGCGCY | 1 cut(s) | 171 |
| BfrI | CTTAAG | 1 cut(s) | 440 |
| BfuAI | ACCTGC | 1 cut(s) | 301 |
| BfuI | GTATCC | 1 cut(s) | 15 |
| BisI | GCNGC | 5 cut(s) | 176, 308, 357, 831, 1425 |
| BlpI | GCTNAGC | 1 cut(s) | 1332 |
| BlsI | GCNGC | 5 cut(s) | 177, 309, 358, 832, 1426 |
| BmcAI | AGTACT | 1 cut(s) | 290 |
| Bme1390I | CCNGG | 2 cut(s) | 780, 1181 |
| Bme18I | GGWCC | 3 cut(s) | 154, 300, 1031 |
| BmeT110I | CYCGRG | 1 cut(s) | 1093 |
| BmgBI | CACGTC | 1 cut(s) | 1089 |
| BmgT120I | GGNCC | 4 cut(s) | 154, 300, 1031, 1178 |
| BmiI | GGNNCC | 4 cut(s) | 155, 169, 499, 777 |
| BmrFI | CCNGG | 2 cut(s) | 780, 1181 |
| BmsI | GCATC | 7 cut(s) | 150, 647, 689, 751, 976, 978, 1372 |
| BpiI | GAAGAC | 1 cut(s) | 784 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1273 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1332 |
| BpuMI | CCSGG | 1 cut(s) | 1181 |
| Bsa29I | ATCGAT | 1 cut(s) | 882 |
| BsaBI | GATNNNNATC | 2 cut(s) | 567, 1395 |
| BsaHI | GRCGYC | 1 cut(s) | 168 |
| BsaI | GGTCTC | 1 cut(s) | 549 |
| BsaJI | CCNNGG | 1 cut(s) | 1171 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 209, 1098 |
| Bse118I | RCCGGY | 3 cut(s) | 137, 164, 800 |
| Bse1I | ACTGG | 7 cut(s) | 79, 296, 433, 777, 940, 1034, 1131 |
| Bse8I | GATNNNNATC | 2 cut(s) | 567, 1395 |
| BseBI | CCWGG | 1 cut(s) | 780 |
| BseCI | ATCGAT | 1 cut(s) | 882 |
| BseDI | CCNNGG | 1 cut(s) | 1171 |
| BseGI | GGATG | 6 cut(s) | 496, 529, 640, 662, 991, 1396 |
| BseJI | GATNNNNATC | 2 cut(s) | 567, 1395 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 209, 1098 |
| BseMII | CTCAG | 5 cut(s) | 263, 834, 1085, 1287, 1346 |
| BseNI | ACTGG | 7 cut(s) | 79, 296, 433, 777, 940, 1034, 1131 |
| BseRI | GAGGAG | 3 cut(s) | 235, 262, 1419 |
| BseXI | GCAGC | 3 cut(s) | 187, 343, 817 |
| BsgI | GTGCAG | 1 cut(s) | 816 |
| Bsh1236I | CGCG | 1 cut(s) | 1305 |
| BshFI | GGCC | 3 cut(s) | 119, 213, 1179 |
| BshNI | GGYRCC | 1 cut(s) | 167 |
| BshVI | ATCGAT | 1 cut(s) | 882 |
| BsiHKAI | GWGCWC | 1 cut(s) | 618 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1093 |
| BsiSI | CCGG | 4 cut(s) | 138, 165, 801, 1181 |
| BslFI | GGGAC | 2 cut(s) | 167, 385 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 209, 1098 |
| BsmAI | GTCTC | 4 cut(s) | 549, 1149, 1288, 1414 |
| BsmFI | GGGAC | 2 cut(s) | 167, 385 |
| BsnI | GGCC | 3 cut(s) | 119, 213, 1179 |
| Bso31I | GGTCTC | 1 cut(s) | 549 |
| BsoBI | CYCGRG | 1 cut(s) | 1093 |
| Bsp1286I | GDGCHC | 2 cut(s) | 618, 851 |
| Bsp1407I | TGTACA | 3 cut(s) | 283, 594, 1212 |
| Bsp143I | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1332 |
| BspACI | CCGC | 7 cut(s) | 160, 181, 203, 308, 350, 387, 1152 |
| BspANI | GGCC | 3 cut(s) | 119, 213, 1179 |
| BspCNI | CTCAG | 5 cut(s) | 262, 835, 1084, 1286, 1345 |
| BspDI | ATCGAT | 1 cut(s) | 882 |
| BspFNI | CGCG | 1 cut(s) | 1305 |
| BspLI | GGNNCC | 4 cut(s) | 155, 169, 499, 777 |
| BspMI | ACCTGC | 1 cut(s) | 301 |
| BspPI | GGATC | 5 cut(s) | 696, 770, 783, 964, 1273 |
| BspQI | GCTCTTC | 1 cut(s) | 317 |
| BspT107I | GGYRCC | 1 cut(s) | 167 |
| BspTI | CTTAAG | 1 cut(s) | 440 |
| BspTNI | GGTCTC | 1 cut(s) | 549 |
| BsrBI | CCGCTC | 1 cut(s) | 352 |
| BsrFI | RCCGGY | 3 cut(s) | 137, 164, 800 |
| BsrGI | TGTACA | 3 cut(s) | 283, 594, 1212 |
| BsrI | ACTGG | 7 cut(s) | 79, 296, 433, 777, 940, 1034, 1131 |
| BssAI | RCCGGY | 3 cut(s) | 137, 164, 800 |
| BssECI | CCNNGG | 1 cut(s) | 1171 |
| BssMI | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| BssNAI | GTATAC | 1 cut(s) | 1137 |
| BssNI | GRCGYC | 1 cut(s) | 168 |
| BssSI | CACGAG | 1 cut(s) | 48 |
| BssT1I | CCWWGG | 1 cut(s) | 1171 |
| Bst1107I | GTATAC | 1 cut(s) | 1137 |
| Bst2BI | CACGAG | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 1 cut(s) | 780 |
| Bst4CI | ACNGT | 1 cut(s) | 288 |
| Bst6I | CTCTTC | 1 cut(s) | 317 |
| BstACI | GRCGYC | 1 cut(s) | 168 |
| BstAFI | CTTAAG | 1 cut(s) | 440 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 839 |
| BstAUI | TGTACA | 3 cut(s) | 283, 594, 1212 |
| BstC8I | GCNNGC | 3 cut(s) | 139, 354, 453 |
| BstDEI | CTNAG | 5 cut(s) | 249, 843, 1071, 1273, 1332 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1096 |
| BstF5I | GGATG | 6 cut(s) | 496, 529, 640, 662, 991, 1396 |
| BstFNI | CGCG | 1 cut(s) | 1305 |
| BstH2I | RGCGCY | 1 cut(s) | 171 |
| BstHHI | GCGC | 3 cut(s) | 170, 197, 1305 |
| BstKTI | GATC | 6 cut(s) | 345, 691, 778, 959, 1268, 1399 |
| BstMAI | GTCTC | 4 cut(s) | 549, 1149, 1288, 1414 |
| BstMBI | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 219, 259, 839 |
| BstNI | CCWGG | 1 cut(s) | 780 |
| BstNSI | RCATGY | 4 cut(s) | 455, 601, 699, 1025 |
| BstSCI | CCNGG | 2 cut(s) | 778, 1179 |
| BstSFI | CTRYAG | 1 cut(s) | 460 |
| BstUI | CGCG | 1 cut(s) | 1305 |
| BstV1I | GCAGC | 3 cut(s) | 187, 343, 817 |
| BstV2I | GAAGAC | 1 cut(s) | 784 |
| BstX2I | RGATCY | 2 cut(s) | 775, 1265 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1327 |
| BstYI | RGATCY | 2 cut(s) | 775, 1265 |
| BstZ17I | GTATAC | 1 cut(s) | 1137 |
| Bsu15I | ATCGAT | 1 cut(s) | 882 |
| BsuI | GTATCC | 1 cut(s) | 15 |
| BsuRI | GGCC | 3 cut(s) | 119, 213, 1179 |
| BsuTUI | ATCGAT | 1 cut(s) | 882 |
| BtrI | CACGTC | 1 cut(s) | 1089 |
| BtsCI | GGATG | 6 cut(s) | 496, 529, 640, 662, 991, 1396 |
| BtsI | GCAGTG | 1 cut(s) | 1343 |
| BtsIMutI | CAGTG | 5 cut(s) | 770, 1041, 1124, 1218, 1343 |
| BveI | ACCTGC | 1 cut(s) | 301 |
| Cac8I | GCNNGC | 3 cut(s) | 139, 354, 453 |
| CfoI | GCGC | 3 cut(s) | 170, 197, 1305 |
| Cfr10I | RCCGGY | 3 cut(s) | 137, 164, 800 |
| Cfr13I | GGNCC | 4 cut(s) | 154, 300, 1031, 1178 |
| ClaI | ATCGAT | 1 cut(s) | 882 |
| CseI | GACGC | 1 cut(s) | 211 |
| Csp6I | GTAC | 6 cut(s) | 284, 289, 376, 595, 1084, 1213 |
| CviAII | CATG | 6 cut(s) | 209, 452, 598, 696, 1022, 1103 |
| CviQI | GTAC | 6 cut(s) | 284, 289, 376, 595, 1084, 1213 |
| DdeI | CTNAG | 5 cut(s) | 249, 843, 1071, 1273, 1332 |
| DinI | GGCGCC | 1 cut(s) | 169 |
| DpnI | GATC | 6 cut(s) | 344, 690, 777, 958, 1267, 1398 |
| DpnII | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| Eam1104I | CTCTTC | 1 cut(s) | 317 |
| EarI | CTCTTC | 1 cut(s) | 317 |
| EciI | GGCGGA | 2 cut(s) | 192, 1167 |
| Eco130I | CCWWGG | 1 cut(s) | 1171 |
| Eco24I | GRGCYC | 1 cut(s) | 851 |
| Eco31I | GGTCTC | 1 cut(s) | 549 |
| Eco47I | GGWCC | 3 cut(s) | 154, 300, 1031 |
| Eco57I | CTGAAG | 2 cut(s) | 1238, 1319 |
| Eco88I | CYCGRG | 1 cut(s) | 1093 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1096 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRI | GAATTC | 1 cut(s) | 1078 |
| EcoRII | CCWGG | 1 cut(s) | 778 |
| EcoT14I | CCWWGG | 1 cut(s) | 1171 |
| EcoT22I | ATGCAT | 1 cut(s) | 603 |
| EcoT38I | GRGCYC | 1 cut(s) | 851 |
| EgeI | GGCGCC | 1 cut(s) | 169 |
| EheI | GGCGCC | 1 cut(s) | 169 |
| ErhI | CCWWGG | 1 cut(s) | 1171 |
| FaeI | CATG | 6 cut(s) | 212, 455, 601, 699, 1025, 1106 |
| FaqI | GGGAC | 2 cut(s) | 167, 385 |
| FatI | CATG | 6 cut(s) | 208, 451, 597, 695, 1021, 1102 |
| FauNDI | CATATG | 1 cut(s) | 925 |
| FbaI | TGATCA | 1 cut(s) | 1396 |
| FblI | GTMKAC | 2 cut(s) | 433, 1136 |
| Fnu4HI | GCNGC | 5 cut(s) | 176, 308, 357, 831, 1425 |
| FokI | GGATG | 6 cut(s) | 503, 536, 647, 669, 998, 1403 |
| FriOI | GRGCYC | 1 cut(s) | 851 |
| Fsp4HI | GCNGC | 5 cut(s) | 176, 308, 357, 831, 1425 |
| FspBI | CTAG | 4 cut(s) | 20, 920, 990, 1049 |
| GlaI | GCGC | 3 cut(s) | 169, 196, 1304 |
| GluI | GCNGC | 5 cut(s) | 176, 308, 357, 831, 1425 |
| HaeII | RGCGCY | 1 cut(s) | 171 |
| HaeIII | GGCC | 3 cut(s) | 119, 213, 1179 |
| HapII | CCGG | 4 cut(s) | 138, 165, 801, 1181 |
| HgaI | GACGC | 1 cut(s) | 211 |
| HhaI | GCGC | 3 cut(s) | 170, 197, 1305 |
| Hin1I | GRCGYC | 1 cut(s) | 168 |
| Hin1II | CATG | 6 cut(s) | 212, 455, 601, 699, 1025, 1106 |
| Hin6I | GCGC | 3 cut(s) | 168, 195, 1303 |
| HinP1I | GCGC | 3 cut(s) | 168, 195, 1303 |
| HincII | GTYRAC | 1 cut(s) | 578 |
| HindII | GTYRAC | 1 cut(s) | 578 |
| HinfI | GANTC | 5 cut(s) | 23, 85, 234, 895, 1407 |
| HpaII | CCGG | 4 cut(s) | 138, 165, 801, 1181 |
| HphI | GGTGA | 3 cut(s) | 58, 794, 1406 |
| Hpy166II | GTNNAC | 4 cut(s) | 434, 578, 1086, 1137 |
| Hpy188I | TCNGA | 4 cut(s) | 490, 520, 961, 1074 |
| Hpy188III | TCNNGA | 4 cut(s) | 50, 892, 954, 1095 |
| Hpy8I | GTNNAC | 4 cut(s) | 434, 578, 1086, 1137 |
| Hpy99I | CGWCG | 2 cut(s) | 127, 227 |
| HpyAV | CCTTC | 4 cut(s) | 273, 362, 1092, 1142 |
| HpyCH4III | ACNGT | 1 cut(s) | 288 |
| HpyCH4IV | ACGT | 3 cut(s) | 374, 825, 1088 |
| HpyCH4V | TGCA | 9 cut(s) | 601, 660, 770, 833, 874, 1025, 1191, 1363, 1424 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 219, 259, 839 |
| HpyF3I | CTNAG | 5 cut(s) | 249, 843, 1071, 1273, 1332 |
| HpySE526I | ACGT | 3 cut(s) | 374, 825, 1088 |
| Hsp92I | GRCGYC | 1 cut(s) | 168 |
| Hsp92II | CATG | 6 cut(s) | 212, 455, 601, 699, 1025, 1106 |
| HspAI | GCGC | 3 cut(s) | 168, 195, 1303 |
| KasI | GGCGCC | 1 cut(s) | 167 |
| KroI | GCCGGC | 1 cut(s) | 137 |
| KroNI | GCCGGC | 1 cut(s) | 139 |
| Ksp22I | TGATCA | 1 cut(s) | 1396 |
| Kzo9I | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| LguI | GCTCTTC | 1 cut(s) | 317 |
| LmnI | GCTCC | 5 cut(s) | 106, 183, 258, 503, 613 |
| Lsp1109I | GCAGC | 3 cut(s) | 187, 343, 817 |
| LweI | GCATC | 7 cut(s) | 150, 647, 689, 751, 976, 978, 1372 |
| MaeI | CTAG | 4 cut(s) | 20, 920, 990, 1049 |
| MaeII | ACGT | 3 cut(s) | 374, 825, 1088 |
| MaeIII | GTNAC | 3 cut(s) | 628, 640, 910 |
| MalI | GATC | 6 cut(s) | 344, 690, 777, 958, 1267, 1398 |
| MbiI | CCGCTC | 1 cut(s) | 352 |
| MboI | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| MboII | GAAGA | 4 cut(s) | 334, 347, 784, 974 |
| MflI | RGATCY | 2 cut(s) | 775, 1265 |
| MhlI | GDGCHC | 2 cut(s) | 618, 851 |
| MluCI | AATT | 6 cut(s) | 62, 604, 756, 940, 1078, 1195 |
| Mly113I | GGCGCC | 1 cut(s) | 168 |
| MlyI | GAGTC | 1 cut(s) | 1416 |
| MmeI | TCCRAC | 1 cut(s) | 498 |
| Mph1103I | ATGCAT | 1 cut(s) | 603 |
| MroNI | GCCGGC | 1 cut(s) | 137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 326 |
| MseI | TTAA | 4 cut(s) | 423, 441, 837, 855 |
| MslI | CAYNNNNRTG | 2 cut(s) | 671, 1325 |
| MspCI | CTTAAG | 1 cut(s) | 440 |
| MspI | CCGG | 4 cut(s) | 138, 165, 801, 1181 |
| MspR9I | CCNGG | 2 cut(s) | 780, 1181 |
| MvaI | CCWGG | 1 cut(s) | 780 |
| MvnI | CGCG | 1 cut(s) | 1305 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 219, 259, 839 |
| NaeI | GCCGGC | 1 cut(s) | 139 |
| NarI | GGCGCC | 1 cut(s) | 168 |
| NciI | CCSGG | 1 cut(s) | 1181 |
| NdeI | CATATG | 1 cut(s) | 925 |
| NdeII | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| NgoMIV | GCCGGC | 1 cut(s) | 137 |
| NlaIII | CATG | 6 cut(s) | 212, 455, 601, 699, 1025, 1106 |
| NlaIV | GGNNCC | 4 cut(s) | 155, 169, 499, 777 |
| NmeAIII | GCCGAG | 1 cut(s) | 196 |
| NmuCI | GTSAC | 1 cut(s) | 640 |
| NsiI | ATGCAT | 1 cut(s) | 603 |
| NspI | RCATGY | 4 cut(s) | 455, 601, 699, 1025 |
| PaeI | GCATGC | 1 cut(s) | 455 |
| PaeR7I | CTCGAG | 1 cut(s) | 1093 |
| PciI | ACATGT | 1 cut(s) | 695 |
| PciSI | GCTCTTC | 1 cut(s) | 317 |
| PdiI | GCCGGC | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 326 |
| PfeI | GAWTC | 4 cut(s) | 23, 85, 234, 895 |
| PkrI | GCNGC | 5 cut(s) | 177, 309, 358, 832, 1426 |
| PleI | GAGTC | 1 cut(s) | 1415 |
| PluTI | GGCGCC | 1 cut(s) | 171 |
| PpsI | GAGTC | 1 cut(s) | 1415 |
| PpuMI | RGGWCCY | 1 cut(s) | 154 |
| PscI | ACATGT | 1 cut(s) | 695 |
| Psp5II | RGGWCCY | 1 cut(s) | 154 |
| Psp6I | CCWGG | 1 cut(s) | 778 |
| PspGI | CCWGG | 1 cut(s) | 778 |
| PspN4I | GGNNCC | 4 cut(s) | 155, 169, 499, 777 |
| PspPI | GGNCC | 4 cut(s) | 154, 300, 1031, 1178 |
| PspPPI | RGGWCCY | 1 cut(s) | 154 |
| PsuI | RGATCY | 2 cut(s) | 775, 1265 |
| RsaI | GTAC | 6 cut(s) | 285, 290, 377, 596, 1085, 1214 |
| RsaNI | GTAC | 6 cut(s) | 284, 289, 376, 595, 1084, 1213 |
| RseI | CAYNNNNRTG | 2 cut(s) | 671, 1325 |
| SapI | GCTCTTC | 1 cut(s) | 317 |
| SaqAI | TTAA | 4 cut(s) | 423, 441, 837, 855 |
| SatI | GCNGC | 5 cut(s) | 176, 308, 357, 831, 1425 |
| Sau3AI | GATC | 6 cut(s) | 342, 688, 775, 956, 1265, 1396 |
| Sau96I | GGNCC | 4 cut(s) | 154, 300, 1031, 1178 |
| ScaI | AGTACT | 1 cut(s) | 290 |
| SchI | GAGTC | 1 cut(s) | 1416 |
| ScrFI | CCNGG | 2 cut(s) | 780, 1181 |
| SduI | GDGCHC | 2 cut(s) | 618, 851 |
| SfaNI | GCATC | 7 cut(s) | 150, 647, 689, 751, 976, 978, 1372 |
| SfcI | CTRYAG | 1 cut(s) | 460 |
| SfoI | GGCGCC | 1 cut(s) | 169 |
| Sfr274I | CTCGAG | 1 cut(s) | 1093 |
| SgrAI | CRCCGGYG | 1 cut(s) | 164 |
| SinI | GGWCC | 3 cut(s) | 154, 300, 1031 |
| SlaI | CTCGAG | 1 cut(s) | 1093 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 671, 1325 |
| SmlI | CTYRAG | 2 cut(s) | 440, 1093 |
| SmoI | CTYRAG | 2 cut(s) | 440, 1093 |
| SphI | GCATGC | 1 cut(s) | 455 |
| Sse9I | AATT | 6 cut(s) | 62, 604, 756, 940, 1078, 1195 |
| SsiI | CCGC | 7 cut(s) | 160, 181, 203, 308, 350, 387, 1152 |
| SspDI | GGCGCC | 1 cut(s) | 167 |
| SspI | AATATT | 2 cut(s) | 739, 1045 |
| SspMI | CTAG | 4 cut(s) | 20, 920, 990, 1049 |
| StyD4I | CCNGG | 2 cut(s) | 778, 1179 |
| StyI | CCWWGG | 1 cut(s) | 1171 |
| TaaI | ACNGT | 1 cut(s) | 288 |
| TaiI | ACGT | 3 cut(s) | 377, 828, 1091 |
| TaqI | TCGA | 7 cut(s) | 83, 132, 561, 882, 893, 1057, 1094 |
| TasI | AATT | 6 cut(s) | 62, 604, 756, 940, 1078, 1195 |
| TatI | WGTACW | 4 cut(s) | 283, 288, 594, 1212 |
| TauI | GCSGC | 1 cut(s) | 310 |
| TfiI | GAWTC | 4 cut(s) | 23, 85, 234, 895 |
| Tru1I | TTAA | 4 cut(s) | 423, 441, 837, 855 |
| Tru9I | TTAA | 4 cut(s) | 423, 441, 837, 855 |
| TscAI | CASTG | 5 cut(s) | 777, 1041, 1131, 1225, 1343 |
| TseFI | GTSAC | 1 cut(s) | 640 |
| TseI | GCWGC | 4 cut(s) | 175, 356, 830, 1424 |
| Tsp45I | GTSAC | 1 cut(s) | 640 |
| TspDTI | ATGAA | 4 cut(s) | 1091, 1098, 1247, 1326 |
| TspGWI | ACGGA | 3 cut(s) | 245, 626, 647 |
| TspRI | CASTG | 5 cut(s) | 777, 1041, 1131, 1225, 1343 |
| Vha464I | CTTAAG | 1 cut(s) | 440 |
| VpaK11BI | GGWCC | 3 cut(s) | 154, 300, 1031 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1096 |
| XapI | RAATTY | 1 cut(s) | 1078 |
| XceI | RCATGY | 4 cut(s) | 455, 601, 699, 1025 |
| XhoI | CTCGAG | 1 cut(s) | 1093 |
| XmiI | GTMKAC | 2 cut(s) | 433, 1136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 326 |
| XspI | CTAG | 4 cut(s) | 20, 920, 990, 1049 |
| ZrmI | AGTACT | 1 cut(s) | 290 |
| Zsp2I | ATGCAT | 1 cut(s) | 603 |