Protein ROOT INITIATION DEFECTIVE 3
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49180 |
| fragaria_vesca | FvH4_2g34270 FvH4_2g34270 |
| malus_domestica | MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1 |
| prunus_persica | Prupe.1G433800_v2.0.a1 |
| pyrus_communis | pycom08g07920 pycom15g07550 |
| rosa_chinensis | RchiOBHm_Chr6g0308111 |
| rosa_laevigata | RLG00000010666 |
| rosa_multiflora | Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00160530 |
| rosa_rugosa | Rorug06G0364100 Rorug06G0364200 |
| rosa_samantha | Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200 |
| rosa_wichuraiana | Rw6G041260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 65 |
| AccBSI | CCGCTC | 1 cut(s) | 247 |
| AccI | GTMKAC | 1 cut(s) | 328 |
| AccII | CGCG | 1 cut(s) | 156 |
| AciI | CCGC | 7 cut(s) | 79, 101, 154, 165, 245, 282, 1323 |
| AclWI | GGATC | 4 cut(s) | 591, 665, 678, 859 |
| AcoI | YGGCCR | 1 cut(s) | 1135 |
| AcsI | RAATTY | 1 cut(s) | 973 |
| AcuI | CTGAAG | 2 cut(s) | 1062, 1136 |
| AcyI | GRCGYC | 1 cut(s) | 66 |
| AfaI | GTAC | 3 cut(s) | 185, 821, 1112 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 107, 993 |
| AflII | CTTAAG | 2 cut(s) | 335, 1058 |
| AflIII | ACRYGT | 1 cut(s) | 682 |
| AgsI | TTSAA | 1 cut(s) | 913 |
| AjnI | CCWGG | 3 cut(s) | 673, 1077, 1115 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 24, 56 |
| AluBI | AGCT | 8 cut(s) | 76, 88, 151, 222, 362, 1040, 1150, 1282 |
| AluI | AGCT | 8 cut(s) | 76, 88, 151, 222, 362, 1040, 1150, 1282 |
| Alw26I | GTCTC | 2 cut(s) | 150, 1186 |
| AlwI | GGATC | 4 cut(s) | 591, 665, 678, 859 |
| AoxI | GGCC | 2 cut(s) | 109, 1135 |
| ApeKI | GCWGC | 4 cut(s) | 45, 73, 251, 725 |
| ApoI | RAATTY | 1 cut(s) | 973 |
| AseI | ATTAAT | 2 cut(s) | 449, 1131 |
| AspLEI | GCGC | 2 cut(s) | 68, 95 |
| AspS9I | GGNCC | 3 cut(s) | 52, 438, 926 |
| AsuHPI | GGTGA | 2 cut(s) | 689, 1304 |
| AsuII | TTCGAA | 1 cut(s) | 466 |
| AvaII | GGWCC | 3 cut(s) | 52, 438, 926 |
| BaeGI | GKGCMC | 2 cut(s) | 269, 513 |
| BalI | TGGCCA | 1 cut(s) | 1137 |
| BamHI | GGATCC | 1 cut(s) | 670 |
| BanI | GGYRCC | 1 cut(s) | 65 |
| BanII | GRGCYC | 1 cut(s) | 162 |
| BbsI | GAAGAC | 2 cut(s) | 679, 1050 |
| BbvCI | CCTCAGC | 1 cut(s) | 1171 |
| BbvI | GCAGC | 4 cut(s) | 32, 85, 238, 712 |
| BccI | CCATC | 5 cut(s) | 413, 701, 854, 1118, 1283 |
| BceAI | ACGGC | 1 cut(s) | 124 |
| BciT130I | CCWGG | 3 cut(s) | 675, 1079, 1117 |
| BciVI | GTATCC | 2 cut(s) | 536, 1041 |
| BclI | TGATCA | 1 cut(s) | 1294 |
| BcoDI | GTCTC | 2 cut(s) | 150, 1186 |
| BfaI | CTAG | 2 cut(s) | 321, 944 |
| BfmI | CTRYAG | 2 cut(s) | 355, 1098 |
| BfoI | RGCGCY | 1 cut(s) | 69 |
| BfrI | CTTAAG | 2 cut(s) | 335, 1058 |
| BfuI | GTATCC | 2 cut(s) | 536, 1041 |
| BisI | GCNGC | 6 cut(s) | 46, 74, 245, 252, 726, 1323 |
| BlsI | GCNGC | 6 cut(s) | 47, 75, 246, 253, 727, 1324 |
| BmcAI | AGTACT | 1 cut(s) | 185 |
| Bme1390I | CCNGG | 3 cut(s) | 675, 1079, 1117 |
| Bme18I | GGWCC | 3 cut(s) | 52, 438, 926 |
| BmgT120I | GGNCC | 3 cut(s) | 52, 438, 926 |
| BmiI | GGNNCC | 5 cut(s) | 53, 67, 134, 440, 672 |
| BmrFI | CCNGG | 3 cut(s) | 675, 1079, 1117 |
| BmsI | GCATC | 3 cut(s) | 646, 871, 1270 |
| BpiI | GAAGAC | 2 cut(s) | 679, 1050 |
| BpmI | CTGGAG | 1 cut(s) | 973 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1171 |
| Bpu14I | TTCGAA | 1 cut(s) | 466 |
| BpuEI | CTTGAG | 1 cut(s) | 189 |
| BsaAI | YACGTR | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1293 |
| BsaHI | GRCGYC | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 1 cut(s) | 1115 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 107, 993 |
| Bse118I | RCCGGY | 2 cut(s) | 62, 695 |
| Bse1I | ACTGG | 6 cut(s) | 181, 191, 585, 672, 929, 1026 |
| Bse3DI | GCAATG | 2 cut(s) | 562, 1007 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1293 |
| BseBI | CCWGG | 3 cut(s) | 675, 1079, 1117 |
| BseDI | CCNNGG | 1 cut(s) | 1115 |
| BseGI | GGATG | 6 cut(s) | 10, 424, 865, 886, 900, 1294 |
| BseJI | GATNNNNATC | 1 cut(s) | 1293 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 107, 993 |
| BseMI | GCAATG | 2 cut(s) | 562, 1007 |
| BseMII | CTCAG | 3 cut(s) | 161, 980, 1185 |
| BseNI | ACTGG | 6 cut(s) | 181, 191, 585, 672, 929, 1026 |
| BseSI | GKGCMC | 2 cut(s) | 269, 513 |
| BseXI | GCAGC | 4 cut(s) | 32, 85, 238, 712 |
| BseYI | CCCAGC | 2 cut(s) | 48, 226 |
| BsgI | GTGCAG | 1 cut(s) | 711 |
| Bsh1236I | CGCG | 1 cut(s) | 156 |
| Bsh1285I | CGRYCG | 1 cut(s) | 30 |
| BshFI | GGCC | 2 cut(s) | 111, 1137 |
| BshNI | GGYRCC | 1 cut(s) | 65 |
| BsiEI | CGRYCG | 1 cut(s) | 30 |
| BsiSI | CCGG | 3 cut(s) | 63, 171, 696 |
| BslFI | GGGAC | 2 cut(s) | 65, 424 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 107, 993 |
| BsmAI | GTCTC | 2 cut(s) | 150, 1186 |
| BsmBI | CGTCTC | 1 cut(s) | 150 |
| BsmFI | GGGAC | 2 cut(s) | 65, 424 |
| BsnI | GGCC | 2 cut(s) | 111, 1137 |
| Bsp119I | TTCGAA | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 3 cut(s) | 162, 269, 513 |
| Bsp1407I | TGTACA | 1 cut(s) | 819 |
| Bsp143I | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| BspACI | CCGC | 7 cut(s) | 79, 101, 154, 165, 245, 282, 1323 |
| BspANI | GGCC | 2 cut(s) | 111, 1137 |
| BspCNI | CTCAG | 3 cut(s) | 160, 979, 1184 |
| BspFNI | CGCG | 1 cut(s) | 156 |
| BspLI | GGNNCC | 5 cut(s) | 53, 67, 134, 440, 672 |
| BspPI | GGATC | 4 cut(s) | 591, 665, 678, 859 |
| BspT104I | TTCGAA | 1 cut(s) | 466 |
| BspT107I | GGYRCC | 1 cut(s) | 65 |
| BspTI | CTTAAG | 2 cut(s) | 335, 1058 |
| BsrBI | CCGCTC | 1 cut(s) | 247 |
| BsrDI | GCAATG | 2 cut(s) | 562, 1007 |
| BsrFI | RCCGGY | 2 cut(s) | 62, 695 |
| BsrGI | TGTACA | 1 cut(s) | 819 |
| BsrI | ACTGG | 6 cut(s) | 181, 191, 585, 672, 929, 1026 |
| BssAI | RCCGGY | 2 cut(s) | 62, 695 |
| BssECI | CCNNGG | 1 cut(s) | 1115 |
| BssMI | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| BssNI | GRCGYC | 1 cut(s) | 66 |
| Bst2UI | CCWGG | 3 cut(s) | 675, 1079, 1117 |
| Bst4CI | ACNGT | 5 cut(s) | 132, 260, 548, 805, 824 |
| Bst6I | CTCTTC | 1 cut(s) | 402 |
| BstACI | GRCGYC | 1 cut(s) | 66 |
| BstAFI | CTTAAG | 2 cut(s) | 335, 1058 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 45, 734 |
| BstAUI | TGTACA | 1 cut(s) | 819 |
| BstBAI | YACGTR | 1 cut(s) | 270 |
| BstBI | TTCGAA | 1 cut(s) | 466 |
| BstC8I | GCNNGC | 5 cut(s) | 37, 158, 249, 348, 513 |
| BstDEI | CTNAG | 5 cut(s) | 147, 198, 814, 966, 1171 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 991 |
| BstF5I | GGATG | 6 cut(s) | 10, 424, 865, 886, 900, 1294 |
| BstFNI | CGCG | 1 cut(s) | 156 |
| BstH2I | RGCGCY | 1 cut(s) | 69 |
| BstHHI | GCGC | 2 cut(s) | 68, 95 |
| BstKTI | GATC | 7 cut(s) | 30, 586, 673, 854, 1188, 1217, 1297 |
| BstMAI | GTCTC | 2 cut(s) | 150, 1186 |
| BstMBI | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| BstMCI | CGRYCG | 1 cut(s) | 30 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 45, 117, 157, 734 |
| BstNI | CCWGG | 3 cut(s) | 675, 1079, 1117 |
| BstNSI | RCATGY | 4 cut(s) | 350, 686, 920, 1089 |
| BstSCI | CCNGG | 3 cut(s) | 673, 1077, 1115 |
| BstSFI | CTRYAG | 2 cut(s) | 355, 1098 |
| BstSLI | GKGCMC | 2 cut(s) | 269, 513 |
| BstUI | CGCG | 1 cut(s) | 156 |
| BstV1I | GCAGC | 4 cut(s) | 32, 85, 238, 712 |
| BstV2I | GAAGAC | 2 cut(s) | 679, 1050 |
| BstX2I | RGATCY | 1 cut(s) | 670 |
| BstYI | RGATCY | 1 cut(s) | 670 |
| BsuI | GTATCC | 2 cut(s) | 536, 1041 |
| BsuRI | GGCC | 2 cut(s) | 111, 1137 |
| BtsCI | GGATG | 6 cut(s) | 10, 424, 865, 886, 900, 1294 |
| BtsI | GCAGTG | 1 cut(s) | 1241 |
| BtsIMutI | CAGTG | 6 cut(s) | 265, 578, 665, 936, 1019, 1241 |
| Cac8I | GCNNGC | 5 cut(s) | 37, 158, 249, 348, 513 |
| CfoI | GCGC | 2 cut(s) | 68, 95 |
| Cfr10I | RCCGGY | 2 cut(s) | 62, 695 |
| Cfr13I | GGNCC | 3 cut(s) | 52, 438, 926 |
| CseI | GACGC | 2 cut(s) | 109, 564 |
| Csp6I | GTAC | 3 cut(s) | 184, 820, 1111 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 634, 669 |
| CviAII | CATG | 7 cut(s) | 347, 497, 683, 917, 998, 1086, 1202 |
| CviQI | GTAC | 3 cut(s) | 184, 820, 1111 |
| DdeI | CTNAG | 5 cut(s) | 147, 198, 814, 966, 1171 |
| DinI | GGCGCC | 1 cut(s) | 67 |
| DpnI | GATC | 7 cut(s) | 29, 585, 672, 853, 1187, 1216, 1296 |
| DpnII | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| EaeI | YGGCCR | 1 cut(s) | 1135 |
| Eam1104I | CTCTTC | 1 cut(s) | 402 |
| EarI | CTCTTC | 1 cut(s) | 402 |
| EciI | GGCGGA | 3 cut(s) | 90, 154, 297 |
| Eco24I | GRGCYC | 1 cut(s) | 162 |
| Eco47I | GGWCC | 3 cut(s) | 52, 438, 926 |
| Eco57I | CTGAAG | 2 cut(s) | 1062, 1136 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 991 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoRI | GAATTC | 1 cut(s) | 973 |
| EcoRII | CCWGG | 3 cut(s) | 673, 1077, 1115 |
| EcoT38I | GRGCYC | 1 cut(s) | 162 |
| EgeI | GGCGCC | 1 cut(s) | 67 |
| EheI | GGCGCC | 1 cut(s) | 67 |
| Esp3I | CGTCTC | 1 cut(s) | 150 |
| FaeI | CATG | 7 cut(s) | 350, 500, 686, 920, 1001, 1089, 1205 |
| FaqI | GGGAC | 2 cut(s) | 65, 424 |
| FatI | CATG | 7 cut(s) | 346, 496, 682, 916, 997, 1085, 1201 |
| FbaI | TGATCA | 1 cut(s) | 1294 |
| FblI | GTMKAC | 1 cut(s) | 328 |
| Fnu4HI | GCNGC | 6 cut(s) | 46, 74, 245, 252, 726, 1323 |
| FokI | GGATG | 6 cut(s) | 17, 431, 872, 887, 893, 1301 |
| FriOI | GRGCYC | 1 cut(s) | 162 |
| Fsp4HI | GCNGC | 6 cut(s) | 46, 74, 245, 252, 726, 1323 |
| FspBI | CTAG | 2 cut(s) | 321, 944 |
| GlaI | GCGC | 2 cut(s) | 67, 94 |
| GluI | GCNGC | 6 cut(s) | 46, 74, 245, 252, 726, 1323 |
| GsaI | CCCAGC | 2 cut(s) | 52, 230 |
| GsuI | CTGGAG | 1 cut(s) | 973 |
| HaeII | RGCGCY | 1 cut(s) | 69 |
| HaeIII | GGCC | 2 cut(s) | 111, 1137 |
| HapII | CCGG | 3 cut(s) | 63, 171, 696 |
| HgaI | GACGC | 2 cut(s) | 109, 564 |
| HhaI | GCGC | 2 cut(s) | 68, 95 |
| Hin1I | GRCGYC | 1 cut(s) | 66 |
| Hin1II | CATG | 7 cut(s) | 350, 500, 686, 920, 1001, 1089, 1205 |
| Hin6I | GCGC | 2 cut(s) | 66, 93 |
| HinP1I | GCGC | 2 cut(s) | 66, 93 |
| HincII | GTYRAC | 1 cut(s) | 128 |
| HindII | GTYRAC | 1 cut(s) | 128 |
| HinfI | GANTC | 2 cut(s) | 392, 1305 |
| HpaII | CCGG | 3 cut(s) | 63, 171, 696 |
| HphI | GGTGA | 2 cut(s) | 689, 1304 |
| Hpy166II | GTNNAC | 5 cut(s) | 128, 329, 680, 820, 934 |
| Hpy188I | TCNGA | 6 cut(s) | 385, 415, 751, 856, 969, 1123 |
| Hpy188III | TCNNGA | 4 cut(s) | 831, 849, 990, 1189 |
| Hpy8I | GTNNAC | 5 cut(s) | 128, 329, 680, 820, 934 |
| Hpy99I | CGWCG | 3 cut(s) | 25, 28, 125 |
| HpyAV | CCTTC | 2 cut(s) | 462, 987 |
| HpyCH4III | ACNGT | 5 cut(s) | 132, 260, 548, 805, 824 |
| HpyCH4IV | ACGT | 2 cut(s) | 269, 720 |
| HpyCH4V | TGCA | 7 cut(s) | 659, 665, 728, 769, 920, 1089, 1261 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 45, 117, 157, 734 |
| HpyF3I | CTNAG | 5 cut(s) | 147, 198, 814, 966, 1171 |
| HpySE526I | ACGT | 2 cut(s) | 269, 720 |
| Hsp92I | GRCGYC | 1 cut(s) | 66 |
| Hsp92II | CATG | 7 cut(s) | 350, 500, 686, 920, 1001, 1089, 1205 |
| HspAI | GCGC | 2 cut(s) | 66, 93 |
| KasI | GGCGCC | 1 cut(s) | 65 |
| Ksp22I | TGATCA | 1 cut(s) | 1294 |
| Kzo9I | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| LmnI | GCTCC | 2 cut(s) | 81, 156 |
| Lsp1109I | GCAGC | 4 cut(s) | 32, 85, 238, 712 |
| LweI | GCATC | 3 cut(s) | 646, 871, 1270 |
| MaeI | CTAG | 2 cut(s) | 321, 944 |
| MaeII | ACGT | 2 cut(s) | 269, 720 |
| MaeIII | GTNAC | 4 cut(s) | 523, 535, 576, 805 |
| MalI | GATC | 7 cut(s) | 29, 585, 672, 853, 1187, 1216, 1296 |
| MbiI | CCGCTC | 1 cut(s) | 247 |
| MboI | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| MboII | GAAGA | 5 cut(s) | 389, 679, 975, 1055, 1252 |
| MfeI | CAATTG | 2 cut(s) | 660, 778 |
| MflI | RGATCY | 1 cut(s) | 670 |
| MhlI | GDGCHC | 3 cut(s) | 162, 269, 513 |
| MlsI | TGGCCA | 1 cut(s) | 1137 |
| MluCI | AATT | 6 cut(s) | 402, 660, 778, 835, 973, 1093 |
| MluNI | TGGCCA | 1 cut(s) | 1137 |
| Mly113I | GGCGCC | 1 cut(s) | 66 |
| MlyI | GAGTC | 1 cut(s) | 386 |
| MmeI | TCCRAC | 1 cut(s) | 393 |
| Mox20I | TGGCCA | 1 cut(s) | 1137 |
| MscI | TGGCCA | 1 cut(s) | 1137 |
| MseI | TTAA | 6 cut(s) | 216, 336, 449, 732, 1059, 1131 |
| MslI | CAYNNNNRTG | 2 cut(s) | 566, 905 |
| Msp20I | TGGCCA | 1 cut(s) | 1137 |
| MspCI | CTTAAG | 2 cut(s) | 335, 1058 |
| MspI | CCGG | 3 cut(s) | 63, 171, 696 |
| MspR9I | CCNGG | 3 cut(s) | 675, 1079, 1117 |
| MunI | CAATTG | 2 cut(s) | 660, 778 |
| MvaI | CCWGG | 3 cut(s) | 675, 1079, 1117 |
| MvnI | CGCG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 45, 117, 157, 734 |
| NarI | GGCGCC | 1 cut(s) | 66 |
| NdeII | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| NlaIII | CATG | 7 cut(s) | 350, 500, 686, 920, 1001, 1089, 1205 |
| NlaIV | GGNNCC | 5 cut(s) | 53, 67, 134, 440, 672 |
| NmeAIII | GCCGAG | 1 cut(s) | 94 |
| NmuCI | GTSAC | 2 cut(s) | 535, 576 |
| NspI | RCATGY | 4 cut(s) | 350, 686, 920, 1089 |
| NspV | TTCGAA | 1 cut(s) | 466 |
| PaeI | GCATGC | 1 cut(s) | 350 |
| PciI | ACATGT | 1 cut(s) | 682 |
| PfeI | GAWTC | 1 cut(s) | 1305 |
| PkrI | GCNGC | 6 cut(s) | 47, 75, 246, 253, 727, 1324 |
| Ple19I | CGATCG | 1 cut(s) | 30 |
| PleI | GAGTC | 1 cut(s) | 386 |
| PluTI | GGCGCC | 1 cut(s) | 69 |
| PpsI | GAGTC | 1 cut(s) | 386 |
| Ppu21I | YACGTR | 1 cut(s) | 270 |
| PpuMI | RGGWCCY | 1 cut(s) | 52 |
| PscI | ACATGT | 1 cut(s) | 682 |
| PshBI | ATTAAT | 2 cut(s) | 449, 1131 |
| Psp5II | RGGWCCY | 1 cut(s) | 52 |
| Psp6I | CCWGG | 3 cut(s) | 673, 1077, 1115 |
| PspFI | CCCAGC | 2 cut(s) | 48, 226 |
| PspGI | CCWGG | 3 cut(s) | 673, 1077, 1115 |
| PspN4I | GGNNCC | 5 cut(s) | 53, 67, 134, 440, 672 |
| PspPI | GGNCC | 3 cut(s) | 52, 438, 926 |
| PspPPI | RGGWCCY | 1 cut(s) | 52 |
| PsuI | RGATCY | 1 cut(s) | 670 |
| PvuI | CGATCG | 1 cut(s) | 30 |
| RsaI | GTAC | 3 cut(s) | 185, 821, 1112 |
| RsaNI | GTAC | 3 cut(s) | 184, 820, 1111 |
| RseI | CAYNNNNRTG | 2 cut(s) | 566, 905 |
| SaqAI | TTAA | 6 cut(s) | 216, 336, 449, 732, 1059, 1131 |
| SatI | GCNGC | 6 cut(s) | 46, 74, 245, 252, 726, 1323 |
| Sau3AI | GATC | 7 cut(s) | 27, 583, 670, 851, 1185, 1214, 1294 |
| Sau96I | GGNCC | 3 cut(s) | 52, 438, 926 |
| ScaI | AGTACT | 1 cut(s) | 185 |
| SchI | GAGTC | 1 cut(s) | 386 |
| ScrFI | CCNGG | 3 cut(s) | 675, 1079, 1117 |
| SduI | GDGCHC | 3 cut(s) | 162, 269, 513 |
| SfaNI | GCATC | 3 cut(s) | 646, 871, 1270 |
| SfcI | CTRYAG | 2 cut(s) | 355, 1098 |
| SfoI | GGCGCC | 1 cut(s) | 67 |
| SfuI | TTCGAA | 1 cut(s) | 466 |
| SgrAI | CRCCGGYG | 1 cut(s) | 62 |
| SinI | GGWCC | 3 cut(s) | 52, 438, 926 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 566, 905 |
| SmlI | CTYRAG | 3 cut(s) | 204, 335, 1058 |
| SmoI | CTYRAG | 3 cut(s) | 204, 335, 1058 |
| SphI | GCATGC | 1 cut(s) | 350 |
| Sse9I | AATT | 6 cut(s) | 402, 660, 778, 835, 973, 1093 |
| SsiI | CCGC | 7 cut(s) | 79, 101, 154, 165, 245, 282, 1323 |
| SspDI | GGCGCC | 1 cut(s) | 65 |
| SspI | AATATT | 3 cut(s) | 453, 634, 940 |
| SspMI | CTAG | 2 cut(s) | 321, 944 |
| StyD4I | CCNGG | 3 cut(s) | 673, 1077, 1115 |
| TaaI | ACNGT | 5 cut(s) | 132, 260, 548, 805, 824 |
| TaiI | ACGT | 2 cut(s) | 272, 723 |
| TaqI | TCGA | 5 cut(s) | 26, 30, 466, 871, 1188 |
| TaqII | GACCGA | 1 cut(s) | 113 |
| TasI | AATT | 6 cut(s) | 402, 660, 778, 835, 973, 1093 |
| TatI | WGTACW | 2 cut(s) | 183, 819 |
| TauI | GCSGC | 2 cut(s) | 247, 1325 |
| TfiI | GAWTC | 1 cut(s) | 1305 |
| Tru1I | TTAA | 6 cut(s) | 216, 336, 449, 732, 1059, 1131 |
| Tru9I | TTAA | 6 cut(s) | 216, 336, 449, 732, 1059, 1131 |
| TscAI | CASTG | 6 cut(s) | 265, 585, 672, 936, 1026, 1241 |
| TseFI | GTSAC | 2 cut(s) | 535, 576 |
| TseI | GCWGC | 4 cut(s) | 45, 73, 251, 725 |
| Tsp45I | GTSAC | 2 cut(s) | 535, 576 |
| TspDTI | ATGAA | 2 cut(s) | 986, 993 |
| TspGWI | ACGGA | 1 cut(s) | 893 |
| TspRI | CASTG | 6 cut(s) | 265, 585, 672, 936, 1026, 1241 |
| Vha464I | CTTAAG | 2 cut(s) | 335, 1058 |
| VpaK11BI | GGWCC | 3 cut(s) | 52, 438, 926 |
| VspI | ATTAAT | 2 cut(s) | 449, 1131 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 991 |
| XapI | RAATTY | 1 cut(s) | 973 |
| XceI | RCATGY | 4 cut(s) | 350, 686, 920, 1089 |
| XmiI | GTMKAC | 1 cut(s) | 328 |
| XspI | CTAG | 2 cut(s) | 321, 944 |
| ZrmI | AGTACT | 1 cut(s) | 185 |