Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007848

Physical Location & Seq

Genomic Coordinates Reverse (-)

8185322 .. 8187585

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1097200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGGCATTGGAATTTGGTCTTGGGTTATTTGATGATAATCAAAGTCAACAGGAAAGCAACCTGTGCATGCATAGCTTTACGGAGCACACTCTGTTTAACGGTTGTTGTCGTAGGATATGGTGGATGCAAAGCCATTATCGTGTCAGCATCTCAGGATCACACGTTTGGAGCGTAGGAAGTGGGAGATTGTTGAGAAATATTGTTTTCCCTACTATAATTGATGCGATTGCACTGGATCCTGGTGAAAATGTCTTCTTTGCCGGTGGTAGAGATGGCAAGATATACGTTGCTGCACTTAATGCTGGGAGCCCACTGAACAGCAAGTATGGGTTCCATATCATCGATTGTTTCTCGAATCACAGGTCCAGCATTTTTCTGCGAAATATATTGAAGACCTCAAACAAGTCTGGAGCTCTTTGCATTATACTGTACACACACACACACACAATTAATGTGCCTATGTCTAGGCGATCTTCATTCTGCCCGAAAGCAAAGGAAAAGATGATTCCGATGAAATCTGTAATGCAGCAACCAACCACCGGTTCTAGGAATGCATGCAGCTTTGTCTCCCTTTCCATCTCACTTCCTCTCCTGCGTTCATTAGCAGCACTCGCAACAGTCAGGCAGGTAGCATTGTTTGTACACCCTGGAACTGCTAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

9.47

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49180
fragaria_vesca	FvH4_2g34270 FvH4_2g34270
malus_domestica	MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1
prunus_persica	Prupe.1G433800_v2.0.a1
pyrus_communis	pycom08g07920 pycom15g07550
rosa_chinensis	RchiOBHm_Chr6g0308111
rosa_laevigata	RLG00000010666
rosa_multiflora	Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160530
rosa_rugosa	Rorug06G0364100 Rorug06G0364200
rosa_samantha	Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200
rosa_wichuraiana	Rw6G041260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
AclWI	GGATC	3 cut(s)	166, 233, 246
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	2 cut(s)	434, 645
AfiI	CCNNNNNNNGG	2 cut(s)	542, 549
AflIII	ACRYGT	1 cut(s)	163
AgeI	ACCGGT	1 cut(s)	542
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	241, 649
AjuI	GAANNNNNNNTTGG	3 cut(s)	38, 529, 561
AluBI	AGCT	4 cut(s)	78, 416, 564, 666
AluI	AGCT	4 cut(s)	78, 416, 564, 666
Alw21I	GWGCWC	2 cut(s)	90, 418
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	3 cut(s)	166, 233, 246
ApeKI	GCWGC	4 cut(s)	293, 529, 561, 608
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AseI	ATTAAT	1 cut(s)	453
AsiGI	ACCGGT	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	366
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	314, 418
BbsI	GAAGAC	2 cut(s)	247, 401
Bbv12I	GWGCWC	2 cut(s)	90, 418
BbvI	GCAGC	4 cut(s)	280, 541, 573, 620
BccI	CCATC	2 cut(s)	269, 587
BciT130I	CCWGG	2 cut(s)	243, 651
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	3 cut(s)	468, 549, 660
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	4 cut(s)	294, 530, 562, 609
BlsI	GCNGC	4 cut(s)	295, 531, 563, 610
Bme1390I	CCNGG	2 cut(s)	243, 651
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	3 cut(s)	240, 311, 335
BmrFI	CCNGG	2 cut(s)	243, 651
BmsI	GCATC	3 cut(s)	117, 159, 214
BpiI	GAAGAC	2 cut(s)	247, 401
BpmI	CTGGAG	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	649
BsaWI	WCCGGW	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 549
Bse118I	RCCGGY	2 cut(s)	263, 542
Bse1I	ACTGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	243, 651
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	542, 549
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	4 cut(s)	280, 541, 573, 620
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	2 cut(s)	90, 418
BsiSI	CCGG	2 cut(s)	264, 543
BslI	CCNNNNNNNGG	2 cut(s)	542, 549
BsmAI	GTCTC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	559
Bsp1286I	GDGCHC	3 cut(s)	90, 314, 418
Bsp1407I	TGTACA	2 cut(s)	432, 643
Bsp143I	GATC	3 cut(s)	158, 238, 473
BspCNI	CTCAG	1 cut(s)	167
BspDI	ATCGAT	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	240, 311, 335
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	3 cut(s)	166, 233, 246
BsrFI	RCCGGY	2 cut(s)	263, 542
BsrGI	TGTACA	2 cut(s)	432, 643
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	2 cut(s)	263, 542
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	3 cut(s)	158, 238, 473
Bst2UI	CCWGG	2 cut(s)	243, 651
Bst4CI	ACNGT	3 cut(s)	104, 432, 622
BstAPI	GCANNNNNTGC	2 cut(s)	66, 302
BstAUI	TGTACA	2 cut(s)	432, 643
BstC8I	GCNNGC	2 cut(s)	71, 559
BstDEI	CTNAG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	161, 241, 476
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	3 cut(s)	158, 238, 473
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 75, 302, 614
BstNI	CCWGG	2 cut(s)	243, 651
BstNSI	RCATGY	2 cut(s)	73, 561
BstSCI	CCNGG	2 cut(s)	241, 649
BstV1I	GCAGC	4 cut(s)	280, 541, 573, 620
BstV2I	GAAGAC	2 cut(s)	247, 401
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	345
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	233, 314
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	71, 559
Cfr10I	RCCGGY	2 cut(s)	263, 542
Cfr13I	GGNCC	1 cut(s)	366
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	433, 644
CspAI	ACCGGT	1 cut(s)	542
CviAII	CATG	2 cut(s)	70, 558
CviJI	RGCY	6 cut(s)	78, 135, 312, 416, 564, 666
CviKI_1	RGCY	6 cut(s)	78, 135, 312, 416, 564, 666
CviQI	GTAC	2 cut(s)	433, 644
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	3 cut(s)	160, 240, 475
DpnII	GATC	3 cut(s)	158, 238, 473
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	2 cut(s)	314, 418
Eco47I	GGWCC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	241, 649
EcoT22I	ATGCAT	2 cut(s)	75, 559
EcoT38I	GRGCYC	2 cut(s)	314, 418
FaeI	CATG	2 cut(s)	73, 561
FatI	CATG	2 cut(s)	69, 557
Fnu4HI	GCNGC	4 cut(s)	294, 530, 562, 609
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	2 cut(s)	314, 418
Fsp4HI	GCNGC	4 cut(s)	294, 530, 562, 609
FspBI	CTAG	3 cut(s)	468, 549, 660
GluI	GCNGC	4 cut(s)	294, 530, 562, 609
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	432
HapII	CCGG	2 cut(s)	264, 543
Hin1II	CATG	2 cut(s)	73, 561
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	2 cut(s)	358, 508
HpaII	CCGG	2 cut(s)	264, 543
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	50, 435, 646
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	3 cut(s)	156, 355, 411
Hpy8I	GTNNAC	3 cut(s)	50, 435, 646
HpyCH4III	ACNGT	3 cut(s)	104, 432, 622
HpyCH4IV	ACGT	2 cut(s)	165, 288
HpyCH4V	TGCA	9 cut(s)	69, 73, 130, 233, 296, 423, 529, 557, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 75, 302, 614
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	2 cut(s)	165, 288
Hsp92II	CATG	2 cut(s)	73, 561
Kzo9I	GATC	3 cut(s)	158, 238, 473
LmnI	GCTCC	4 cut(s)	85, 171, 309, 413
Lsp1109I	GCAGC	4 cut(s)	280, 541, 573, 620
LweI	GCATC	3 cut(s)	117, 159, 214
MaeI	CTAG	3 cut(s)	468, 549, 660
MaeII	ACGT	2 cut(s)	165, 288
MalI	GATC	3 cut(s)	160, 240, 475
MboI	GATC	3 cut(s)	158, 238, 473
MboII	GAAGA	3 cut(s)	247, 406, 468
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	3 cut(s)	90, 314, 418
MluCI	AATT	3 cut(s)	14, 219, 450
MnlI	CCTC	2 cut(s)	409, 600
Mph1103I	ATGCAT	2 cut(s)	75, 559
MseI	TTAA	3 cut(s)	99, 300, 453
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	2 cut(s)	264, 543
MspR9I	CCNGG	2 cut(s)	243, 651
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	2 cut(s)	243, 651
MwoI	GCNNNNNNNGC	4 cut(s)	66, 75, 302, 614
NdeII	GATC	3 cut(s)	158, 238, 473
NlaIII	CATG	2 cut(s)	73, 561
NlaIV	GGNNCC	3 cut(s)	240, 311, 335
NsiI	ATGCAT	2 cut(s)	75, 559
NspI	RCATGY	2 cut(s)	73, 561
PaeI	GCATGC	2 cut(s)	73, 561
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	2 cut(s)	358, 508
PinAI	ACCGGT	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	295, 531, 563, 610
PshBI	ATTAAT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	241, 649
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	241, 649
PspN4I	GGNNCC	3 cut(s)	240, 311, 335
PspPI	GGNCC	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	434, 645
RsaNI	GTAC	2 cut(s)	433, 644
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	3 cut(s)	99, 300, 453
SatI	GCNGC	4 cut(s)	294, 530, 562, 609
Sau3AI	GATC	3 cut(s)	158, 238, 473
Sau96I	GGNCC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	243, 651
SduI	GDGCHC	3 cut(s)	90, 314, 418
SfaNI	GCATC	3 cut(s)	117, 159, 214
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	2 cut(s)	73, 561
Sse9I	AATT	3 cut(s)	14, 219, 450
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	3 cut(s)	468, 549, 660
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	2 cut(s)	241, 649
TaaI	ACNGT	3 cut(s)	104, 432, 622
TaiI	ACGT	2 cut(s)	168, 291
TaqI	TCGA	2 cut(s)	345, 356
TasI	AATT	3 cut(s)	14, 219, 450
TatI	WGTACW	2 cut(s)	432, 643
TfiI	GAWTC	2 cut(s)	358, 508
Tru1I	TTAA	3 cut(s)	99, 300, 453
Tru9I	TTAA	3 cut(s)	99, 300, 453
TscAI	CASTG	2 cut(s)	240, 321
TseI	GCWGC	4 cut(s)	293, 529, 561, 608
TspDTI	ATGAA	3 cut(s)	468, 530, 591
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	240, 321
VpaK11BI	GGWCC	1 cut(s)	366
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	2 cut(s)	73, 561
XspI	CTAG	3 cut(s)	468, 549, 660
Zsp2I	ATGCAT	2 cut(s)	75, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.