Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007848

Physical Location & Seq

Genomic Coordinates Forward (+)

8404479 .. 8405761

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1100100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGGAGGCCTTAGAGTTTGGTCTCTTTATAGGTGGTAGAGATGGCAAGATATACGTTGCTGCACTTAATACTGAGAGCCTGCTTAACAGCAAGTATGGGTTGCATATCATCGATTGTTTCTCGAATCACAGGTCCAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

48

Amino Acids

5.22

Weight (kDa)

5.51

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49180
fragaria_vesca	FvH4_2g34270 FvH4_2g34270
malus_domestica	MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1
prunus_persica	Prupe.1G433800_v2.0.a1
pyrus_communis	pycom08g07920 pycom15g07550
rosa_chinensis	RchiOBHm_Chr6g0308111
rosa_laevigata	RLG00000010666
rosa_multiflora	Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160530
rosa_rugosa	Rorug06G0364100 Rorug06G0364200
rosa_samantha	Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200
rosa_wichuraiana	Rw6G041260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	59
ArsI	GACNNNNNNTTYG	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	135
BseCI	ATCGAT	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	10, 72
BstMAI	GTCTC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	111
CviJI	RGCY	2 cut(s)	8, 78
CviKI_1	RGCY	2 cut(s)	8, 78
DdeI	CTNAG	2 cut(s)	10, 72
Eco147I	AGGCCT	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	132
FaiI	YATR	4 cut(s)	29, 52, 96, 105
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspEI	CC	9 cut(s)	3, 15, 18, 22, 27, 81, 82, 92, 115
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	62, 103
HpyF3I	CTNAG	2 cut(s)	10, 72
HpySE526I	ACGT	1 cut(s)	54
LpnPI	CCDG	2 cut(s)	92, 115
Lsp1109I	GCAGC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	54
MseI	TTAA	2 cut(s)	66, 84
PceI	AGGCCT	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	66, 84
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	132
SetI	ASST	3 cut(s)	34, 57, 134
SgeI	CNNG	4 cut(s)	58, 91, 103, 133
SinI	GGWCC	1 cut(s)	132
SseBI	AGGCCT	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	111, 122
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	66, 84
Tru9I	TTAA	2 cut(s)	66, 84
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.