Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007848

Physical Location & Seq

Genomic Coordinates Reverse (-)

8152702 .. 8163863

Gene Structure 11162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1097000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATGATCAAAGTCAACAGGAAAGCCATCTGTGCATGTATAACTTTACGGAGCACACTCTGTTTAACGGCTGTTGTCGTAGGATATGGTGGATGCAAAGCCATTATCGTGTCAGCATCTCAGGATCGCACATGTAAGGTTTGGAGTGTAGGAAGTGGGAGATTGTTGAGAAATATTGTTTTCCCTATTATAATTGATGCGATTGCACTGGATCCTGGTGAAAATGTCTTCTTTGCGGGTGGTAGAGATGGCAAGATATACGTTGCTGCACTTAATGCTAGAGCCCACTTAACAGCAAGTATGGGTTCCATATCATCGATTGTTTCTCGAATCACAGGTTTCTCTCTTTTCCTATACGAACCTTTTGATGAACTTACTGATATTCCAGTTTGCAGTTTTATTTGGTATTCAGATGAGTTTTCTTCAGTTAAGACTTCTCTAATTTTTAACTCTGTATTTTTCGTATTTCAAAGTATAACTGCCAAACATTGTTGCACGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

168

Amino Acids

18.22

Weight (kDa)

8.67

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49180
fragaria_vesca	FvH4_2g34270 FvH4_2g34270
malus_domestica	MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1
prunus_persica	Prupe.1G433800_v2.0.a1
pyrus_communis	pycom08g07920 pycom15g07550
rosa_chinensis	RchiOBHm_Chr6g0308111
rosa_laevigata	RLG00000010666
rosa_multiflora	Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160530
rosa_rugosa	Rorug06G0364100 Rorug06G0364200
rosa_samantha	Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200
rosa_wichuraiana	Rw6G041260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	3 cut(s)	132, 206, 219
AcuI	CTGAAG	1 cut(s)	408
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	132, 206, 219
ApeKI	GCWGC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	35, 242
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	6
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	213, 307
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	3 cut(s)	83, 125, 187
BpiI	GAAGAC	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	213, 386
BseBI	CCWGG	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	317
BseGI	GGATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	213, 386
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	252
BshVI	ATCGAT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	56, 286
Bsp143I	GATC	3 cut(s)	6, 124, 211
BspACI	CCGC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	213, 307
BspPI	GGATC	3 cut(s)	132, 206, 219
BsrI	ACTGG	2 cut(s)	213, 386
BssMI	GATC	3 cut(s)	6, 124, 211
Bst2UI	CCWGG	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	9, 127, 214
BstMBI	GATC	3 cut(s)	6, 124, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 275
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	2 cut(s)	39, 135
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	317
BsuTUI	ATCGAT	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	317
CviAII	CATG	2 cut(s)	36, 132
CviJI	RGCY	4 cut(s)	26, 71, 101, 284
CviKI_1	RGCY	4 cut(s)	26, 71, 101, 284
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	3 cut(s)	8, 126, 213
DpnII	GATC	3 cut(s)	6, 124, 211
Eco24I	GRGCYC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	2 cut(s)	39, 135
FatI	CATG	2 cut(s)	35, 131
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	39, 135
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	330
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	2 cut(s)	122, 327
Hpy8I	GTNNAC	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	261, 497
HpyCH4V	TGCA	6 cut(s)	35, 96, 206, 269, 393, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 275
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	261, 497
Hsp92II	CATG	2 cut(s)	39, 135
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	6, 124, 211
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	7 cut(s)	4, 107, 194, 201, 228, 321, 399
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	83, 125, 187
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	261, 497
MalI	GATC	3 cut(s)	8, 126, 213
MboI	GATC	3 cut(s)	6, 124, 211
MboII	GAAGA	2 cut(s)	220, 414
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	56, 286
MluCI	AATT	2 cut(s)	192, 441
MseI	TTAA	6 cut(s)	65, 273, 290, 429, 447, 502
MslI	CAYNNNNRTG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	32, 275
NdeII	GATC	3 cut(s)	6, 124, 211
NlaIII	CATG	2 cut(s)	39, 135
NlaIV	GGNNCC	2 cut(s)	213, 307
NspI	RCATGY	2 cut(s)	39, 135
PciI	ACATGT	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	131
PsiI	TTATAA	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	213, 307
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	6 cut(s)	65, 273, 290, 429, 447, 502
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	6, 124, 211
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	56, 286
SetI	ASST	5 cut(s)	141, 264, 340, 364, 500
SfaNI	GCATC	3 cut(s)	83, 125, 187
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	192, 441
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	2 cut(s)	264, 500
TaqI	TCGA	2 cut(s)	317, 328
TasI	AATT	2 cut(s)	192, 441
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	6 cut(s)	65, 273, 290, 429, 447, 502
Tru9I	TTAA	6 cut(s)	65, 273, 290, 429, 447, 502
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	213
XceI	RCATGY	2 cut(s)	39, 135
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.