Protein ROOT INITIATION DEFECTIVE 3
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49180 |
| fragaria_vesca | FvH4_2g34270 FvH4_2g34270 |
| malus_domestica | MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1 |
| prunus_persica | Prupe.1G433800_v2.0.a1 |
| pyrus_communis | pycom08g07920 pycom15g07550 |
| rosa_chinensis | RchiOBHm_Chr6g0308111 |
| rosa_laevigata | RLG00000010666 |
| rosa_multiflora | Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00160530 |
| rosa_rugosa | Rorug06G0364100 Rorug06G0364200 |
| rosa_samantha | Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200 |
| rosa_wichuraiana | Rw6G041260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 824 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 158, 307 |
| AatII | GACGTC | 1 cut(s) | 8 |
| AccI | GTMKAC | 3 cut(s) | 228, 322, 1083 |
| AccII | CGCG | 2 cut(s) | 459, 547 |
| AccIII | TCCGGA | 1 cut(s) | 144 |
| AciI | CCGC | 9 cut(s) | 29, 50, 132, 457, 459, 547, 732, 811, 903 |
| AclWI | GGATC | 4 cut(s) | 136, 210, 223, 680 |
| AcoI | YGGCCR | 1 cut(s) | 222 |
| AcsI | RAATTY | 2 cut(s) | 603, 1202 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 2 cut(s) | 23, 715 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 745, 971 |
| AflII | CTTAAG | 1 cut(s) | 1279 |
| AflIII | ACRYGT | 2 cut(s) | 651, 762 |
| AgsI | TTSAA | 4 cut(s) | 287, 988, 1201, 1253 |
| AjiI | CACGTC | 2 cut(s) | 238, 765 |
| AjnI | CCWGG | 3 cut(s) | 156, 688, 885 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 718, 750 |
| Alw26I | GTCTC | 1 cut(s) | 661 |
| AlwI | GGATC | 4 cut(s) | 136, 210, 223, 680 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1007 |
| Ama87I | CYCGRG | 1 cut(s) | 487 |
| Aor13HI | TCCGGA | 1 cut(s) | 144 |
| AoxI | GGCC | 4 cut(s) | 176, 222, 747, 839 |
| ApeKI | GCWGC | 8 cut(s) | 469, 472, 502, 779, 782, 1043, 1174, 1177 |
| ApoI | RAATTY | 2 cut(s) | 603, 1202 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 693, 725 |
| AspLEI | GCGC | 1 cut(s) | 55 |
| AspS9I | GGNCC | 2 cut(s) | 26, 147 |
| AsuHPI | GGTGA | 1 cut(s) | 442 |
| AvaI | CYCGRG | 1 cut(s) | 487 |
| AvaII | GGWCC | 2 cut(s) | 26, 147 |
| AxyI | CCTNAGG | 1 cut(s) | 525 |
| BamHI | GGATCC | 1 cut(s) | 215 |
| BbsI | GAAGAC | 2 cut(s) | 79, 654 |
| BbvCI | CCTCAGC | 1 cut(s) | 1047 |
| BbvI | GCAGC | 8 cut(s) | 456, 484, 489, 769, 791, 1030, 1161, 1189 |
| BccI | CCATC | 1 cut(s) | 12 |
| BceAI | ACGGC | 4 cut(s) | 145, 163, 209, 247 |
| BciT130I | CCWGG | 3 cut(s) | 158, 690, 887 |
| BciVI | GTATCC | 1 cut(s) | 202 |
| BcoDI | GTCTC | 1 cut(s) | 661 |
| BfmI | CTRYAG | 4 cut(s) | 470, 1080, 1141, 1175 |
| BfoI | RGCGCY | 1 cut(s) | 56 |
| BfrI | CTTAAG | 1 cut(s) | 1279 |
| BfuI | GTATCC | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 3 cut(s) | 158, 690, 887 |
| Bme18I | GGWCC | 2 cut(s) | 26, 147 |
| BmeT110I | CYCGRG | 1 cut(s) | 487 |
| BmgBI | CACGTC | 2 cut(s) | 238, 765 |
| BmgT120I | GGNCC | 2 cut(s) | 26, 147 |
| BmiI | GGNNCC | 2 cut(s) | 217, 736 |
| BmrFI | CCNGG | 3 cut(s) | 158, 690, 887 |
| BmsI | GCATC | 3 cut(s) | 577, 599, 1260 |
| BpiI | GAAGAC | 2 cut(s) | 79, 654 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 430, 462 |
| BpmI | CTGGAG | 1 cut(s) | 1281 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1047 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 5 cut(s) | 219, 399, 457, 488, 741 |
| BsaWI | WCCGGW | 1 cut(s) | 144 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 658, 688, 1047, 1077 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 745, 971 |
| Bse1I | ACTGG | 3 cut(s) | 500, 1012, 1224 |
| Bse21I | CCTNAGG | 1 cut(s) | 525 |
| BseAI | TCCGGA | 1 cut(s) | 144 |
| BseBI | CCWGG | 3 cut(s) | 158, 690, 887 |
| BseDI | CCNNGG | 5 cut(s) | 219, 399, 457, 488, 741 |
| BseGI | GGATG | 6 cut(s) | 23, 90, 153, 328, 367, 868 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 745, 971 |
| BseMII | CTCAG | 3 cut(s) | 479, 516, 1038 |
| BseNI | ACTGG | 3 cut(s) | 500, 1012, 1224 |
| BseRI | GAGGAG | 2 cut(s) | 96, 1068 |
| BseXI | GCAGC | 8 cut(s) | 456, 484, 489, 769, 791, 1030, 1161, 1189 |
| BsgI | GTGCAG | 1 cut(s) | 1286 |
| Bsh1236I | CGCG | 2 cut(s) | 459, 547 |
| Bsh1285I | CGRYCG | 1 cut(s) | 15 |
| BshFI | GGCC | 4 cut(s) | 178, 224, 749, 841 |
| BsiEI | CGRYCG | 1 cut(s) | 15 |
| BsiHKCI | CYCGRG | 1 cut(s) | 487 |
| BsiSI | CCGG | 2 cut(s) | 145, 724 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 745, 971 |
| BsmAI | GTCTC | 1 cut(s) | 661 |
| BsnI | GGCC | 4 cut(s) | 178, 224, 749, 841 |
| BsoBI | CYCGRG | 1 cut(s) | 487 |
| Bsp13I | TCCGGA | 1 cut(s) | 144 |
| Bsp1407I | TGTACA | 1 cut(s) | 713 |
| Bsp143I | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| Bsp19I | CCATGG | 1 cut(s) | 219 |
| BspACI | CCGC | 9 cut(s) | 29, 50, 132, 457, 459, 547, 732, 811, 903 |
| BspANI | GGCC | 4 cut(s) | 178, 224, 749, 841 |
| BspCNI | CTCAG | 3 cut(s) | 478, 517, 1039 |
| BspEI | TCCGGA | 1 cut(s) | 144 |
| BspFNI | CGCG | 2 cut(s) | 459, 547 |
| BspLI | GGNNCC | 2 cut(s) | 217, 736 |
| BspMAI | CTGCAG | 2 cut(s) | 474, 1179 |
| BspPI | GGATC | 4 cut(s) | 136, 210, 223, 680 |
| BspQI | GCTCTTC | 1 cut(s) | 431 |
| BspTI | CTTAAG | 1 cut(s) | 1279 |
| BsrGI | TGTACA | 1 cut(s) | 713 |
| BsrI | ACTGG | 3 cut(s) | 500, 1012, 1224 |
| BssECI | CCNNGG | 5 cut(s) | 219, 399, 457, 488, 741 |
| BssMI | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 3 cut(s) | 219, 399, 741 |
| Bst2UI | CCWGG | 3 cut(s) | 158, 690, 887 |
| Bst4CI | ACNGT | 6 cut(s) | 298, 306, 320, 672, 755, 794 |
| Bst6I | CTCTTC | 3 cut(s) | 114, 431, 504 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 1 cut(s) | 1279 |
| BstAUI | TGTACA | 1 cut(s) | 713 |
| BstDEI | CTNAG | 7 cut(s) | 410, 465, 525, 768, 1047, 1096, 1287 |
| BstDSI | CCRYGG | 2 cut(s) | 219, 457 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 6 cut(s) | 23, 90, 153, 328, 367, 868 |
| BstFNI | CGCG | 2 cut(s) | 459, 547 |
| BstH2I | RGCGCY | 1 cut(s) | 56 |
| BstHHI | GCGC | 1 cut(s) | 55 |
| BstKTI | GATC | 5 cut(s) | 15, 144, 218, 688, 1295 |
| BstMAI | GTCTC | 1 cut(s) | 661 |
| BstMBI | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| BstMCI | CGRYCG | 1 cut(s) | 15 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 478, 596, 729, 810 |
| BstNI | CCWGG | 3 cut(s) | 158, 690, 887 |
| BstNSI | RCATGY | 1 cut(s) | 655 |
| BstSCI | CCNGG | 3 cut(s) | 156, 688, 885 |
| BstSFI | CTRYAG | 4 cut(s) | 470, 1080, 1141, 1175 |
| BstUI | CGCG | 2 cut(s) | 459, 547 |
| BstV1I | GCAGC | 8 cut(s) | 456, 484, 489, 769, 791, 1030, 1161, 1189 |
| BstV2I | GAAGAC | 2 cut(s) | 79, 654 |
| BstX2I | RGATCY | 2 cut(s) | 215, 685 |
| BstYI | RGATCY | 2 cut(s) | 215, 685 |
| Bsu36I | CCTNAGG | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 202 |
| BsuRI | GGCC | 4 cut(s) | 178, 224, 749, 841 |
| BtgI | CCRYGG | 2 cut(s) | 219, 457 |
| BtrI | CACGTC | 2 cut(s) | 238, 765 |
| BtsCI | GGATG | 6 cut(s) | 23, 90, 153, 328, 367, 868 |
| BtsI | GCAGTG | 1 cut(s) | 585 |
| BtsIMutI | CAGTG | 3 cut(s) | 585, 760, 993 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1007 |
| CfoI | GCGC | 1 cut(s) | 55 |
| Cfr13I | GGNCC | 2 cut(s) | 26, 147 |
| Cfr42I | CCGCGG | 1 cut(s) | 460 |
| CpoI | CGGWCCG | 2 cut(s) | 26, 147 |
| Csp6I | GTAC | 2 cut(s) | 22, 714 |
| CspI | CGGWCCG | 2 cut(s) | 26, 147 |
| CviAII | CATG | 8 cut(s) | 220, 652, 818, 847, 948, 968, 1132, 1275 |
| CviQI | GTAC | 2 cut(s) | 22, 714 |
| DdeI | CTNAG | 7 cut(s) | 410, 465, 525, 768, 1047, 1096, 1287 |
| DpnI | GATC | 5 cut(s) | 14, 143, 217, 687, 1294 |
| DpnII | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 158, 307 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 158, 307 |
| EaeI | YGGCCR | 1 cut(s) | 222 |
| Eam1104I | CTCTTC | 3 cut(s) | 114, 431, 504 |
| EarI | CTCTTC | 3 cut(s) | 114, 431, 504 |
| EciI | GGCGGA | 1 cut(s) | 147 |
| Eco130I | CCWWGG | 3 cut(s) | 219, 399, 741 |
| Eco147I | AGGCCT | 1 cut(s) | 841 |
| Eco47I | GGWCC | 2 cut(s) | 26, 147 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| Eco81I | CCTNAGG | 1 cut(s) | 525 |
| Eco88I | CYCGRG | 1 cut(s) | 487 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoRII | CCWGG | 3 cut(s) | 156, 688, 885 |
| EcoT14I | CCWWGG | 3 cut(s) | 219, 399, 741 |
| EcoT22I | ATGCAT | 1 cut(s) | 592 |
| ErhI | CCWWGG | 3 cut(s) | 219, 399, 741 |
| FaeI | CATG | 8 cut(s) | 223, 655, 821, 850, 951, 971, 1135, 1278 |
| FatI | CATG | 8 cut(s) | 219, 651, 817, 846, 947, 967, 1131, 1274 |
| FblI | GTMKAC | 3 cut(s) | 228, 322, 1083 |
| FokI | GGATG | 6 cut(s) | 30, 77, 140, 315, 374, 875 |
| GlaI | GCGC | 1 cut(s) | 54 |
| GsuI | CTGGAG | 1 cut(s) | 1281 |
| HaeII | RGCGCY | 1 cut(s) | 56 |
| HaeIII | GGCC | 4 cut(s) | 178, 224, 749, 841 |
| HapII | CCGG | 2 cut(s) | 145, 724 |
| HhaI | GCGC | 1 cut(s) | 55 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 8 cut(s) | 223, 655, 821, 850, 951, 971, 1135, 1278 |
| Hin6I | GCGC | 1 cut(s) | 53 |
| HinP1I | GCGC | 1 cut(s) | 53 |
| HinfI | GANTC | 5 cut(s) | 99, 338, 629, 866, 939 |
| HpaII | CCGG | 2 cut(s) | 145, 724 |
| HphI | GGTGA | 1 cut(s) | 442 |
| Hpy166II | GTNNAC | 3 cut(s) | 229, 323, 1084 |
| Hpy188I | TCNGA | 3 cut(s) | 17, 871, 1164 |
| Hpy188III | TCNNGA | 5 cut(s) | 145, 275, 487, 1123, 1298 |
| Hpy8I | GTNNAC | 3 cut(s) | 229, 323, 1084 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 239 |
| HpyAV | CCTTC | 2 cut(s) | 40, 824 |
| HpyCH4III | ACNGT | 6 cut(s) | 298, 306, 320, 672, 755, 794 |
| HpyCH4IV | ACGT | 3 cut(s) | 5, 237, 764 |
| HpyCH4V | TGCA | 9 cut(s) | 472, 573, 590, 779, 878, 1013, 1019, 1177, 1267 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 478, 596, 729, 810 |
| HpyF3I | CTNAG | 7 cut(s) | 410, 465, 525, 768, 1047, 1096, 1287 |
| HpySE526I | ACGT | 3 cut(s) | 5, 237, 764 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 8 cut(s) | 223, 655, 821, 850, 951, 971, 1135, 1278 |
| HspAI | GCGC | 1 cut(s) | 53 |
| Kpn2I | TCCGGA | 1 cut(s) | 144 |
| KspI | CCGCGG | 1 cut(s) | 460 |
| Kzo9I | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| LguI | GCTCTTC | 1 cut(s) | 431 |
| LmnI | GCTCC | 1 cut(s) | 1092 |
| Lsp1109I | GCAGC | 8 cut(s) | 456, 484, 489, 769, 791, 1030, 1161, 1189 |
| LweI | GCATC | 3 cut(s) | 577, 599, 1260 |
| MaeII | ACGT | 3 cut(s) | 5, 237, 764 |
| MaeIII | GTNAC | 3 cut(s) | 246, 298, 638 |
| MalI | GATC | 5 cut(s) | 14, 143, 217, 687, 1294 |
| MboI | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| MboII | GAAGA | 8 cut(s) | 79, 101, 271, 445, 448, 521, 659, 1151 |
| MflI | RGATCY | 2 cut(s) | 215, 685 |
| MluCI | AATT | 7 cut(s) | 119, 482, 565, 603, 982, 1155, 1202 |
| MlyI | GAGTC | 2 cut(s) | 638, 948 |
| MmeI | TCCRAC | 1 cut(s) | 150 |
| Mph1103I | ATGCAT | 1 cut(s) | 592 |
| MroI | TCCGGA | 1 cut(s) | 144 |
| MseI | TTAA | 5 cut(s) | 347, 981, 1154, 1280, 1309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 333 |
| MspA1I | CMGCKG | 5 cut(s) | 79, 459, 469, 782, 1079 |
| MspCI | CTTAAG | 1 cut(s) | 1279 |
| MspI | CCGG | 2 cut(s) | 145, 724 |
| MspR9I | CCNGG | 3 cut(s) | 158, 690, 887 |
| MvaI | CCWGG | 3 cut(s) | 158, 690, 887 |
| MvnI | CGCG | 2 cut(s) | 459, 547 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 478, 596, 729, 810 |
| NcoI | CCATGG | 1 cut(s) | 219 |
| NdeII | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| NlaIII | CATG | 8 cut(s) | 223, 655, 821, 850, 951, 971, 1135, 1278 |
| NlaIV | GGNNCC | 2 cut(s) | 217, 736 |
| NmuCI | GTSAC | 2 cut(s) | 298, 638 |
| NsiI | ATGCAT | 1 cut(s) | 592 |
| NspI | RCATGY | 1 cut(s) | 655 |
| PceI | AGGCCT | 1 cut(s) | 841 |
| PciI | ACATGT | 1 cut(s) | 651 |
| PciSI | GCTCTTC | 1 cut(s) | 431 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 69 |
| PfeI | GAWTC | 3 cut(s) | 99, 338, 866 |
| PflFI | GACNNNGTC | 1 cut(s) | 304 |
| Ple19I | CGATCG | 1 cut(s) | 15 |
| PleI | GAGTC | 2 cut(s) | 637, 947 |
| PpsI | GAGTC | 2 cut(s) | 637, 947 |
| PscI | ACATGT | 1 cut(s) | 651 |
| PsiI | TTATAA | 1 cut(s) | 824 |
| Psp6I | CCWGG | 3 cut(s) | 156, 688, 885 |
| PspGI | CCWGG | 3 cut(s) | 156, 688, 885 |
| PspN4I | GGNNCC | 2 cut(s) | 217, 736 |
| PspPI | GGNCC | 2 cut(s) | 26, 147 |
| PstI | CTGCAG | 2 cut(s) | 474, 1179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1007 |
| PsuI | RGATCY | 2 cut(s) | 215, 685 |
| PsyI | GACNNNGTC | 1 cut(s) | 304 |
| PvuI | CGATCG | 1 cut(s) | 15 |
| PvuII | CAGCTG | 4 cut(s) | 79, 469, 782, 1079 |
| RsaI | GTAC | 2 cut(s) | 23, 715 |
| RsaNI | GTAC | 2 cut(s) | 22, 714 |
| RseI | CAYNNNNRTG | 1 cut(s) | 333 |
| Rsr2I | CGGWCCG | 2 cut(s) | 26, 147 |
| RsrII | CGGWCCG | 2 cut(s) | 26, 147 |
| SacII | CCGCGG | 1 cut(s) | 460 |
| SapI | GCTCTTC | 1 cut(s) | 431 |
| SaqAI | TTAA | 5 cut(s) | 347, 981, 1154, 1280, 1309 |
| Sau3AI | GATC | 5 cut(s) | 12, 141, 215, 685, 1292 |
| Sau96I | GGNCC | 2 cut(s) | 26, 147 |
| SchI | GAGTC | 2 cut(s) | 638, 948 |
| ScrFI | CCNGG | 3 cut(s) | 158, 690, 887 |
| SfaNI | GCATC | 3 cut(s) | 577, 599, 1260 |
| SfcI | CTRYAG | 4 cut(s) | 470, 1080, 1141, 1175 |
| Sfr303I | CCGCGG | 1 cut(s) | 460 |
| SgrBI | CCGCGG | 1 cut(s) | 460 |
| SinI | GGWCC | 2 cut(s) | 26, 147 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 333 |
| SmlI | CTYRAG | 1 cut(s) | 1279 |
| SmoI | CTYRAG | 1 cut(s) | 1279 |
| Sse9I | AATT | 7 cut(s) | 119, 482, 565, 603, 982, 1155, 1202 |
| SseBI | AGGCCT | 1 cut(s) | 841 |
| SsiI | CCGC | 9 cut(s) | 29, 50, 132, 457, 459, 547, 732, 811, 903 |
| StuI | AGGCCT | 1 cut(s) | 841 |
| StyD4I | CCNGG | 3 cut(s) | 156, 688, 885 |
| StyI | CCWWGG | 3 cut(s) | 219, 399, 741 |
| TaaI | ACNGT | 6 cut(s) | 298, 306, 320, 672, 755, 794 |
| TaiI | ACGT | 3 cut(s) | 8, 240, 767 |
| TaqI | TCGA | 4 cut(s) | 36, 44, 382, 806 |
| TaqII | GACCGA | 1 cut(s) | 164 |
| TasI | AATT | 7 cut(s) | 119, 482, 565, 603, 982, 1155, 1202 |
| TatI | WGTACW | 1 cut(s) | 713 |
| TauI | GCSGC | 3 cut(s) | 53, 462, 905 |
| TfiI | GAWTC | 3 cut(s) | 99, 338, 866 |
| Tru1I | TTAA | 5 cut(s) | 347, 981, 1154, 1280, 1309 |
| Tru9I | TTAA | 5 cut(s) | 347, 981, 1154, 1280, 1309 |
| TscAI | CASTG | 3 cut(s) | 585, 760, 1000 |
| TseFI | GTSAC | 2 cut(s) | 298, 638 |
| TseI | GCWGC | 8 cut(s) | 469, 472, 502, 779, 782, 1043, 1174, 1177 |
| Tsp45I | GTSAC | 2 cut(s) | 298, 638 |
| TspDTI | ATGAA | 6 cut(s) | 79, 317, 351, 806, 835, 936 |
| TspGWI | ACGGA | 3 cut(s) | 39, 178, 987 |
| TspRI | CASTG | 3 cut(s) | 585, 760, 1000 |
| Tth111I | GACNNNGTC | 1 cut(s) | 304 |
| Vha464I | CTTAAG | 1 cut(s) | 1279 |
| VpaK11BI | GGWCC | 2 cut(s) | 26, 147 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XapI | RAATTY | 2 cut(s) | 603, 1202 |
| XceI | RCATGY | 1 cut(s) | 655 |
| XmiI | GTMKAC | 3 cut(s) | 228, 322, 1083 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| Zsp2I | ATGCAT | 1 cut(s) | 592 |