Rorug06G0364100

Protein ROOT INITIATION DEFECTIVE 3

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
51172842 .. 51174851
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0364100.1

Sequence Viewer

Length: 1311 bp
ATGACGTCAGCGATCGGATGGTACGGACCGCTAATCGACCTGTCGAAGGCGGCGCTTCACATCGGCGACTTCGTTCAGCTGGTCGTCTTCATCCACCGAATCACTCCTCTTCAGTATAAATTATCCAACGGCGGAGAAGTGATCCGGACCGACATCCAGGTCGGCGACGAAACGAGGCCGTTTTTCTCCGTATCCCTATGGCAAAAGCAAATGGGATCCATGGCCGTCTACGGCGACGTGGTTTTGTTACAAAATGTGAAGATAGTAAAATATCGTGATGTTGTTGAAGCTAAAACCGTGACACAGTCGTCTTTACACCGTCTACTTCATCCTTATGAATCCATTTTAACTAAAGGTGTGGATGAGTTGATAGAGGGGTGTCGAGTTGGGATAGCTACCAAGGAGAAGCTAAGAAAGGTAGTAGAATGGGTGAAGAAGAGCAACACTCGTCAGTTCCGCGGCTCTCAGCTGCAGCAGAGGCAATTCCCGAGGAACTGGAAGCTGCCAGAAGAGAGTAAAAAACCTGAGGATTGTTGTTCAGTTTCGCGGTTATCACATCTAACTAATTCTTGCAAGGCAGTGTTTGATGCATCTGTCGCCGAAATTTTTATGCCACAAGCTGAATGTGAGTCTTGGTGTGACAAGGAAGACATGTTTGTAAGTAGGAGACTGTGTAAAAAAGGAGATCCTGGTTTGGTAAGACATCTTATTTGTACAGGTTGCCGGATATGCGGTTCCCCCTTGGAGGCCAACAGTGAAAACACGTCTAAGCAAAATGCAGCTGCCCTTTACTGTTTGGAAAGCTCGAACCGCCTTCATGTTATAAGCCTCATATACAGGCCTTTCATGTTATATGTATGGGATGATTCGGATTATGCACCACTCCTGGTCAAAAACAAAGCCGCAGAGCTTTTGTTTGGGAACATCAAAGCTGAAAGAGTCTATTCATGCTATAAGGAAAAACCACATGACGGAGAAGTTAATTTCAAAGACACTGACACAGAAACTGGTGCAAGTGCAAAACCAACTTCACAACCTAAAGCTGCTGAGGGAGGAGTTCTGGTTTCTTGCTCATCAGCTGTAGACAACAGGAGCTTAGAATGGGAGGGAATACTTGGTTTCCAGAGGAACATGGACTTCTATAGGATTTGGTTAATTCTTCTGAAAACTATGCTGCAGCAAAGAACGAACAGCCTTTTGAAATTTGTAGTCAATGTAAATGCCAGTTTGGATTGGGAGAATGGGAGGTTTGAAATGGTTTCTGTGCAGATGCCATGCTTAAGAACTAAGCGATCTCCAGACCATATTTAA

Protein Analysis

436

Amino Acids

49.45

Weight (kDa)

8.64

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AasI GACNNNNNNGTC 2 cut(s) 158, 307
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 3 cut(s) 228, 322, 1083
AccII CGCG 2 cut(s) 459, 547
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 9 cut(s) 29, 50, 132, 457, 459, 547, 732, 811, 903
AclWI GGATC 4 cut(s) 136, 210, 223, 680
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 603, 1202
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 23, 715
AfiI CCNNNNNNNGG 3 cut(s) 46, 745, 971
AflII CTTAAG 1 cut(s) 1279
AflIII ACRYGT 2 cut(s) 651, 762
AgsI TTSAA 4 cut(s) 287, 988, 1201, 1253
AjiI CACGTC 2 cut(s) 238, 765
AjnI CCWGG 3 cut(s) 156, 688, 885
AloI GAACNNNNNNTCC 2 cut(s) 718, 750
Alw26I GTCTC 1 cut(s) 661
AlwI GGATC 4 cut(s) 136, 210, 223, 680
AlwNI CAGNNNCTG 1 cut(s) 1007
Ama87I CYCGRG 1 cut(s) 487
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 4 cut(s) 176, 222, 747, 839
ApeKI GCWGC 8 cut(s) 469, 472, 502, 779, 782, 1043, 1174, 1177
ApoI RAATTY 2 cut(s) 603, 1202
ArsI GACNNNNNNTTYG 2 cut(s) 693, 725
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 26, 147
AsuHPI GGTGA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 2 cut(s) 26, 147
AxyI CCTNAGG 1 cut(s) 525
BamHI GGATCC 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 79, 654
BbvCI CCTCAGC 1 cut(s) 1047
BbvI GCAGC 8 cut(s) 456, 484, 489, 769, 791, 1030, 1161, 1189
BccI CCATC 1 cut(s) 12
BceAI ACGGC 4 cut(s) 145, 163, 209, 247
BciT130I CCWGG 3 cut(s) 158, 690, 887
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 661
BfmI CTRYAG 4 cut(s) 470, 1080, 1141, 1175
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 1279
BfuI GTATCC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 158, 690, 887
Bme18I GGWCC 2 cut(s) 26, 147
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 2 cut(s) 238, 765
BmgT120I GGNCC 2 cut(s) 26, 147
BmiI GGNNCC 2 cut(s) 217, 736
BmrFI CCNGG 3 cut(s) 158, 690, 887
BmsI GCATC 3 cut(s) 577, 599, 1260
BpiI GAAGAC 2 cut(s) 79, 654
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpmI CTGGAG 1 cut(s) 1281
Bpu10I CCTNAGC 1 cut(s) 1047
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 219, 399, 457, 488, 741
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 4 cut(s) 658, 688, 1047, 1077
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 745, 971
Bse1I ACTGG 3 cut(s) 500, 1012, 1224
Bse21I CCTNAGG 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 3 cut(s) 158, 690, 887
BseDI CCNNGG 5 cut(s) 219, 399, 457, 488, 741
BseGI GGATG 6 cut(s) 23, 90, 153, 328, 367, 868
BseLI CCNNNNNNNGG 3 cut(s) 46, 745, 971
BseMII CTCAG 3 cut(s) 479, 516, 1038
BseNI ACTGG 3 cut(s) 500, 1012, 1224
BseRI GAGGAG 2 cut(s) 96, 1068
BseXI GCAGC 8 cut(s) 456, 484, 489, 769, 791, 1030, 1161, 1189
BsgI GTGCAG 1 cut(s) 1286
Bsh1236I CGCG 2 cut(s) 459, 547
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 178, 224, 749, 841
BsiEI CGRYCG 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 2 cut(s) 145, 724
BslI CCNNNNNNNGG 3 cut(s) 46, 745, 971
BsmAI GTCTC 1 cut(s) 661
BsnI GGCC 4 cut(s) 178, 224, 749, 841
BsoBI CYCGRG 1 cut(s) 487
Bsp13I TCCGGA 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 713
Bsp143I GATC 5 cut(s) 12, 141, 215, 685, 1292
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 9 cut(s) 29, 50, 132, 457, 459, 547, 732, 811, 903
BspANI GGCC 4 cut(s) 178, 224, 749, 841
BspCNI CTCAG 3 cut(s) 478, 517, 1039
BspEI TCCGGA 1 cut(s) 144
BspFNI CGCG 2 cut(s) 459, 547
BspLI GGNNCC 2 cut(s) 217, 736
BspMAI CTGCAG 2 cut(s) 474, 1179
BspPI GGATC 4 cut(s) 136, 210, 223, 680
BspQI GCTCTTC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 1279
BsrGI TGTACA 1 cut(s) 713
BsrI ACTGG 3 cut(s) 500, 1012, 1224
BssECI CCNNGG 5 cut(s) 219, 399, 457, 488, 741
BssMI GATC 5 cut(s) 12, 141, 215, 685, 1292
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 219, 399, 741
Bst2UI CCWGG 3 cut(s) 158, 690, 887
Bst4CI ACNGT 6 cut(s) 298, 306, 320, 672, 755, 794
Bst6I CTCTTC 3 cut(s) 114, 431, 504
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1279
BstAUI TGTACA 1 cut(s) 713
BstDEI CTNAG 7 cut(s) 410, 465, 525, 768, 1047, 1096, 1287
BstDSI CCRYGG 2 cut(s) 219, 457
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 6 cut(s) 23, 90, 153, 328, 367, 868
BstFNI CGCG 2 cut(s) 459, 547
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 5 cut(s) 15, 144, 218, 688, 1295
BstMAI GTCTC 1 cut(s) 661
BstMBI GATC 5 cut(s) 12, 141, 215, 685, 1292
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 4 cut(s) 478, 596, 729, 810
BstNI CCWGG 3 cut(s) 158, 690, 887
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 3 cut(s) 156, 688, 885
BstSFI CTRYAG 4 cut(s) 470, 1080, 1141, 1175
BstUI CGCG 2 cut(s) 459, 547
BstV1I GCAGC 8 cut(s) 456, 484, 489, 769, 791, 1030, 1161, 1189
BstV2I GAAGAC 2 cut(s) 79, 654
BstX2I RGATCY 2 cut(s) 215, 685
BstYI RGATCY 2 cut(s) 215, 685
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 4 cut(s) 178, 224, 749, 841
BtgI CCRYGG 2 cut(s) 219, 457
BtrI CACGTC 2 cut(s) 238, 765
BtsCI GGATG 6 cut(s) 23, 90, 153, 328, 367, 868
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 585, 760, 993
CaiI CAGNNNCTG 1 cut(s) 1007
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 26, 147
Cfr42I CCGCGG 1 cut(s) 460
CpoI CGGWCCG 2 cut(s) 26, 147
Csp6I GTAC 2 cut(s) 22, 714
CspI CGGWCCG 2 cut(s) 26, 147
CviAII CATG 8 cut(s) 220, 652, 818, 847, 948, 968, 1132, 1275
CviQI GTAC 2 cut(s) 22, 714
DdeI CTNAG 7 cut(s) 410, 465, 525, 768, 1047, 1096, 1287
DpnI GATC 5 cut(s) 14, 143, 217, 687, 1294
DpnII GATC 5 cut(s) 12, 141, 215, 685, 1292
DrdI GACNNNNNNGTC 2 cut(s) 158, 307
DseDI GACNNNNNNGTC 2 cut(s) 158, 307
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 114, 431, 504
EarI CTCTTC 3 cut(s) 114, 431, 504
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 3 cut(s) 219, 399, 741
Eco147I AGGCCT 1 cut(s) 841
Eco47I GGWCC 2 cut(s) 26, 147
Eco57I CTGAAG 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRII CCWGG 3 cut(s) 156, 688, 885
EcoT14I CCWWGG 3 cut(s) 219, 399, 741
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 3 cut(s) 219, 399, 741
FaeI CATG 8 cut(s) 223, 655, 821, 850, 951, 971, 1135, 1278
FatI CATG 8 cut(s) 219, 651, 817, 846, 947, 967, 1131, 1274
FblI GTMKAC 3 cut(s) 228, 322, 1083
FokI GGATG 6 cut(s) 30, 77, 140, 315, 374, 875
GlaI GCGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 1281
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 4 cut(s) 178, 224, 749, 841
HapII CCGG 2 cut(s) 145, 724
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 223, 655, 821, 850, 951, 971, 1135, 1278
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 5 cut(s) 99, 338, 629, 866, 939
HpaII CCGG 2 cut(s) 145, 724
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 3 cut(s) 229, 323, 1084
Hpy188I TCNGA 3 cut(s) 17, 871, 1164
Hpy188III TCNNGA 5 cut(s) 145, 275, 487, 1123, 1298
Hpy8I GTNNAC 3 cut(s) 229, 323, 1084
Hpy99I CGWCG 2 cut(s) 170, 239
HpyAV CCTTC 2 cut(s) 40, 824
HpyCH4III ACNGT 6 cut(s) 298, 306, 320, 672, 755, 794
HpyCH4IV ACGT 3 cut(s) 5, 237, 764
HpyCH4V TGCA 9 cut(s) 472, 573, 590, 779, 878, 1013, 1019, 1177, 1267
HpyF10VI GCNNNNNNNGC 4 cut(s) 478, 596, 729, 810
HpyF3I CTNAG 7 cut(s) 410, 465, 525, 768, 1047, 1096, 1287
HpySE526I ACGT 3 cut(s) 5, 237, 764
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 223, 655, 821, 850, 951, 971, 1135, 1278
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 144
KspI CCGCGG 1 cut(s) 460
Kzo9I GATC 5 cut(s) 12, 141, 215, 685, 1292
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 1092
Lsp1109I GCAGC 8 cut(s) 456, 484, 489, 769, 791, 1030, 1161, 1189
LweI GCATC 3 cut(s) 577, 599, 1260
MaeII ACGT 3 cut(s) 5, 237, 764
MaeIII GTNAC 3 cut(s) 246, 298, 638
MalI GATC 5 cut(s) 14, 143, 217, 687, 1294
MboI GATC 5 cut(s) 12, 141, 215, 685, 1292
MboII GAAGA 8 cut(s) 79, 101, 271, 445, 448, 521, 659, 1151
MflI RGATCY 2 cut(s) 215, 685
MluCI AATT 7 cut(s) 119, 482, 565, 603, 982, 1155, 1202
MlyI GAGTC 2 cut(s) 638, 948
MmeI TCCRAC 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 592
MroI TCCGGA 1 cut(s) 144
MseI TTAA 5 cut(s) 347, 981, 1154, 1280, 1309
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 5 cut(s) 79, 459, 469, 782, 1079
MspCI CTTAAG 1 cut(s) 1279
MspI CCGG 2 cut(s) 145, 724
MspR9I CCNGG 3 cut(s) 158, 690, 887
MvaI CCWGG 3 cut(s) 158, 690, 887
MvnI CGCG 2 cut(s) 459, 547
MwoI GCNNNNNNNGC 4 cut(s) 478, 596, 729, 810
NcoI CCATGG 1 cut(s) 219
NdeII GATC 5 cut(s) 12, 141, 215, 685, 1292
NlaIII CATG 8 cut(s) 223, 655, 821, 850, 951, 971, 1135, 1278
NlaIV GGNNCC 2 cut(s) 217, 736
NmuCI GTSAC 2 cut(s) 298, 638
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 655
PceI AGGCCT 1 cut(s) 841
PciI ACATGT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 3 cut(s) 99, 338, 866
PflFI GACNNNGTC 1 cut(s) 304
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 2 cut(s) 637, 947
PpsI GAGTC 2 cut(s) 637, 947
PscI ACATGT 1 cut(s) 651
PsiI TTATAA 1 cut(s) 824
Psp6I CCWGG 3 cut(s) 156, 688, 885
PspGI CCWGG 3 cut(s) 156, 688, 885
PspN4I GGNNCC 2 cut(s) 217, 736
PspPI GGNCC 2 cut(s) 26, 147
PstI CTGCAG 2 cut(s) 474, 1179
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 2 cut(s) 215, 685
PsyI GACNNNGTC 1 cut(s) 304
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 4 cut(s) 79, 469, 782, 1079
RsaI GTAC 2 cut(s) 23, 715
RsaNI GTAC 2 cut(s) 22, 714
RseI CAYNNNNRTG 1 cut(s) 333
Rsr2I CGGWCCG 2 cut(s) 26, 147
RsrII CGGWCCG 2 cut(s) 26, 147
SacII CCGCGG 1 cut(s) 460
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 5 cut(s) 347, 981, 1154, 1280, 1309
Sau3AI GATC 5 cut(s) 12, 141, 215, 685, 1292
Sau96I GGNCC 2 cut(s) 26, 147
SchI GAGTC 2 cut(s) 638, 948
ScrFI CCNGG 3 cut(s) 158, 690, 887
SfaNI GCATC 3 cut(s) 577, 599, 1260
SfcI CTRYAG 4 cut(s) 470, 1080, 1141, 1175
Sfr303I CCGCGG 1 cut(s) 460
SgrBI CCGCGG 1 cut(s) 460
SinI GGWCC 2 cut(s) 26, 147
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 1279
SmoI CTYRAG 1 cut(s) 1279
Sse9I AATT 7 cut(s) 119, 482, 565, 603, 982, 1155, 1202
SseBI AGGCCT 1 cut(s) 841
SsiI CCGC 9 cut(s) 29, 50, 132, 457, 459, 547, 732, 811, 903
StuI AGGCCT 1 cut(s) 841
StyD4I CCNGG 3 cut(s) 156, 688, 885
StyI CCWWGG 3 cut(s) 219, 399, 741
TaaI ACNGT 6 cut(s) 298, 306, 320, 672, 755, 794
TaiI ACGT 3 cut(s) 8, 240, 767
TaqI TCGA 4 cut(s) 36, 44, 382, 806
TaqII GACCGA 1 cut(s) 164
TasI AATT 7 cut(s) 119, 482, 565, 603, 982, 1155, 1202
TatI WGTACW 1 cut(s) 713
TauI GCSGC 3 cut(s) 53, 462, 905
TfiI GAWTC 3 cut(s) 99, 338, 866
Tru1I TTAA 5 cut(s) 347, 981, 1154, 1280, 1309
Tru9I TTAA 5 cut(s) 347, 981, 1154, 1280, 1309
TscAI CASTG 3 cut(s) 585, 760, 1000
TseFI GTSAC 2 cut(s) 298, 638
TseI GCWGC 8 cut(s) 469, 472, 502, 779, 782, 1043, 1174, 1177
Tsp45I GTSAC 2 cut(s) 298, 638
TspDTI ATGAA 6 cut(s) 79, 317, 351, 806, 835, 936
TspGWI ACGGA 3 cut(s) 39, 178, 987
TspRI CASTG 3 cut(s) 585, 760, 1000
Tth111I GACNNNGTC 1 cut(s) 304
Vha464I CTTAAG 1 cut(s) 1279
VpaK11BI GGWCC 2 cut(s) 26, 147
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 2 cut(s) 603, 1202
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 3 cut(s) 228, 322, 1083
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.