Protein ROOT INITIATION DEFECTIVE 3
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49180 |
| fragaria_vesca | FvH4_2g34270 FvH4_2g34270 |
| malus_domestica | MD08G1093400.v1.1 MD08G1094700.v1.1 MD08G1097000.v1.1 MD08G1097200.v1.1 MD08G1100100.v1.1 MD15G1081000.v1.1 |
| prunus_persica | Prupe.1G433800_v2.0.a1 |
| pyrus_communis | pycom08g07920 pycom15g07550 |
| rosa_chinensis | RchiOBHm_Chr6g0308111 |
| rosa_laevigata | RLG00000010666 |
| rosa_multiflora | Rmu_co8379493.1_g000001 Rmu_sc0024733.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00160530 |
| rosa_rugosa | Rorug06G0364100 Rorug06G0364200 |
| rosa_samantha | Rh6AG472800 Rh6BG484000 Rh6CG488900 Rh6DG475200 |
| rosa_wichuraiana | Rw6G041260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 65 |
| AcoI | YGGCCR | 1 cut(s) | 149 |
| AcyI | GRCGYC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 142 |
| AjiI | CACGTC | 1 cut(s) | 112 |
| AleI | CACNNNNGTG | 1 cut(s) | 166 |
| AluBI | AGCT | 2 cut(s) | 41, 87 |
| AluI | AGCT | 2 cut(s) | 41, 87 |
| AoxI | GGCC | 2 cut(s) | 106, 149 |
| ApeKI | GCWGC | 3 cut(s) | 38, 41, 171 |
| AspS9I | GGNCC | 2 cut(s) | 67, 106 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BalI | TGGCCA | 1 cut(s) | 151 |
| BbvI | GCAGC | 2 cut(s) | 28, 50 |
| BisI | GCNGC | 3 cut(s) | 39, 42, 172 |
| BlsI | GCNGC | 3 cut(s) | 40, 43, 173 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgBI | CACGTC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 106 |
| BmsI | GCATC | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 142 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 142 |
| BseXI | GCAGC | 2 cut(s) | 28, 50 |
| BshFI | GGCC | 2 cut(s) | 108, 151 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 142 |
| BsnI | GGCC | 2 cut(s) | 108, 151 |
| BspACI | CCGC | 1 cut(s) | 65 |
| BspANI | GGCC | 2 cut(s) | 108, 151 |
| BssNI | GRCGYC | 1 cut(s) | 96 |
| BstACI | GRCGYC | 1 cut(s) | 96 |
| BstC8I | GCNNGC | 1 cut(s) | 133 |
| BstV1I | GCAGC | 2 cut(s) | 28, 50 |
| BsuRI | GGCC | 2 cut(s) | 108, 151 |
| BtrI | CACGTC | 1 cut(s) | 112 |
| Cac8I | GCNNGC | 1 cut(s) | 133 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 106 |
| CseI | GACGC | 2 cut(s) | 61, 104 |
| CviAII | CATG | 2 cut(s) | 125, 155 |
| CviJI | RGCY | 5 cut(s) | 41, 87, 108, 151, 174 |
| CviKI_1 | RGCY | 5 cut(s) | 41, 87, 108, 151, 174 |
| EaeI | YGGCCR | 1 cut(s) | 149 |
| EciI | GGCGGA | 1 cut(s) | 80 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| FaeI | CATG | 2 cut(s) | 128, 158 |
| FaiI | YATR | 2 cut(s) | 126, 156 |
| FatI | CATG | 2 cut(s) | 124, 154 |
| Fnu4HI | GCNGC | 3 cut(s) | 39, 42, 172 |
| Fsp4HI | GCNGC | 3 cut(s) | 39, 42, 172 |
| GluI | GCNGC | 3 cut(s) | 39, 42, 172 |
| HaeIII | GGCC | 2 cut(s) | 108, 151 |
| HgaI | GACGC | 2 cut(s) | 61, 104 |
| Hin1I | GRCGYC | 1 cut(s) | 96 |
| Hin1II | CATG | 2 cut(s) | 128, 158 |
| HindIII | AAGCTT | 1 cut(s) | 85 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 1 cut(s) | 23 |
| Hpy99I | CGWCG | 1 cut(s) | 116 |
| HpyAV | CCTTC | 2 cut(s) | 28, 55 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 1 cut(s) | 171 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92I | GRCGYC | 1 cut(s) | 96 |
| Hsp92II | CATG | 2 cut(s) | 128, 158 |
| LpnPI | CCDG | 3 cut(s) | 8, 62, 151 |
| Lsp1109I | GCAGC | 2 cut(s) | 28, 50 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MboII | GAAGA | 2 cut(s) | 11, 16 |
| MlsI | TGGCCA | 1 cut(s) | 151 |
| MluNI | TGGCCA | 1 cut(s) | 151 |
| MnlI | CCTC | 2 cut(s) | 73, 80 |
| Mox20I | TGGCCA | 1 cut(s) | 151 |
| MscI | TGGCCA | 1 cut(s) | 151 |
| MseI | TTAA | 2 cut(s) | 102, 178 |
| MslI | CAYNNNNRTG | 2 cut(s) | 145, 166 |
| Msp20I | TGGCCA | 1 cut(s) | 151 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| NlaIII | CATG | 2 cut(s) | 128, 158 |
| OliI | CACNNNNGTG | 1 cut(s) | 166 |
| PkrI | GCNGC | 3 cut(s) | 40, 43, 173 |
| PspPI | GGNCC | 2 cut(s) | 67, 106 |
| PvuII | CAGCTG | 1 cut(s) | 41 |
| RseI | CAYNNNNRTG | 2 cut(s) | 145, 166 |
| SaqAI | TTAA | 2 cut(s) | 102, 178 |
| SatI | GCNGC | 3 cut(s) | 39, 42, 172 |
| Sau96I | GGNCC | 2 cut(s) | 67, 106 |
| SetI | ASST | 6 cut(s) | 12, 43, 51, 72, 89, 114 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| SgeI | CNNG | 8 cut(s) | 35, 61, 83, 122, 137, 144, 159, 167 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 145, 166 |
| SsiI | CCGC | 1 cut(s) | 65 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 72 |
| Tru1I | TTAA | 2 cut(s) | 102, 178 |
| Tru9I | TTAA | 2 cut(s) | 102, 178 |
| TseI | GCWGC | 3 cut(s) | 38, 41, 171 |
| TspDTI | ATGAA | 2 cut(s) | 17, 129 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |