MD08G1107000.v1.1

Prolyl oligopeptidase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
9389739 .. 9390937
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1107000.v1.1.491

Sequence Viewer

Length: 510 bp
ATGACTGTGGAATCCGGGAAGGTAGATGGCGAACGGCTATGTATTACTGGGGACTCTGCAGGTGGTTATACAGCCTTAGCTGCTCTTGCTTTTAGAGACACTTTCCATGCAGGAGCTTCGTTGTATGATATAGCTGACTTAGCAATGTTGAGGGTAGAAACTCACAAGTTTGAATCTCACTATATCGATAATCTTGTTGGTAGTGAAAAAGATTACCTTGATAGGTCGCCAATCAACTTCGTTGATAAGTTCTCTTGCCCCATAATCTTATTTCAAGGATTGGAAGACAAGTCTGTACCGCCAGCACAAGCTCGTAAGATTTACCATGCTTTGAAGGAAAAGGGTTTGCCTGTTGCTCTTGTGGAGTATGAAGGAGAACAACACGGTTTCCGCAAGGCTGAGAACATTAAGTTCACGTTGGAACAACAAATGGTCTTCTTTGCACGTTTAGTCGGACACTTCAAGGTTGCAGATGAGATTACCCCAATCAGAATTGATAACTACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

5.36

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 4 - 152 1.2e-28 Prolyl oligopeptidase family
BD-FAE PF20434 7 - 111 7.6e-08 BD-FAE
DLH PF01738 7 - 136 3.3e-08 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012367)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 50
AciI CCGC 2 cut(s) 299, 391
AfaI GTAC 1 cut(s) 297
AgsI TTSAA 4 cut(s) 173, 275, 334, 463
AluBI AGCT 4 cut(s) 80, 116, 134, 311
AluI AGCT 4 cut(s) 80, 116, 134, 311
Alw26I GTCTC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 16
BbsI GAAGAC 2 cut(s) 291, 427
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 291, 427
Bpu10I CCTNAGC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 186
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 65
BspACI CCGC 2 cut(s) 299, 391
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 7, 386
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 3 cut(s) 76, 139, 399
BstMAI GTCTC 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 80, 86, 140
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 2 cut(s) 291, 427
Bsu15I ATCGAT 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 186
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 303
ClaI ATCGAT 1 cut(s) 186
Csp6I GTAC 1 cut(s) 296
CviAII CATG 2 cut(s) 107, 326
CviJI RGCY 7 cut(s) 37, 74, 80, 116, 134, 311, 398
CviKI_1 RGCY 7 cut(s) 37, 74, 80, 116, 134, 311, 398
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 3 cut(s) 76, 139, 399
FaeI CATG 2 cut(s) 110, 329
FaiI YATR 9 cut(s) 40, 69, 108, 126, 131, 183, 263, 327, 369
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 106, 325
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 15
Hin1II CATG 2 cut(s) 110, 329
HinfI GANTC 3 cut(s) 11, 53, 173
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 455, 491
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 13, 328, 365
HpyCH4III ACNGT 2 cut(s) 7, 386
HpyCH4IV ACGT 2 cut(s) 416, 445
HpyCH4V TGCA 4 cut(s) 59, 110, 443, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 86, 140
HpyF3I CTNAG 3 cut(s) 76, 139, 399
HpySE526I ACGT 2 cut(s) 416, 445
Hsp92II CATG 2 cut(s) 110, 329
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 28, 33, 45, 96, 315, 363
Lsp1109I GCAGC 1 cut(s) 67
MaeII ACGT 2 cut(s) 416, 445
MboII GAAGA 2 cut(s) 296, 427
MluCI AATT 1 cut(s) 492
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 399, 433
MnlI CCTC 1 cut(s) 144
MseI TTAA 2 cut(s) 408, 508
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 80, 86, 140
NciI CCSGG 1 cut(s) 16
NlaIII CATG 2 cut(s) 110, 329
PaqCI CACCTGC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 11, 173
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 61
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 408, 508
SatI GCNGC 1 cut(s) 81
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 57
Sse9I AATT 1 cut(s) 492
SsiI CCGC 2 cut(s) 299, 391
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 7, 386
TaiI ACGT 2 cut(s) 419, 448
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 492
TfiI GAWTC 2 cut(s) 11, 173
Tru1I TTAA 2 cut(s) 408, 508
Tru9I TTAA 2 cut(s) 408, 508
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.