pycom08g08900

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012367
Physical Location & Seq
Reverse (-)
7191701 .. 7196137
4437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08900.10

Sequence Viewer

Length: 1329 bp
ATGGTGACACTGGAGTTAAGAAAATCACAGCTCCCTGTGGGTCTCGGAAATCCCCCATCACCCCCCCCCCACCCCCGGTTGTCTCCGGCGCCTCCAAGCTACTTGGTGGAACCGCCGTCGATTCCCTTGGCCGCCTCTTATGGCTCGAGTCACGCCCCGACGACTCAGGAACCAAAAGTACTAATAAGTGGAAGTGACTTCTATGCCTTCCCGCGTCTGGACTCCAAAGGCGAACGAATGTCATGGATTGAATGGTCTCATCCTAACATGCCATGGGATAGAGCTCAACTTTGGGTTGTCAGGTTAAGCTTCTTGGTTTTTTCGTGCAGAGAATTCTATAAACGTGTCTGTGTTGCTGGCTGTGACCCCAAAATTATCGAGTCTCTCACTGAACCCAAGTGGTCACCTAAAGGTGATTTTTTGATTTACTTGGTAGAGAAACAATTTGAAGTTCTAGTAGCCGGGATCAAGAATCTTGATTGTTATTCTTCACAATGGAATGTGACCTTAGACGACCACAAATCAGAAGCGGTTGAATTCGAGATTATTTGGCCGTCTTCACCTGATTGTTTAAAATACAATTCCTACTTCAGTTCACCCAAATTCATAGAATTCTCAACAGAAGTTCCTGGCGAATTTGCCTTTGGCTACTTTTATCCACCATCGAATCCGGAGTACATGAAAGCCTCCACTTGTATTGAAAGCCCATGGCTGATGGGAAAATGGGGAGTTGCTGATGTAAATTACTGTTGCAGCTGTGCTAGATATTTGTTGGTAGAACACCCGTCAAGCCATGGTAATTATATATGTTTGGTTATGTATGTGGACTCCGGGAAGGTAGATGGCGAACGGCTATGTATTACTGGGGACTCTGCAGGTGGTTATACAGCCTTAGCTGCTCTTGCTTTTAGAGACACTTTCCATGCAGGAGCTTCGTTGTATGGCATAGCTGACTTAGCAATGTTGAGAGCAGAAACTCACAAGTTTGAATCTCATTATATCGATAATCTTGTTGGTAGTGAAAAAGATTACTTTGATAGGTCGCCAATCAACTTCGTTGATAAGTTCCCCATAATCTTATTTCAAGGATTGGAAGACACGATAGGGAGATTGTGCCATTTTATACTCTTCGTCATATGCGTTTTCATCCCCTCTTTCACTGGTTTGCCTGTTGCTCTTGTGGAGCATGAAGGAGAACAACACGGTCTCCGCAAGGCTGAGAACATTAAGTTCACGTTGGAACAACAAATGGTCTTCTTTGCACGTTTAGGCGGACACTTCAAGTTTGCAGATGAGATTACCCCAATCAGAATTGATAACTACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9

Protein Analysis

443

Amino Acids

49.89

Weight (kDa)

5.36

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36210
fragaria_vesca FvH4_2g34950
malus_domestica MD08G1107000.v1.1 MD08G1107200.v1.1 MD15G1087700.v1.1 MD15G1087800.v1.1
prunus_persica Prupe.1G441500_v2.0.a1
pyrus_communis pycom08g08900 pycom08g08910 pycom15g08240
rosa_chinensis RchiOBHm_Chr6g0307051
rosa_laevigata RLG00000010738
rosa_multiflora Rmu_sc0005634.1_g000006
rosa_roxburghii Rroxscaffold_7G00161200
rosa_rugosa Rorug06G0355500
rosa_samantha Rh6AG467000 Rh6CG482500 Rh6DG468800
rosa_wichuraiana Rw6G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 866
Acc36I ACCTGC 1 cut(s) 866
AccB1I GGYRCC 1 cut(s) 88
AccII CGCG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 6 cut(s) 113, 132, 212, 530, 1210, 1272
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 2 cut(s) 129, 551
AcsI RAATTY 5 cut(s) 332, 536, 602, 611, 635
AcuI CTGAAG 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 180, 677
AfiI CCNNNNNNNGG 2 cut(s) 75, 217
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 7 cut(s) 251, 449, 536, 701, 989, 1085, 1282
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 627, 659
AluBI AGCT 8 cut(s) 31, 99, 284, 309, 756, 896, 932, 950
AluI AGCT 8 cut(s) 31, 99, 284, 309, 756, 896, 932, 950
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 6 cut(s) 47, 87, 261, 387, 906, 1211
AlwI GGATC 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 2 cut(s) 129, 551
ApeKI GCWGC 2 cut(s) 753, 896
ApoI RAATTY 5 cut(s) 332, 536, 602, 611, 635
AspLEI GCGC 1 cut(s) 91
AsuC2I CCSGG 3 cut(s) 76, 463, 832
AsuHPI GGTGA 6 cut(s) 16, 51, 396, 425, 552, 588
AvaI CYCGRG 1 cut(s) 145
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 3 cut(s) 549, 1101, 1246
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 765, 883
BccI CCATC 4 cut(s) 64, 670, 709, 836
BceAI ACGGC 3 cut(s) 100, 538, 866
BcgI CGANNNNNNTGC 2 cut(s) 915, 949
BciT130I CCWGG 1 cut(s) 630
BcnI CCSGG 3 cut(s) 76, 463, 832
BcoDI GTCTC 6 cut(s) 47, 87, 261, 387, 906, 1211
BfaI CTAG 2 cut(s) 455, 762
BfmI CTRYAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 866
BisI GCNGC 3 cut(s) 132, 754, 897
BlsI GCNGC 3 cut(s) 133, 755, 898
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 4 cut(s) 76, 463, 630, 832
BmeT110I CYCGRG 1 cut(s) 145
BmiI GGNNCC 3 cut(s) 90, 111, 171
BmrFI CCNGG 4 cut(s) 76, 463, 630, 832
BmrI ACTGGG 1 cut(s) 873
BmuI ACTGGG 1 cut(s) 873
BpiI GAAGAC 3 cut(s) 549, 1101, 1246
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 892
BpuMI CCSGG 3 cut(s) 76, 463, 832
Bsa29I ATCGAT 1 cut(s) 1002
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 3 cut(s) 47, 261, 1211
BsaJI CCNNGG 5 cut(s) 74, 126, 272, 707, 793
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 217
Bse1I ACTGG 3 cut(s) 15, 868, 1165
Bse3DI GCAATG 1 cut(s) 966
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 5 cut(s) 74, 126, 272, 707, 793
BseGI GGATG 2 cut(s) 259, 1146
BseLI CCNNNNNNNGG 2 cut(s) 75, 217
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 2 cut(s) 179, 1209
BseNI ACTGG 3 cut(s) 15, 868, 1165
BseXI GCAGC 2 cut(s) 765, 883
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 131, 553
BshNI GGYRCC 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 1002
BsiHKAI GWGCWC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 5 cut(s) 76, 86, 462, 671, 831
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 2 cut(s) 75, 217
BsmAI GTCTC 6 cut(s) 47, 87, 261, 387, 906, 1211
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 2 cut(s) 131, 553
Bso31I GGTCTC 3 cut(s) 47, 261, 1211
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 286
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 1 cut(s) 465
Bsp19I CCATGG 3 cut(s) 272, 707, 793
BspACI CCGC 6 cut(s) 113, 132, 212, 530, 1210, 1272
BspANI GGCC 2 cut(s) 131, 553
BspCNI CTCAG 2 cut(s) 178, 1210
BspDI ATCGAT 1 cut(s) 1002
BspEI TCCGGA 1 cut(s) 670
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 90, 111, 171
BspMAI CTGCAG 1 cut(s) 877
BspMI ACCTGC 1 cut(s) 866
BspPI GGATC 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 3 cut(s) 47, 261, 1211
BsrDI GCAATG 1 cut(s) 966
BsrI ACTGG 3 cut(s) 15, 868, 1165
BssECI CCNNGG 5 cut(s) 74, 126, 272, 707, 793
BssMI GATC 1 cut(s) 465
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 4 cut(s) 126, 272, 707, 793
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 749, 1205
Bst6I CTCTTC 1 cut(s) 1133
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 5 cut(s) 165, 508, 892, 955, 1218
BstDSI CCRYGG 3 cut(s) 272, 707, 793
BstEII GGTNACC 1 cut(s) 402
BstF5I GGATG 2 cut(s) 259, 1146
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 6 cut(s) 47, 87, 261, 387, 906, 1211
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 3 cut(s) 896, 902, 956
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 271
BstPI GGTNACC 1 cut(s) 402
BstSCI CCNGG 4 cut(s) 74, 461, 628, 830
BstSFI CTRYAG 1 cut(s) 873
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 765, 883
BstV2I GAAGAC 3 cut(s) 549, 1101, 1246
Bsu15I ATCGAT 1 cut(s) 1002
BsuRI GGCC 2 cut(s) 131, 553
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 3 cut(s) 272, 707, 793
BtsCI GGATG 2 cut(s) 259, 1146
BtsIMutI CAGTG 3 cut(s) 8, 387, 1158
BveI ACCTGC 1 cut(s) 866
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 1002
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 179, 676
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 8 cut(s) 243, 268, 273, 679, 708, 794, 923, 1187
CviQI GTAC 2 cut(s) 179, 676
DdeI CTNAG 5 cut(s) 165, 508, 892, 955, 1218
DinI GGCGCC 1 cut(s) 90
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DraI TTTAAA 1 cut(s) 573
EaeI YGGCCR 2 cut(s) 129, 551
Eam1104I CTCTTC 1 cut(s) 1133
EarI CTCTTC 1 cut(s) 1133
EciI GGCGGA 1 cut(s) 1287
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 4 cut(s) 126, 272, 707, 793
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 3 cut(s) 47, 261, 1211
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 145
Eco91I GGTNACC 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 402
EcoRI GAATTC 3 cut(s) 332, 536, 611
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 4 cut(s) 126, 272, 707, 793
EcoT38I GRGCYC 1 cut(s) 286
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 4 cut(s) 126, 272, 707, 793
FaeI CATG 8 cut(s) 246, 271, 276, 682, 711, 797, 926, 1190
FaqI GGGAC 1 cut(s) 881
FatI CATG 8 cut(s) 242, 267, 272, 678, 707, 793, 922, 1186
FauI CCCGC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 1136
Fnu4HI GCNGC 3 cut(s) 132, 754, 897
FokI GGATG 2 cut(s) 246, 1133
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 132, 754, 897
FspBI CTAG 2 cut(s) 455, 762
GlaI GCGC 1 cut(s) 90
GluI GCNGC 3 cut(s) 132, 754, 897
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 131, 553
HapII CCGG 5 cut(s) 76, 86, 462, 671, 831
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 8 cut(s) 246, 271, 276, 682, 711, 797, 926, 1190
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 307
HpaII CCGG 5 cut(s) 76, 86, 462, 671, 831
HphI GGTGA 6 cut(s) 16, 51, 396, 425, 552, 588
Hpy166II GTNNAC 3 cut(s) 596, 826, 1233
Hpy188I TCNGA 3 cut(s) 47, 526, 1310
Hpy188III TCNNGA 6 cut(s) 167, 218, 469, 476, 541, 671
Hpy8I GTNNAC 3 cut(s) 596, 826, 1233
Hpy99I CGWCG 2 cut(s) 121, 163
HpyAV CCTTC 3 cut(s) 217, 829, 1184
HpyCH4III ACNGT 2 cut(s) 749, 1205
HpyCH4IV ACGT 3 cut(s) 343, 1235, 1264
HpyCH4V TGCA 6 cut(s) 327, 753, 875, 926, 1262, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 896, 902, 956
HpyF3I CTNAG 5 cut(s) 165, 508, 892, 955, 1218
HpySE526I ACGT 3 cut(s) 343, 1235, 1264
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 8 cut(s) 246, 271, 276, 682, 711, 797, 926, 1190
HspAI GCGC 1 cut(s) 89
KasI GGCGCC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 670
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 3 cut(s) 36, 929, 1183
Lsp1109I GCAGC 2 cut(s) 765, 883
MaeI CTAG 2 cut(s) 455, 762
MaeII ACGT 3 cut(s) 343, 1235, 1264
MaeIII GTNAC 6 cut(s) 4, 149, 194, 362, 402, 502
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 5 cut(s) 480, 549, 1106, 1120, 1246
MhlI GDGCHC 1 cut(s) 286
Mly113I GGCGCC 1 cut(s) 89
MlyI GAGTC 6 cut(s) 157, 157, 215, 389, 821, 863
MmeI TCCRAC 1 cut(s) 1218
MnlI CCTC 4 cut(s) 102, 145, 697, 1162
MroI TCCGGA 1 cut(s) 670
MseI TTAA 5 cut(s) 17, 305, 572, 1227, 1327
MspA1I CMGCKG 1 cut(s) 756
MspI CCGG 5 cut(s) 76, 86, 462, 671, 831
MspR9I CCNGG 4 cut(s) 76, 463, 630, 832
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 896, 902, 956
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 3 cut(s) 76, 463, 832
NcoI CCATGG 3 cut(s) 272, 707, 793
NdeI CATATG 1 cut(s) 1136
NdeII GATC 1 cut(s) 465
NlaIII CATG 8 cut(s) 246, 271, 276, 682, 711, 797, 926, 1190
NlaIV GGNNCC 3 cut(s) 90, 111, 171
NmuCI GTSAC 6 cut(s) 4, 149, 194, 362, 402, 502
NspI RCATGY 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 1137
PfeI GAWTC 4 cut(s) 121, 472, 667, 989
PfoI TCCNGGA 1 cut(s) 830
PkrI GCNGC 3 cut(s) 133, 755, 898
PleI GAGTC 6 cut(s) 156, 157, 215, 388, 821, 863
PluTI GGCGCC 1 cut(s) 92
PpsI GAGTC 6 cut(s) 156, 157, 215, 388, 821, 863
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 628
PspEI GGTNACC 1 cut(s) 402
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 3 cut(s) 90, 111, 171
PspXI VCTCGAGB 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstI CTGCAG 1 cut(s) 877
PvuII CAGCTG 1 cut(s) 756
RsaI GTAC 2 cut(s) 180, 677
RsaNI GTAC 2 cut(s) 179, 676
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 5 cut(s) 17, 305, 572, 1227, 1327
SatI GCNGC 3 cut(s) 132, 754, 897
Sau3AI GATC 1 cut(s) 465
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 6 cut(s) 157, 157, 215, 389, 821, 863
ScrFI CCNGG 4 cut(s) 76, 463, 630, 832
SduI GDGCHC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 873
SfoI GGCGCC 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SsiI CCGC 6 cut(s) 113, 132, 212, 530, 1210, 1272
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 2 cut(s) 455, 762
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 4 cut(s) 74, 461, 628, 830
StyI CCWWGG 4 cut(s) 126, 272, 707, 793
TaaI ACNGT 2 cut(s) 749, 1205
TaiI ACGT 3 cut(s) 346, 1238, 1267
TaqI TCGA 6 cut(s) 119, 146, 378, 540, 665, 1002
TatI WGTACW 2 cut(s) 178, 675
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 4 cut(s) 121, 472, 667, 989
Tru1I TTAA 5 cut(s) 17, 305, 572, 1227, 1327
Tru9I TTAA 5 cut(s) 17, 305, 572, 1227, 1327
TscAI CASTG 3 cut(s) 15, 394, 1165
TseFI GTSAC 6 cut(s) 4, 149, 194, 362, 402, 502
TseI GCWGC 2 cut(s) 753, 896
Tsp45I GTSAC 6 cut(s) 4, 149, 194, 362, 402, 502
TspDTI ATGAA 4 cut(s) 595, 695, 1135, 1203
TspRI CASTG 3 cut(s) 15, 394, 1165
XapI RAATTY 5 cut(s) 332, 536, 602, 611, 635
XceI RCATGY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 145
XspI CTAG 2 cut(s) 455, 762
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.