Rorug06G0355500

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012367
Physical Location & Seq
Reverse (-)
50286657 .. 50289099
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355500.1

Sequence Viewer

Length: 951 bp
ATGGAGAAAATCGAGCACACAACAGTGCCCACAAACGGCATCAACATGCACGTAGCCTCAATCGGGTCGGGCCCACCCATCCTCTTCCTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGCTCCTCTCCCTCTCCTCGTTGGGATACCGCTGCATAGCCCCGGACCTCCGCGGCTTCGGTGACACCGACGCGCCGCCGAACGCGTCGTCGTACACGGGTATGCACATAGTCGGAGACCTGATCGGGCTGCTTGACCATCTGGGTATCGAGCAGGTGTTCCTGGTGGCGCATGACTGGGGTGCTGTGGTTGCCTGGTGGTTCTGTTTGTTCAGGCCTGACAGGGTTAAGTGCTTGGTCAACATGAGCGTCGCTTTCAATCCCAGAAATCCCAAGAGGAAGCCTGTTGATGGGTTCAGGGCTTTGTTTGGGGATGATTACTACATTTGCAGGTTTCAGGAACCTGGAGAGGCCGAAGCATATTTTGGTAGTATTGATACTCCCTCAGTAATGAAAAAGTTTCTTACCGGTCGCAGTCCAGCTCCTCCTAAAATACCTAAAGATTTTGGATTTGCAAGTTGGAAAGCTGAAGGACCCTTGCCCCCTTGGCTCTCAGAAGAAGACATTAACTATTTTGCCAGCAAATTCAGCAAGACAGGATTTACGGGTGGATTGAACTATTATCGAGCTATGGACTTAACCTGGGAGCTTATGGCACCGTGGACTGGGGTACAAATCAAAGTACCAGTTAAGTTCATTGTGGGTGATCTGGACATCACCTATCATATCCCAGGTATCAAAGAATATATTCATAATGGTGGCTTCAAGAGTCAGGTACCATTTTTGCAAGAAGTTGTTATAGTTGAAGGAGCAGCCCACTTTATTAACCAAGAGAAGGCAGACGAATGCAGTGCTCATATATACGACTTCATCAAGAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9

Protein Analysis

316

Amino Acids

35.57

Weight (kDa)

6.12

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 25 - 128 2e-26 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 27 - 305 1.7e-18 Alpha/beta hydrolase family
Hydrolase_4 PF12146 27 - 134 2.7e-08 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36210
fragaria_vesca FvH4_2g34950
malus_domestica MD08G1107000.v1.1 MD08G1107200.v1.1 MD15G1087700.v1.1 MD15G1087800.v1.1
prunus_persica Prupe.1G441500_v2.0.a1
pyrus_communis pycom08g08900 pycom08g08910 pycom15g08240
rosa_chinensis RchiOBHm_Chr6g0307051
rosa_laevigata RLG00000010738
rosa_multiflora Rmu_sc0005634.1_g000006
rosa_roxburghii Rroxscaffold_7G00161200
rosa_rugosa Rorug06G0355500
rosa_samantha Rh6AG467000 Rh6CG482500 Rh6DG468800
rosa_wichuraiana Rw6G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 2 cut(s) 271, 447
Acc65I GGTACC 1 cut(s) 841
AccB1I GGYRCC 3 cut(s) 120, 721, 841
AccII CGCG 3 cut(s) 180, 200, 212
AciI CCGC 4 cut(s) 157, 178, 180, 203
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 615
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 5 cut(s) 113, 221, 738, 750, 843
AfiI CCNNNNNNNGG 5 cut(s) 35, 63, 416, 731, 901
AflIII ACRYGT 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 4 cut(s) 385, 682, 832, 872
AjnI CCWGG 5 cut(s) 288, 320, 469, 707, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 6 cut(s) 106, 130, 548, 593, 695, 715
AluI AGCT 6 cut(s) 106, 130, 548, 593, 695, 715
Alw21I GWGCWC 3 cut(s) 18, 108, 922
Alw26I GTCTC 1 cut(s) 237
AoxI GGCC 3 cut(s) 70, 341, 477
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 159, 256, 878
ApoI RAATTY 1 cut(s) 650
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AsiGI ACCGGT 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 813
Asp718I GGTACC 1 cut(s) 841
AspLEI GCGC 3 cut(s) 123, 202, 298
AspS9I GGNCC 4 cut(s) 70, 71, 172, 599
AsuC2I CCSGG 2 cut(s) 101, 170
AsuHPI GGTGA 3 cut(s) 200, 775, 782
AvaII GGWCC 2 cut(s) 172, 599
BaeGI GKGCMC 2 cut(s) 30, 74
BanI GGYRCC 3 cut(s) 120, 721, 841
BanII GRGCYC 2 cut(s) 74, 108
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 3 cut(s) 18, 108, 922
BbvI GCAGC 3 cut(s) 146, 243, 890
BccI CCATC 3 cut(s) 86, 273, 410
BceAI ACGGC 2 cut(s) 52, 109
BcgI CGANNNNNNTGC 2 cut(s) 899, 933
BciT130I CCWGG 5 cut(s) 290, 322, 471, 709, 798
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 2 cut(s) 101, 170
BcoDI GTCTC 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 124
BfuAI ACCTGC 2 cut(s) 271, 447
BfuI GTATCC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 613
BisI GCNGC 5 cut(s) 160, 181, 203, 257, 879
BlsI GCNGC 5 cut(s) 161, 182, 204, 258, 880
Bme1390I CCNGG 7 cut(s) 101, 170, 290, 322, 471, 709, 798
Bme18I GGWCC 2 cut(s) 172, 599
BmgT120I GGNCC 4 cut(s) 70, 71, 172, 599
BmiI GGNNCC 6 cut(s) 72, 122, 468, 601, 723, 843
BmrFI CCNGG 7 cut(s) 101, 170, 290, 322, 471, 709, 798
BmrI ACTGGG 2 cut(s) 313, 741
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 2 cut(s) 313, 741
BpiI GAAGAC 1 cut(s) 633
BpmI CTGGAG 1 cut(s) 492
BpuMI CCSGG 2 cut(s) 101, 170
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 7 cut(s) 91, 168, 178, 611, 708, 725, 796
BsaWI WCCGGW 1 cut(s) 533
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 63, 416, 731, 901
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 3 cut(s) 308, 736, 752
BseBI CCWGG 5 cut(s) 290, 322, 471, 709, 798
BseDI CCNNGG 7 cut(s) 91, 168, 178, 611, 708, 725, 796
BseGI GGATG 2 cut(s) 78, 445
BseLI CCNNNNNNNGG 5 cut(s) 35, 63, 416, 731, 901
BseMII CTCAG 2 cut(s) 525, 633
BseNI ACTGG 3 cut(s) 308, 736, 752
BseRI GAGGAG 3 cut(s) 122, 133, 540
BseSI GKGCMC 2 cut(s) 30, 74
BseXI GCAGC 3 cut(s) 146, 243, 890
Bsh1236I CGCG 3 cut(s) 180, 200, 212
Bsh1285I CGRYCG 1 cut(s) 538
BshFI GGCC 3 cut(s) 72, 343, 479
BshNI GGYRCC 3 cut(s) 120, 721, 841
BshTI ACCGGT 1 cut(s) 533
BsiEI CGRYCG 1 cut(s) 538
BsiHKAI GWGCWC 3 cut(s) 18, 108, 922
BsiSI CCGG 3 cut(s) 101, 170, 534
BslI CCNNNNNNNGG 5 cut(s) 35, 63, 416, 731, 901
BsmAI GTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 3 cut(s) 72, 343, 479
Bso31I GGTCTC 1 cut(s) 237
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 5 cut(s) 18, 30, 74, 108, 922
Bsp143I GATC 2 cut(s) 249, 772
BspACI CCGC 4 cut(s) 157, 178, 180, 203
BspANI GGCC 3 cut(s) 72, 343, 479
BspCNI CTCAG 2 cut(s) 524, 632
BspFNI CGCG 3 cut(s) 180, 200, 212
BspLI GGNNCC 6 cut(s) 72, 122, 468, 601, 723, 843
BspMI ACCTGC 2 cut(s) 271, 447
BspT107I GGYRCC 3 cut(s) 120, 721, 841
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 3 cut(s) 308, 736, 752
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 7 cut(s) 91, 168, 178, 611, 708, 725, 796
BssMI GATC 2 cut(s) 249, 772
BssNI GRCGYC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 611
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 5 cut(s) 290, 322, 471, 709, 798
Bst4CI ACNGT 2 cut(s) 25, 726
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 2 cut(s) 511, 619
BstDSI CCRYGG 3 cut(s) 91, 178, 725
BstF5I GGATG 2 cut(s) 78, 445
BstFNI CGCG 3 cut(s) 180, 200, 212
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 3 cut(s) 123, 202, 298
BstKTI GATC 2 cut(s) 252, 775
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 249, 772
BstMCI CGRYCG 1 cut(s) 538
BstMWI GCNNNNNNNGC 4 cut(s) 127, 317, 613, 654
BstNI CCWGG 5 cut(s) 290, 322, 471, 709, 798
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 7 cut(s) 99, 168, 288, 320, 469, 707, 796
BstSLI GKGCMC 2 cut(s) 30, 74
BstUI CGCG 3 cut(s) 180, 200, 212
BstV1I GCAGC 3 cut(s) 146, 243, 890
BstV2I GAAGAC 1 cut(s) 633
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 72, 343, 479
BtgI CCRYGG 3 cut(s) 91, 178, 725
BtsCI GGATG 2 cut(s) 78, 445
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 2 cut(s) 30, 922
BveI ACCTGC 2 cut(s) 271, 447
Cac8I GCNNGC 1 cut(s) 646
CfoI GCGC 3 cut(s) 123, 202, 298
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 4 cut(s) 70, 71, 172, 599
Cfr42I CCGCGG 1 cut(s) 181
CseI GACGC 3 cut(s) 201, 206, 364
Csp6I GTAC 5 cut(s) 112, 220, 737, 749, 842
CspAI ACCGGT 1 cut(s) 533
CviAII CATG 3 cut(s) 46, 299, 370
CviQI GTAC 5 cut(s) 112, 220, 737, 749, 842
DdeI CTNAG 2 cut(s) 511, 619
DinI GGCGCC 1 cut(s) 122
DpnI GATC 2 cut(s) 251, 774
DpnII GATC 2 cut(s) 249, 772
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 611
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 2 cut(s) 74, 108
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 172, 599
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 5 cut(s) 288, 320, 469, 707, 796
EcoT14I CCWWGG 1 cut(s) 611
EcoT38I GRGCYC 2 cut(s) 74, 108
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 3 cut(s) 49, 302, 373
FatI CATG 3 cut(s) 45, 298, 369
Fnu4HI GCNGC 5 cut(s) 160, 181, 203, 257, 879
FokI GGATG 2 cut(s) 65, 452
FriOI GRGCYC 2 cut(s) 74, 108
Fsp4HI GCNGC 5 cut(s) 160, 181, 203, 257, 879
GlaI GCGC 3 cut(s) 122, 201, 297
GluI GCNGC 5 cut(s) 160, 181, 203, 257, 879
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 3 cut(s) 72, 343, 479
HapII CCGG 3 cut(s) 101, 170, 534
HgaI GACGC 3 cut(s) 201, 206, 364
HhaI GCGC 3 cut(s) 123, 202, 298
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 3 cut(s) 49, 302, 373
Hin6I GCGC 3 cut(s) 121, 200, 296
HinP1I GCGC 3 cut(s) 121, 200, 296
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 835
HpaII CCGG 3 cut(s) 101, 170, 534
HphI GGTGA 3 cut(s) 200, 775, 782
Hpy166II GTNNAC 3 cut(s) 222, 367, 729
Hpy188I TCNGA 3 cut(s) 242, 622, 950
Hpy188III TCNNGA 4 cut(s) 464, 776, 832, 940
Hpy8I GTNNAC 3 cut(s) 222, 367, 729
Hpy99I CGWCG 4 cut(s) 200, 217, 220, 380
HpyAV CCTTC 3 cut(s) 590, 866, 895
HpyCH4III ACNGT 2 cut(s) 25, 726
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 7 cut(s) 49, 162, 232, 456, 581, 853, 915
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 317, 613, 654
HpyF3I CTNAG 2 cut(s) 511, 619
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 3 cut(s) 49, 302, 373
HspAI GCGC 3 cut(s) 121, 200, 296
KasI GGCGCC 1 cut(s) 120
KpnI GGTACC 1 cut(s) 845
KspI CCGCGG 1 cut(s) 181
Kzo9I GATC 2 cut(s) 249, 772
LmnI GCTCC 5 cut(s) 103, 135, 553, 712, 875
Lsp1109I GCAGC 3 cut(s) 146, 243, 890
LweI GCATC 1 cut(s) 48
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 251, 774
MboI GATC 2 cut(s) 249, 772
MboII GAAGA 3 cut(s) 76, 635, 638
MhlI GDGCHC 5 cut(s) 18, 30, 74, 108, 922
MluCI AATT 1 cut(s) 650
MluI ACGCGT 1 cut(s) 210
Mly113I GGCGCC 1 cut(s) 121
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 2 cut(s) 220, 566
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 5 cut(s) 354, 633, 704, 756, 891
MslI CAYNNNNRTG 4 cut(s) 23, 44, 227, 822
MspA1I CMGCKG 2 cut(s) 159, 180
MspI CCGG 3 cut(s) 101, 170, 534
MspR9I CCNGG 7 cut(s) 101, 170, 290, 322, 471, 709, 798
Mva1269I GAATGC 1 cut(s) 917
MvaI CCWGG 5 cut(s) 290, 322, 471, 709, 798
MvnI CGCG 3 cut(s) 180, 200, 212
MwoI GCNNNNNNNGC 4 cut(s) 127, 317, 613, 654
NarI GGCGCC 1 cut(s) 121
NciI CCSGG 2 cut(s) 101, 170
NdeII GATC 2 cut(s) 249, 772
NlaIII CATG 3 cut(s) 49, 302, 373
NlaIV GGNNCC 6 cut(s) 72, 122, 468, 601, 723, 843
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 917
PdmI GAANNNNTTC 1 cut(s) 813
PfoI TCCNGGA 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 533
PkrI GCNGC 5 cut(s) 161, 182, 204, 258, 880
PleI GAGTC 1 cut(s) 843
PluTI GGCGCC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 843
Ppu21I YACGTR 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 599
Psp124BI GAGCTC 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 5 cut(s) 288, 320, 469, 707, 796
PspGI CCWGG 5 cut(s) 288, 320, 469, 707, 796
PspN4I GGNNCC 6 cut(s) 72, 122, 468, 601, 723, 843
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 4 cut(s) 70, 71, 172, 599
PspPPI RGGWCCY 1 cut(s) 599
RsaI GTAC 5 cut(s) 113, 221, 738, 750, 843
RsaNI GTAC 5 cut(s) 112, 220, 737, 749, 842
RseI CAYNNNNRTG 4 cut(s) 23, 44, 227, 822
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 181
SaqAI TTAA 5 cut(s) 354, 633, 704, 756, 891
SatI GCNGC 5 cut(s) 160, 181, 203, 257, 879
Sau3AI GATC 2 cut(s) 249, 772
Sau96I GGNCC 4 cut(s) 70, 71, 172, 599
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 7 cut(s) 101, 170, 290, 322, 471, 709, 798
SduI GDGCHC 5 cut(s) 18, 30, 74, 108, 922
SfaNI GCATC 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 122
Sfr303I CCGCGG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 181
SinI GGWCC 2 cut(s) 172, 599
SmiMI CAYNNNNRTG 4 cut(s) 23, 44, 227, 822
Sse9I AATT 1 cut(s) 650
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 4 cut(s) 157, 178, 180, 203
SspDI GGCGCC 1 cut(s) 120
SstI GAGCTC 1 cut(s) 108
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 7 cut(s) 99, 168, 288, 320, 469, 707, 796
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 2 cut(s) 25, 726
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 12, 276, 691
TasI AATT 1 cut(s) 650
TauI GCSGC 2 cut(s) 183, 205
Tru1I TTAA 5 cut(s) 354, 633, 704, 756, 891
Tru9I TTAA 5 cut(s) 354, 633, 704, 756, 891
TscAI CASTG 2 cut(s) 30, 922
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 3 cut(s) 159, 256, 878
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 533, 751, 806, 925
TspRI CASTG 2 cut(s) 30, 922
VpaK11BI GGWCC 2 cut(s) 172, 599
XapI RAATTY 1 cut(s) 650
XceI RCATGY 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.