Rh6CG482500

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012367
Physical Location & Seq
Forward (+)
64880481 .. 64887589
7109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG482500.1

Sequence Viewer

Length: 1551 bp
ATGAATTCAATCACAACAATTGTAACAGTAAGGCTTGATGGAAAGGACATTCAGGAATCAGAAACACTCGTAGGTGGATGTGACTTCTATGCCTTCCCGCGTCTGGATGCCAAAGGAGAACGACTTGCATGGGTTGAATGGTGCCATCCTAACATGCCATGGGATAGGTCTCAACTTTGGGTTGGGTATATATCTGAGAAAGGGGAAGTCTCAAAACGAGTCTGTGTTTCTGGCTCTGATCCTGCAATTAAGGAATCTCCAATTGAACCCAAGTGGTCCACAAAAGGGGAACTATTTTTCATTACTGACAGAAAAAGTGGGTTTTGGAATCTCTATAAATGGGTTGAGTCTACTAATGAGGTCATATCAGTTTATTCTTTGGATGCTGAATTTTCCAAACCATTATGGGTTTTTGGCTTGAATTCTTATGAATTTATTGAGAGCCATGAACAAAAGAACCTTATTGCTTGCAGCTATAGGAAAAACGGGAGATCATATCTTGGAATTGTGGATGATGTTCAGGGCTCATTATCCCTGCTTAATATTCCTTTCACGGATATTGATAATATTACTTTGGGGATTAATTGCCTATATGTGGAAGGAGCATCAGAAGTTCATCCGTTGTCTGTTGCTAAGGTGACATTAGATGATCAAAAATCAAAAGCAGTTGAATTCAAGATTACTTGGTCTTCTTCACCCGATTGCTTAAAATATGAGTCCTACTTCAGCCTACCTGAATTAATTGAGTTCCCAACAGAAGTTCCTGGTCAAACTGCCTTTGCATACTTTTATCCACCATCAAATCCTAGCTACCAAGCAACTAAGGACGAAAAGCCTCCACTATTACTGAAAAGCCATGGAGGACCCACAGCTGAAGCACGTGGAATTTTAAATCTAAGTGTTCAGTACTGGACTAGTCGTGGTTGGGCATTCGTTGATGTTAACTATGGTGGAAGCACTGGTTATGGCAGAGAATATCGTGAAAGGCTGTTGAAGAAATGGGGAATTGTGGATGTAAATGATTGTTGCAGCTGTGCTAGTTATCTGGTGGAATCTGGAAAGGTAGATGGGAAACGACTTTGTATTACTGGAGGCTCTGCAGGTGGATACACAACCTTAGCTGCACTTGCATTTCGAGACACCTTCAAGGCTGGAGCTTCCTTGTATGGTGTAGCTGACTTAAACATGTTGAGGGCCGAAACTCACAAATTTGAATCTCATTATATGGATAATCTTGTTGGTAGTGATCAGGATTTCTTTGATAGATCACCAATCAACTTTGTTGATAAATTTTCTTGCCCAATAATCTTATTCCAAGGATTGGAAGATAAGGTTGTACCCCCAGATCAAGCTCGTACAATTTACCGTGCTCTGAAGGAAAAGGGCTTGCCAGTTGCTCTCGTGGAGTATGAAGGAGAACAACATGGTTTCCGCAAGGCTGAGAACATTATATTCACTCTGGAACAGCAAATGGTTTTCTTTGCACGTTTAGTTGGACACTTCAAGGTTGCAGATGAGATTACTCCGATCAAAATTGATAACTTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9

Protein Analysis

516

Amino Acids

58.04

Weight (kDa)

5.19

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 300 - 499 1.4e-47 Prolyl oligopeptidase family
BD-FAE PF20434 338 - 458 4.4e-09 BD-FAE
DLH PF01738 347 - 483 2.9e-09 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36210
fragaria_vesca FvH4_2g34950
malus_domestica MD08G1107000.v1.1 MD08G1107200.v1.1 MD15G1087700.v1.1 MD15G1087800.v1.1
prunus_persica Prupe.1G441500_v2.0.a1
pyrus_communis pycom08g08900 pycom08g08910 pycom15g08240
rosa_chinensis RchiOBHm_Chr6g0307051
rosa_laevigata RLG00000010738
rosa_multiflora Rmu_sc0005634.1_g000006
rosa_roxburghii Rroxscaffold_7G00161200
rosa_rugosa Rorug06G0355500
rosa_samantha Rh6AG467000 Rh6CG482500 Rh6DG468800
rosa_wichuraiana Rw6G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1091
Acc36I ACCTGC 1 cut(s) 1091
AccB1I GGYRCC 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 1321
AccI GTMKAC 1 cut(s) 350
AccII CGCG 1 cut(s) 100
AciI CCGC 2 cut(s) 98, 1432
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 8 cut(s) 4, 389, 421, 431, 671, 885, 1208, 1289
AcuI CTGAAG 3 cut(s) 709, 894, 1394
AcvI CACGTG 1 cut(s) 881
AfaI GTAC 3 cut(s) 908, 1338, 1357
AfiI CCNNNNNNNGG 4 cut(s) 103, 285, 595, 1321
AflIII ACRYGT 1 cut(s) 1185
AhlI ACTAGT 1 cut(s) 914
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 8 cut(s) 474, 810, 872, 1032, 1121, 1157, 1175, 1352
AluI AGCT 8 cut(s) 474, 810, 872, 1032, 1121, 1157, 1175, 1352
Alw21I GWGCWC 1 cut(s) 1372
Alw26I GTCTC 3 cut(s) 174, 214, 1131
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 1194
ApeKI GCWGC 3 cut(s) 471, 1029, 1121
ApoI RAATTY 8 cut(s) 4, 389, 421, 431, 671, 885, 1208, 1289
AseI ATTAAT 2 cut(s) 582, 740
AspS9I GGNCC 3 cut(s) 276, 863, 1194
AsuHPI GGTGA 3 cut(s) 649, 687, 1260
AvaII GGWCC 2 cut(s) 276, 863
BanI GGYRCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 527
BauI CACGAG 1 cut(s) 1400
BbrPI CACGTG 1 cut(s) 881
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 1372
BbvI GCAGC 3 cut(s) 483, 1041, 1108
BccI CCATC 4 cut(s) 32, 153, 805, 1061
BciT130I CCWGG 1 cut(s) 765
BciVI GTATCC 1 cut(s) 1100
BclI TGATCA 2 cut(s) 649, 1246
BcoDI GTCTC 3 cut(s) 174, 214, 1131
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 3 cut(s) 807, 915, 1038
BfmI CTRYAG 2 cut(s) 475, 1098
BfuAI ACCTGC 1 cut(s) 1091
BfuI GTATCC 1 cut(s) 1100
BisI GCNGC 3 cut(s) 472, 1030, 1122
BlsI GCNGC 3 cut(s) 473, 1031, 1123
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 1 cut(s) 765
Bme18I GGWCC 2 cut(s) 276, 863
BmgT120I GGNCC 3 cut(s) 276, 863, 1194
BmiI GGNNCC 2 cut(s) 143, 865
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 3 cut(s) 97, 373, 614
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 2 cut(s) 1110, 1173
Bpu10I CCTNAGC 2 cut(s) 633, 1117
BsaAI YACGTR 1 cut(s) 881
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 158, 856, 1315
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 285, 595, 1321
Bse1I ACTGG 4 cut(s) 914, 964, 1093, 1391
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 3 cut(s) 158, 856, 1315
BseGI GGATG 7 cut(s) 83, 112, 145, 388, 517, 616, 1018
BseLI CCNNNNNNNGG 4 cut(s) 103, 285, 595, 1321
BseMII CTCAG 2 cut(s) 186, 1431
BseNI ACTGG 4 cut(s) 914, 964, 1093, 1391
BseXI GCAGC 3 cut(s) 483, 1041, 1108
BsgI GTGCAG 1 cut(s) 1107
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 1196
BshNI GGYRCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 1372
BslI CCNNNNNNNGG 4 cut(s) 103, 285, 595, 1321
BsmAI GTCTC 3 cut(s) 174, 214, 1131
BsmI GAATGC 1 cut(s) 929
BsnI GGCC 1 cut(s) 1196
Bso31I GGTCTC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 527, 1372
Bsp143I GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
Bsp19I CCATGG 2 cut(s) 158, 856
BspACI CCGC 2 cut(s) 98, 1432
BspANI GGCC 1 cut(s) 1196
BspCNI CTCAG 2 cut(s) 187, 1432
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 143, 865
BspMAI CTGCAG 1 cut(s) 1102
BspMI ACCTGC 1 cut(s) 1091
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 174
BsrI ACTGG 4 cut(s) 914, 964, 1093, 1391
BssECI CCNNGG 3 cut(s) 158, 856, 1315
BssMI GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
BssSI CACGAG 1 cut(s) 1400
BssT1I CCWWGG 3 cut(s) 158, 856, 1315
Bst2BI CACGAG 1 cut(s) 1400
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 2 cut(s) 28, 1367
BstBAI YACGTR 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 469, 1388
BstDEI CTNAG 6 cut(s) 195, 633, 822, 896, 1117, 1440
BstDSI CCRYGG 2 cut(s) 158, 856
BstF5I GGATG 7 cut(s) 83, 112, 145, 388, 517, 616, 1018
BstFNI CGCG 1 cut(s) 100
BstKTI GATC 7 cut(s) 241, 494, 652, 1249, 1268, 1348, 1530
BstMAI GTCTC 3 cut(s) 174, 214, 1131
BstMBI GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
BstMWI GCNNNNNNNGC 1 cut(s) 1127
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 2 cut(s) 157, 1189
BstSCI CCNGG 1 cut(s) 763
BstSFI CTRYAG 2 cut(s) 475, 1098
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 3 cut(s) 483, 1041, 1108
BstV2I GAAGAC 1 cut(s) 681
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 1 cut(s) 1196
BtgI CCRYGG 2 cut(s) 158, 856
BtsCI GGATG 7 cut(s) 83, 112, 145, 388, 517, 616, 1018
BtsIMutI CAGTG 1 cut(s) 957
BveI ACCTGC 1 cut(s) 1091
Cac8I GCNNGC 2 cut(s) 469, 1388
Cfr13I GGNCC 3 cut(s) 276, 863, 1194
CseI GACGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 907, 1337, 1356
CviAII CATG 7 cut(s) 129, 154, 159, 446, 857, 1186, 1424
CviQI GTAC 3 cut(s) 907, 1337, 1356
DdeI CTNAG 6 cut(s) 195, 633, 822, 896, 1117, 1440
DpnI GATC 7 cut(s) 240, 493, 651, 1248, 1267, 1347, 1529
DpnII GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
DraI TTTAAA 1 cut(s) 891
Eco130I CCWWGG 3 cut(s) 158, 856, 1315
Eco24I GRGCYC 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 276, 863
Eco57I CTGAAG 3 cut(s) 709, 894, 1394
Eco72I CACGTG 1 cut(s) 881
EcoO109I RGGNCCY 1 cut(s) 863
EcoRI GAATTC 3 cut(s) 4, 421, 671
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 3 cut(s) 158, 856, 1315
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 3 cut(s) 158, 856, 1315
FaeI CATG 7 cut(s) 132, 157, 162, 449, 860, 1189, 1427
FatI CATG 7 cut(s) 128, 153, 158, 445, 856, 1185, 1423
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 2 cut(s) 649, 1246
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 3 cut(s) 472, 1030, 1122
FokI GGATG 7 cut(s) 90, 119, 132, 395, 524, 603, 1025
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 3 cut(s) 472, 1030, 1122
FspBI CTAG 3 cut(s) 807, 915, 1038
GluI GCNGC 3 cut(s) 472, 1030, 1122
GsuI CTGGAG 2 cut(s) 1110, 1173
HaeIII GGCC 1 cut(s) 1196
HgaI GACGC 1 cut(s) 89
Hin1II CATG 7 cut(s) 132, 157, 162, 449, 860, 1189, 1427
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 8 cut(s) 56, 219, 254, 328, 347, 716, 1052, 1214
HpaI GTTAAC 1 cut(s) 943
HphI GGTGA 3 cut(s) 649, 687, 1260
Hpy166II GTNNAC 3 cut(s) 279, 351, 943
Hpy188I TCNGA 6 cut(s) 61, 196, 238, 610, 1374, 1527
Hpy188III TCNNGA 8 cut(s) 53, 104, 676, 980, 1056, 1136, 1250, 1460
Hpy8I GTNNAC 3 cut(s) 279, 351, 943
HpyAV CCTTC 5 cut(s) 103, 593, 1153, 1369, 1406
HpyCH4III ACNGT 2 cut(s) 28, 1367
HpyCH4IV ACGT 2 cut(s) 880, 1486
HpyF10VI GCNNNNNNNGC 1 cut(s) 1127
HpyF3I CTNAG 6 cut(s) 195, 633, 822, 896, 1117, 1440
HpySE526I ACGT 2 cut(s) 880, 1486
Hsp92II CATG 7 cut(s) 132, 157, 162, 449, 860, 1189, 1427
Ksp22I TGATCA 2 cut(s) 649, 1246
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
LmnI GCTCC 2 cut(s) 602, 1154
Lsp1109I GCAGC 3 cut(s) 483, 1041, 1108
LweI GCATC 3 cut(s) 97, 373, 614
MaeI CTAG 3 cut(s) 807, 915, 1038
MaeII ACGT 2 cut(s) 880, 1486
MaeIII GTNAC 3 cut(s) 22, 80, 637
MalI GATC 7 cut(s) 240, 493, 651, 1248, 1267, 1347, 1529
MboI GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
MboII GAAGA 4 cut(s) 681, 684, 1006, 1337
MfeI CAATTG 2 cut(s) 18, 261
MhlI GDGCHC 2 cut(s) 527, 1372
MlyI GAGTC 3 cut(s) 228, 356, 725
MmeI TCCRAC 1 cut(s) 1474
MnlI CCTC 5 cut(s) 352, 846, 854, 1085, 1185
MseI TTAA 9 cut(s) 249, 540, 582, 707, 740, 890, 942, 1181, 1549
MspA1I CMGCKG 2 cut(s) 872, 1032
MspR9I CCNGG 1 cut(s) 765
MunI CAATTG 2 cut(s) 18, 261
Mva1269I GAATGC 1 cut(s) 929
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 1127
NcoI CCATGG 2 cut(s) 158, 856
NdeII GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
NlaIII CATG 7 cut(s) 132, 157, 162, 449, 860, 1189, 1427
NlaIV GGNNCC 2 cut(s) 143, 865
NmuCI GTSAC 2 cut(s) 80, 637
NspI RCATGY 2 cut(s) 157, 1189
PaqCI CACCTGC 1 cut(s) 1091
PciI ACATGT 1 cut(s) 1185
PctI GAATGC 1 cut(s) 929
PfeI GAWTC 5 cut(s) 56, 254, 328, 1052, 1214
PflMI CCANNNNNTGG 1 cut(s) 1321
PkrI GCNGC 3 cut(s) 473, 1031, 1123
PleI GAGTC 3 cut(s) 227, 355, 724
PmaCI CACGTG 1 cut(s) 881
PmlI CACGTG 1 cut(s) 881
PpsI GAGTC 3 cut(s) 227, 355, 724
Ppu21I YACGTR 1 cut(s) 881
PpuMI RGGWCCY 1 cut(s) 863
PscI ACATGT 1 cut(s) 1185
PshBI ATTAAT 2 cut(s) 582, 740
Psp5II RGGWCCY 1 cut(s) 863
Psp6I CCWGG 1 cut(s) 763
PspCI CACGTG 1 cut(s) 881
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 2 cut(s) 143, 865
PspPI GGNCC 3 cut(s) 276, 863, 1194
PspPPI RGGWCCY 1 cut(s) 863
PstI CTGCAG 1 cut(s) 1102
PvuII CAGCTG 2 cut(s) 872, 1032
RsaI GTAC 3 cut(s) 908, 1338, 1357
RsaNI GTAC 3 cut(s) 907, 1337, 1356
SaqAI TTAA 9 cut(s) 249, 540, 582, 707, 740, 890, 942, 1181, 1549
SatI GCNGC 3 cut(s) 472, 1030, 1122
Sau3AI GATC 7 cut(s) 238, 491, 649, 1246, 1265, 1345, 1527
Sau96I GGNCC 3 cut(s) 276, 863, 1194
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 3 cut(s) 228, 356, 725
ScrFI CCNGG 1 cut(s) 765
SduI GDGCHC 2 cut(s) 527, 1372
SfaNI GCATC 3 cut(s) 97, 373, 614
SfcI CTRYAG 2 cut(s) 475, 1098
SinI GGWCC 2 cut(s) 276, 863
SpeI ACTAGT 1 cut(s) 914
SsiI CCGC 2 cut(s) 98, 1432
SspI AATATT 2 cut(s) 544, 568
SspMI CTAG 3 cut(s) 807, 915, 1038
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 3 cut(s) 158, 856, 1315
TaaI ACNGT 2 cut(s) 28, 1367
TaiI ACGT 2 cut(s) 883, 1489
TaqI TCGA 1 cut(s) 1135
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 5 cut(s) 56, 254, 328, 1052, 1214
Tru1I TTAA 9 cut(s) 249, 540, 582, 707, 740, 890, 942, 1181, 1549
Tru9I TTAA 9 cut(s) 249, 540, 582, 707, 740, 890, 942, 1181, 1549
TscAI CASTG 1 cut(s) 964
TseFI GTSAC 2 cut(s) 80, 637
TseI GCWGC 3 cut(s) 471, 1029, 1121
Tsp45I GTSAC 2 cut(s) 80, 637
TspDTI ATGAA 6 cut(s) 17, 289, 444, 462, 605, 1425
TspGWI ACGGA 2 cut(s) 569, 609
TspRI CASTG 1 cut(s) 964
Van91I CCANNNNNTGG 1 cut(s) 1321
VpaK11BI GGWCC 2 cut(s) 276, 863
VspI ATTAAT 2 cut(s) 582, 740
XapI RAATTY 8 cut(s) 4, 389, 421, 431, 671, 885, 1208, 1289
XceI RCATGY 2 cut(s) 157, 1189
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 3 cut(s) 807, 915, 1038
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.