Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Forward (+)

17189120 .. 17189371

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1154700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATGAAATCAAATTCTTGTGTTACCAAAATATGTTCTAAATTATATATTTTTATCTTGTGGACCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTTGGGGCTTATGTAGCCCATGCTGAATTAATCATATTATGGACCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCAAAGAAGCCTATGTATGAACAAGGATTAACTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009539 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

84

Amino Acids

9.25

Weight (kDa)

9.34

Isoelectric Point (pI)

13.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	20 - 83	6.7e-23	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	63, 144
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	63, 144
BcnI	CCSGG	1 cut(s)	67
BfaI	CTAG	2 cut(s)	230, 239
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	2 cut(s)	63, 144
BmgT120I	GGNCC	2 cut(s)	63, 144
BmrFI	CCNGG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	67
BsaWI	WCCGGW	2 cut(s)	92, 146
Bse3DI	GCAATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	66, 93, 147
BsmI	GAATGC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	63, 144
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	5 cut(s)	110, 119, 173, 193, 233
CviKI_1	RGCY	5 cut(s)	110, 119, 173, 193, 233
CviQI	GTAC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	63, 144
FaeI	CATG	1 cut(s)	125
FaiI	YATR	9 cut(s)	34, 46, 48, 114, 123, 137, 142, 197, 201
FatI	CATG	1 cut(s)	121
FspBI	CTAG	2 cut(s)	230, 239
HapII	CCGG	3 cut(s)	66, 93, 147
Hin1II	CATG	1 cut(s)	125
HpaII	CCGG	3 cut(s)	66, 93, 147
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	63, 98
Hpy8I	GTNNAC	2 cut(s)	63, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	3 cut(s)	79, 106, 160
MaeI	CTAG	2 cut(s)	230, 239
MaeIII	GTNAC	1 cut(s)	22
MluCI	AATT	4 cut(s)	13, 41, 85, 128
MnlI	CCTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	131, 212
MspI	CCGG	3 cut(s)	66, 93, 147
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	67
NlaIII	CATG	1 cut(s)	125
PctI	GAATGC	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	131
PspPI	GGNCC	2 cut(s)	63, 144
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	131, 212
Sau96I	GGNCC	2 cut(s)	63, 144
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	4 cut(s)	162, 231, 235, 244
SinI	GGWCC	2 cut(s)	63, 144
Sse9I	AATT	4 cut(s)	13, 41, 85, 128
SspMI	CTAG	2 cut(s)	230, 239
StyD4I	CCNGG	1 cut(s)	65
TasI	AATT	4 cut(s)	13, 41, 85, 128
Tru1I	TTAA	2 cut(s)	131, 212
Tru9I	TTAA	2 cut(s)	131, 212
TspDTI	ATGAA	3 cut(s)	20, 170, 216
VpaK11BI	GGWCC	2 cut(s)	63, 144
VspI	ATTAAT	1 cut(s)	131
XapI	RAATTY	1 cut(s)	13
XspI	CTAG	2 cut(s)	230, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.