RLG00000000320

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004028
Physical Location & Seq
Forward (+)
555494 .. 557516
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000320

Sequence Viewer

Length: 399 bp
ATGCGCTCTCCAACTGGGGAAGTTATTTTTGGAGGAGAAACTATGCGTTTCTGGGATCTGCGTGCCCCCTGGTTAGAACCTCTAAGGGGTCCTAATGGTTTGGACTTGAGTAGGCTGAAAAAAGACATACAGCCTTGGCAAGAGCGGCGTTCTGCGGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCTGCCGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTGA

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

8.21

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 1 - 128 1.2e-33 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 2 cut(s) 145, 155
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 344, 368
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 2 cut(s) 209, 329
AluI AGCT 2 cut(s) 209, 329
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 326, 329, 332
ApoI RAATTY 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 322
BauI CACGAG 1 cut(s) 321
BbvI GCAGC 3 cut(s) 316, 319, 338
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 243, 275
BisI GCNGC 4 cut(s) 146, 327, 330, 333
BlsI GCNGC 4 cut(s) 147, 328, 331, 334
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 68, 134, 195
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 68, 134, 195
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 2 cut(s) 48, 378
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 3 cut(s) 316, 319, 338
BsgI GTGCAG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 67, 322
Bsp143I GATC 3 cut(s) 55, 216, 355
BspACI CCGC 2 cut(s) 145, 155
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 68, 134, 195
BssMI GATC 3 cut(s) 55, 216, 355
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 63, 309
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 58, 219, 358
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 3 cut(s) 55, 216, 355
BstMWI GCNNNNNNNGC 4 cut(s) 145, 317, 326, 332
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 316, 319, 338
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 63, 309
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 3 cut(s) 170, 308, 382
CviJI RGCY 5 cut(s) 115, 133, 209, 320, 329
CviKI_1 RGCY 5 cut(s) 115, 133, 209, 320, 329
DdeI CTNAG 1 cut(s) 83
DpnI GATC 3 cut(s) 57, 218, 357
DpnII GATC 3 cut(s) 55, 216, 355
DraI TTTAAA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 3 cut(s) 173, 311, 385
FaiI YATR 9 cut(s) 44, 128, 162, 164, 171, 234, 304, 309, 383
FatI CATG 3 cut(s) 169, 307, 381
Fnu4HI GCNGC 4 cut(s) 146, 327, 330, 333
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 4 cut(s) 146, 327, 330, 333
FspBI CTAG 2 cut(s) 243, 275
GlaI GCGC 1 cut(s) 5
GluI GCNGC 4 cut(s) 146, 327, 330, 333
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 173, 311, 385
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 3 cut(s) 166, 279, 385
HpaII CCGG 1 cut(s) 336
Hpy188III TCNNGA 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 224, 311, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 317, 326, 332
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 3 cut(s) 173, 311, 385
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 55, 216, 355
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 37, 55, 82, 297, 349, 384
Lsp1109I GCAGC 3 cut(s) 316, 319, 338
MaeI CTAG 2 cut(s) 243, 275
MalI GATC 3 cut(s) 57, 218, 357
MbiI CCGCTC 1 cut(s) 145
MboI GATC 3 cut(s) 55, 216, 355
MboII GAAGA 1 cut(s) 274
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 67, 322
MluCI AATT 3 cut(s) 190, 229, 351
MlyI GAGTC 2 cut(s) 160, 379
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 3 cut(s) 26, 90, 399
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 188, 393
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 4 cut(s) 145, 317, 326, 332
NdeII GATC 3 cut(s) 55, 216, 355
NlaIII CATG 3 cut(s) 173, 311, 385
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 311
PaeI GCATGC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 4 cut(s) 147, 328, 331, 334
PleI GAGTC 2 cut(s) 160, 379
PpsI GAGTC 2 cut(s) 160, 379
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 188, 393
SatI GCNGC 4 cut(s) 146, 327, 330, 333
Sau3AI GATC 3 cut(s) 55, 216, 355
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 160, 379
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 2 cut(s) 67, 322
SetI ASST 6 cut(s) 82, 184, 211, 298, 331, 373
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SphI GCATGC 1 cut(s) 311
Sse9I AATT 3 cut(s) 190, 229, 351
SsiI CCGC 2 cut(s) 145, 155
SspMI CTAG 2 cut(s) 243, 275
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 134
TasI AATT 3 cut(s) 190, 229, 351
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 2 cut(s) 188, 393
Tru9I TTAA 2 cut(s) 188, 393
TseI GCWGC 3 cut(s) 326, 329, 332
TspGWI ACGGA 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 243, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.