Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Reverse (-)

39227783 .. 39229339

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCACCCCGAAAACAAGAGCATCTACGCGTTTCACTGCATTCCAACTCTGGCAACAGTTACCAAAGGAGACTCAGAACCTACAGAAAAGGCCTGCATCATTTTTCACAATAAACAATTAAAACACAAAGCACAAATTTTGACCCAGATTGGTATGACATGTAAACTAACTACCAATACTGGTTTCATGCTACGTCAATTTGAACTTCTCGATCTGTTCAATTGCGACCTTATAATGCAATTGATCAAAGAGCAGATTTTGGAGAGATTTTTCATCGACGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCCGCTGCCAGGTTTCATTCATTGGTGGGATCGACAGATGTAGTGGCTGTTGAAATTGGCAACCTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.39

Weight (kDa)

6.95

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	2 cut(s)	27, 158
AgsI	TTSAA	3 cut(s)	203, 220, 365
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	315, 318
BlsI	GCNGC	2 cut(s)	316, 319
Bme1390I	CCNGG	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	30, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	211, 243, 300, 341
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	4 cut(s)	211, 243, 300, 341
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	94, 312
BstDEI	CTNAG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	4 cut(s)	214, 246, 303, 344
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	211, 243, 300, 341
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	94, 312
CviAII	CATG	2 cut(s)	159, 187
CviJI	RGCY	4 cut(s)	92, 287, 314, 359
CviKI_1	RGCY	4 cut(s)	92, 287, 314, 359
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	4 cut(s)	213, 245, 302, 343
DpnII	GATC	4 cut(s)	211, 243, 300, 341
Eco147I	AGGCCT	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	162, 190
FaiI	YATR	4 cut(s)	155, 160, 188, 233
FatI	CATG	2 cut(s)	158, 186
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	315, 318
Fsp4HI	GCNGC	2 cut(s)	315, 318
GluI	GCNGC	2 cut(s)	315, 318
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	162, 190
HinfI	GANTC	2 cut(s)	71, 293
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	193, 279
HpyCH4V	TGCA	4 cut(s)	4, 39, 96, 238
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	2 cut(s)	193, 279
Hsp92II	CATG	2 cut(s)	162, 190
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	211, 243, 300, 341
LpnPI	CCDG	7 cut(s)	35, 106, 158, 165, 273, 307, 334
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	30, 105
MaeII	ACGT	2 cut(s)	193, 279
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	213, 245, 302, 343
MboI	GATC	4 cut(s)	211, 243, 300, 341
MfeI	CAATTG	2 cut(s)	220, 239
MluCI	AATT	6 cut(s)	116, 135, 197, 220, 239, 366
MluI	ACGCGT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	68
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	322
MunI	CAATTG	2 cut(s)	220, 239
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	29
NdeII	GATC	4 cut(s)	211, 243, 300, 341
NlaIII	CATG	2 cut(s)	162, 190
NspI	RCATGY	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	92
PciI	ACATGT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	316, 319
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	315, 318
Sau3AI	GATC	4 cut(s)	211, 243, 300, 341
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	6 cut(s)	82, 196, 231, 282, 326, 378
SfaNI	GCATC	2 cut(s)	30, 105
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	6 cut(s)	116, 135, 197, 220, 239, 366
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	196, 282
TaqI	TCGA	3 cut(s)	210, 276, 344
TasI	AATT	6 cut(s)	116, 135, 197, 220, 239, 366
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	175, 262, 317, 321
TspRI	CASTG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.