Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Reverse (-)

29602807 .. 29603142

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1235700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGACTATAGCCGTTGGTAACTTTACCAAAAATGAAAATGATTTATTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAATCTTTGTAACTTCATGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Photo_RC

Protein Analysis

112

Amino Acids

12.69

Weight (kDa)

5.03

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Photo_RC	PF00124	29 - 94	1.1e-06	Photosynthetic reaction centre protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	6, 332
BfrI	CTTAAG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	77, 285
BmsI	GCATC	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	245
BspACI	CCGC	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	77, 285
BspTI	CTTAAG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	68
BssNAI	GTATAC	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSFI	CTRYAG	2 cut(s)	6, 332
BstZ17I	GTATAC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	4 cut(s)	11, 105, 213, 248
CviKI_1	RGCY	4 cut(s)	11, 105, 213, 248
CviQI	GTAC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	284
FaeI	CATG	1 cut(s)	177
FaiI	YATR	7 cut(s)	8, 56, 175, 180, 186, 280, 334
FatI	CATG	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	179
FokI	GGATG	1 cut(s)	71
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	261
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	150, 180
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	2 cut(s)	150, 180
HpyAV	CCTTC	2 cut(s)	66, 203
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	260
LpnPI	CCDG	4 cut(s)	49, 138, 258, 300
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	17, 66, 166, 273
MluCI	AATT	2 cut(s)	107, 320
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	216, 224
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	2 cut(s)	77, 285
PdmI	GAANNNNTTC	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	77, 285
PspPI	GGNCC	1 cut(s)	284
PspPPI	RGGWCCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	216, 224
Sau96I	GGNCC	1 cut(s)	284
SetI	ASST	2 cut(s)	97, 157
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	6, 332
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	107, 320
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	102
TasI	AATT	2 cut(s)	107, 320
Tru1I	TTAA	2 cut(s)	216, 224
Tru9I	TTAA	2 cut(s)	216, 224
TspDTI	ATGAA	2 cut(s)	48, 162
Vha464I	CTTAAG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.